|
Properties
Property Name | Value |
TranscriptId | 599583 |
Track | FilteredModels2 |
ProteinId | 599497 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_20 | supercontig | scaffold_20:490521..493141 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7647 ID=mRNA_7647|Name=jgi.p|Nanoce1779_2|599497|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp ACAGTACCACCAGACAGTAGCCATGGCCGTCCCGGAGTCTATCCTCAAGA AGCGCCGCACCCAAGAGGCACTGTTGGCCCAGAAGGTGGCCGCCACGGCC GCGGCGAAGAAGGCCGCCCGTAAGAAGCGTGGGGAGACCGTAAAGCGGGC AGAGAAGTACGTCAAGGAATACACCAAGTTGGAGAACGACCAGATCCGCC TGCGACGAGAGGCCAAGGCCGCGGGGTCCTTCTATGTCCCCGCTGAAGCC AAGGTTGCCTTTGTCATGCGCATTCGCGGTATCAACGGCGTGTCCCCCAA GGTCAAGAAGATTTTGCAGCTCCTCCGCCTCCGCCAGATTCACAACGGTG TCTTCATCAAGCTCAACGGCAGCACTATCAACCTCCTCCGATGGGTGGAA CCTTACATCGCCTATGGCTACCCTAATCTCAAGTCGGTCCGTGAGCTCAT CTACAAGCGTGGGTATGCCAAGGTCAACAAGCAACGCCTCCCCCTGACTG ACAACACCCTCGTCGAGCAAGAGCTCGGAAAATACGGATTGATTTGTGTG GAGGATCTTATTCACGAGATCTACACTGTGGGCCCCAACTTTAAGCAAGC GGCCAACTTCCTGTGGCCGTTCAAGCTGTCCTCCCCCAAGGGTGGGTACA AGGAGAAGAAGACGCACTTCATCGAGGGCGGCGATGCCGGTGCCCGTGGT GCAAAGATCAACGCGCTCATCAAGTCTGTCCTCTAAAAGATTTGTGCCCT TTTTGGTAGCTTCATGAGTGTGTGTGAAGAGCATTTAGGGAGGGAGGGAG GTACGGGTAGGGAAGGAGAAGTGGCCTGGCCGTATTCTAGATGGAGGTAA TGGGGGGAAGGGAAAAGGGGATGGAGAGAAGACGGACAAAGAAACAAGCA AGCACGAACGAAAACATGACCGTCTTCACTTATTTTGCTGTGCGCCGGTT ATATACCATGATTCCCAACTCTGTCACGTAATCGTCTTGCATGCATGTGG AAGCGGGATACCCGTGGTTTGTGTTGTGACCTTCTCTTCTTCCTCCGTCG GCTATGTCACACCGCCATAAAGCCGTTTCGTTTCAGTCGTTGATAACCCA TCACCACACCACCGCTCCCTCAGTCATCCTCACATGTCCTGCTCCGCTTA CTGCTCCCTCAAGCCTTAAAAGGACATAACAGAGAGAGAAATTGTCTTGT CTTGCATGCCTGGTTCATCACACTCGAGTCACATAACCCATTCCCTTCCC ACGCCCACATGTATCACTCTCGCCTCTCACATCGAACCGCACTCCCACCT TTCCAC back to topprotein sequence of jgi.p|Nanoce1779_2|599497 >mRNA_7647-protein ID=mRNA_7647-protein|Name=jgi.p|Nanoce1779_2|599497|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp MAVPESILKKRRTQEALLAQKVAATAAAKKAARKKRGETVKRAEKYVKEY TKLENDQIRLRREAKAAGSFYVPAEAKVAFVMRIRGINGVSPKVKKILQL LRLRQIHNGVFIKLNGSTINLLRWVEPYIAYGYPNLKSVRELIYKRGYAK VNKQRLPLTDNTLVEQELGKYGLICVEDLIHEIYTVGPNFKQAANFLWPF KLSSPKGGYKEKKTHFIEGGDAGARGAKINALIKSVL* back to topmRNA from alignment at scaffold_20:490521..493141+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7647 ID=mRNA_7647|Name=jgi.p|Nanoce1779_2|599497|organism=Nannochloropsis oceanica|type=mRNA|length=2621bp|location=Sequence derived from alignment at scaffold_20:490521..493141+ (Nannochloropsis oceanica) ACAGTACCACCAGACAGTAGCCATGGCCGTCCCGGAGTCTATCCTCAAGA
AGCGCCGCACCCAAGAGGCACTGTTGGCCCAGAAGGTGGCCGCCACGGCC
GCGGCGAAGAAGGCAAGTGGAAGAGAGAGATGATGGAGGAAGGGCAAGAG
AAAGGTTGTGGCTGAGAAGAGATGGAACGAAATAGTGGGATAATGTGTGA
GCGGAGTGGAAGGCAGCGGGCGGCGCGGAGAGTAAGGAGGGGGAGGGGCC
AAGTGAGGTGGATGGTGTACCAAGCGGTGGACGAGTGCGCGGGACTCATG
ATGATGGTATCACCACAGCAGTTGGGCTAGACCGTAGCCTTTTCGGACAG
CTTTAGAAAGGCTGTATGAATGGTTGCAAAGGCGTAGAGAGGTGTAGGAA
ACAAATGTGGCTCGTGAGAGAAGAAGCCGCTTTCATCCTCGATCGTCGTC
CCTTCCATATTGACTTCGTCTCCCTCCCTCCCTTCTTACCTCCCTCCTTC
CTTCCTCCCTCCACAGGCCGCCCGTAAGAAGCGTGGGGAGACCGTAAAGC
GGGCAGAGAAGTACGTCAAGGAATACACCAAGGTAAGGAGGGAGGGAAAG
AGGAAGAGGAGAGATGGTGCTGCTGAAGCCTAGACACGAGAACAAGCTTG
AGTGCGCACATTCACACACCTTCTTCTCTCCCTCTTTCCTTCTCTCCTTC
CTTCCCTCCCTTCCCATCAGTTGGAGAACGACCAGATCCGCCTGCGACGA
GAGGCCAAGGCCGCGGGGTCCTTCTATGTCCCCGCTGAAGCCAAGGTTGC
CTTTGTCATGCGCATTCGCGGTATCAACGGCGTGTCCCCCAAGGTAAATA
CATGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CGTTCCTCCTTCCTCGTTCGCTCTCTCGCTTCTCTTGATGCGTACAATTG
TTCACCCTCTTCCCTCTCTTTCCTCTCTTCCTCCCTGCCTCTTCCCCACA
GGTCAAGAAGATTTTGCAGCTCCTCCGCCTCCGCCAGATTCACAACGGTG
GTACGTGTTATCGCGAGGAATGGACGGAAGGACGGAGAGAGGAAGGGACA
TCAGATCTTAAGGGGCACGTCGTAGGAGGGCAAATGGGAAATATGTACAA
AGCACTCATCCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCTTCCCTC
CTTCCCTCCTTCCCTCCCTCCTACCCTCCCTCAGTCTTCATCAAGCTCAA
CGGCAGCACTATCAACCTCCTCCGATGGGTGGAACCTTACATCGCCTATG
GCTACCCTAATCTCAAGTCGGTCCGTGAGCTCATCTACAAGCGTGGGTAT
GCCAAGGTACGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
TCATTCAACAGGATTCCTCACTGTCTTTTGACAAGATAGATATTCACCTT
TCCCTCTTCCTCCTCCCTCCTCCTCCAAACCCCCCCCTATCTAGGTCAAC
AAGCAACGCCTCCCCCTGACTGACAACACCCTCGTCGAGCAAGAGCTCGG
AAAATACGGATTGATTTGTGTGGAGGATCTTATTCACGAGATCTACACTG
TGGTACGTCCTTTTTCTTTCCCTCCCTTCCATCGCACCTTCCATCCCTCC
CTCCCCTCCTCCTTTCCTCGTTTCTTCTTTTGCATCCTCTTTCCATCACT
CGACGGTCGGCACATTCTCACCACCCCTTCCTCTTCCCTCTCTCCTTCCA
CCCTCGTCGCTCAGGGCCCCAACTTTAAGCAAGCGGCCAACTTCCTGTGG
CCGTTCAAGCTGTCCTCCCCCAAGGTAGGTCCTCTTTTTTCCCTCCCCTT
TCCCCTTTCCTCCTTGTCTCCGCGCGTTGGCCTCGTGGCATCTCTCTCAT
GCGTGCTCATCCACTCCTCCTCCCTTCTTCCCTCCCCATCATTATCATCC
AAAAGGGTGGGTACAAGGAGAAGAAGACGCACTTCATCGAGGGCGGCGAT
GCCGGTGCCCGTGGTGCAAAGATCAACGCGCTCATCAAGTCTGTCCTCTA
AAAGATTTGTGCCCTTTTTGGTAGCTTCATGAGTGTGTGTGAAGAGCATT
TAGGGAGGGAGGGAGGTACGGGTAGGGAAGGAGAAGTGGCCTGGCCGTAT
TCTAGATGGAGGTAATGGGGGGAAGGGAAAAGGGGATGGAGAGAAGACGG
ACAAAGAAACAAGCAAGCACGAACGAAAACATGACCGTCTTCACTTATTT
TGCTGTGCGCCGGTTATATACCATGATTCCCAACTCTGTCACGTAATCGT
CTTGCATGCATGTGGAAGCGGGATACCCGTGGTTTGTGTTGTGACCTTCT
CTTCTTCCTCCGTCGGCTATGTCACACCGCCATAAAGCCGTTTCGTTTCA
GTCGTTGATAACCCATCACCACACCACCGCTCCCTCAGTCATCCTCACAT
GTCCTGCTCCGCTTACTGCTCCCTCAAGCCTTAAAAGGACATAACAGAGA
GAGAAATTGTCTTGTCTTGCATGCCTGGTTCATCACACTCGAGTCACATA
ACCCATTCCCTTCCCACGCCCACATGTATCACTCTCGCCTCTCACATCGA
ACCGCACTCCCACCTTTCCAC back to topCoding sequence (CDS) from alignment at scaffold_20:490521..493141+ >mRNA_7647 ID=mRNA_7647|Name=jgi.p|Nanoce1779_2|599497|organism=Nannochloropsis oceanica|type=CDS|length=5712bp|location=Sequence derived from alignment at scaffold_20:490521..493141+ (Nannochloropsis oceanica) ATGGCCGTCCCGGAGTCTATCCTCAAGAAGCGCCGCACCCAAGAGGCACT GTTGGCCCAGAAGGTGGCCGCCACGGCCGCGGCGAAGAAGGCCGCCCGTA AGAAGCGTGGGGAGACCGTAAAGCGGGCAGAGAAGTACGTCAAGGAATAC ACCAAGTTGGAGAACGACCAGATCCGCCTGCGACGAGAGGCCAAGGCCGC GGGGTCCTTCTATGTCCCCGCTGAAGCCAAGGTTGCCTTTGTCATGCGCA TTCGCGGTATCAACGGCGTGTCCCCCAAGGTCAAGAAGATTTTGCAGCTC CTCCGCCTCCGCCAGATTCACAACGGTGTCTTCATCAAGCTCAACGGCAG CACTATCAACCTCCTCCGATGGGTGGAACCTTACATCGCCTATGGCTACC CTAATCTCAAGTCGGTCCGTGAGCTCATCTACAAGCGTGGGTATGCCAAG GTCAACAAGCAACGCCTCCCCCTGACTGACAACACCCTCGTCGAGCAAGA GCTCGGAAAATACGGATTGATTTGTGTGGAGGATCTTATTCACGAGATCT ACACTGTGGGCCCCAACTTTAAGCAAGCGGCCAACTTCCTGTGGCCGTTC AAGCTGTCCTCCCCCAAGGGTGGGTACAAGGAGAAGAAGACGCACTTCAT CGAGGGCGGCGATGCCGGTGCCCGTGGTGCAAAGATCAACGCGCTCATCA AGTCTGTCCTCTAAATGGCCGTCCCGGAGTCTATCCTCAAGAAGCGCCGC ACCCAAGAGGCACTGTTGGCCCAGAAGGTGGCCGCCACGGCCGCGGCGAA GAAGGCCGCCCGTAAGAAGCGTGGGGAGACCGTAAAGCGGGCAGAGAAGT ACGTCAAGGAATACACCAAGTTGGAGAACGACCAGATCCGCCTGCGACGA GAGGCCAAGGCCGCGGGGTCCTTCTATGTCCCCGCTGAAGCCAAGGTTGC CTTTGTCATGCGCATTCGCGGTATCAACGGCGTGTCCCCCAAGGTCAAGA AGATTTTGCAGCTCCTCCGCCTCCGCCAGATTCACAACGGTGTCTTCATC AAGCTCAACGGCAGCACTATCAACCTCCTCCGATGGGTGGAACCTTACAT CGCCTATGGCTACCCTAATCTCAAGTCGGTCCGTGAGCTCATCTACAAGC GTGGGTATGCCAAGGTCAACAAGCAACGCCTCCCCCTGACTGACAACACC CTCGTCGAGCAAGAGCTCGGAAAATACGGATTGATTTGTGTGGAGGATCT TATTCACGAGATCTACACTGTGGGCCCCAACTTTAAGCAAGCGGCCAACT TCCTGTGGCCGTTCAAGCTGTCCTCCCCCAAGGGTGGGTACAAGGAGAAG AAGACGCACTTCATCGAGGGCGGCGATGCCGGTGCCCGTGGTGCAAAGAT CAACGCGCTCATCAAGTCTGTCCTCTAAATGGCCGTCCCGGAGTCTATCC TCAAGAAGCGCCGCACCCAAGAGGCACTGTTGGCCCAGAAGGTGGCCGCC ACGGCCGCGGCGAAGAAGGCCGCCCGTAAGAAGCGTGGGGAGACCGTAAA GCGGGCAGAGAAGTACGTCAAGGAATACACCAAGTTGGAGAACGACCAGA TCCGCCTGCGACGAGAGGCCAAGGCCGCGGGGTCCTTCTATGTCCCCGCT GAAGCCAAGGTTGCCTTTGTCATGCGCATTCGCGGTATCAACGGCGTGTC CCCCAAGGTCAAGAAGATTTTGCAGCTCCTCCGCCTCCGCCAGATTCACA ACGGTGTCTTCATCAAGCTCAACGGCAGCACTATCAACCTCCTCCGATGG GTGGAACCTTACATCGCCTATGGCTACCCTAATCTCAAGTCGGTCCGTGA GCTCATCTACAAGCGTGGGTATGCCAAGGTCAACAAGCAACGCCTCCCCC TGACTGACAACACCCTCGTCGAGCAAGAGCTCGGAAAATACGGATTGATT TGTGTGGAGGATCTTATTCACGAGATCTACACTGTGGGCCCCAACTTTAA GCAAGCGGCCAACTTCCTGTGGCCGTTCAAGCTGTCCTCCCCCAAGGGTG GGTACAAGGAGAAGAAGACGCACTTCATCGAGGGCGGCGATGCCGGTGCC CGTGGTGCAAAGATCAACGCGCTCATCAAGTCTGTCCTCTAAATGGCCGT CCCGGAGTCTATCCTCAAGAAGCGCCGCACCCAAGAGGCACTGTTGGCCC AGAAGGTGGCCGCCACGGCCGCGGCGAAGAAGGCCGCCCGTAAGAAGCGT GGGGAGACCGTAAAGCGGGCAGAGAAGTACGTCAAGGAATACACCAAGTT GGAGAACGACCAGATCCGCCTGCGACGAGAGGCCAAGGCCGCGGGGTCCT TCTATGTCCCCGCTGAAGCCAAGGTTGCCTTTGTCATGCGCATTCGCGGT ATCAACGGCGTGTCCCCCAAGGTCAAGAAGATTTTGCAGCTCCTCCGCCT CCGCCAGATTCACAACGGTGTCTTCATCAAGCTCAACGGCAGCACTATCA ACCTCCTCCGATGGGTGGAACCTTACATCGCCTATGGCTACCCTAATCTC AAGTCGGTCCGTGAGCTCATCTACAAGCGTGGGTATGCCAAGGTCAACAA GCAACGCCTCCCCCTGACTGACAACACCCTCGTCGAGCAAGAGCTCGGAA AATACGGATTGATTTGTGTGGAGGATCTTATTCACGAGATCTACACTGTG GGCCCCAACTTTAAGCAAGCGGCCAACTTCCTGTGGCCGTTCAAGCTGTC CTCCCCCAAGGGTGGGTACAAGGAGAAGAAGACGCACTTCATCGAGGGCG GCGATGCCGGTGCCCGTGGTGCAAAGATCAACGCGCTCATCAAGTCTGTC CTCTAAATGGCCGTCCCGGAGTCTATCCTCAAGAAGCGCCGCACCCAAGA GGCACTGTTGGCCCAGAAGGTGGCCGCCACGGCCGCGGCGAAGAAGGCCG CCCGTAAGAAGCGTGGGGAGACCGTAAAGCGGGCAGAGAAGTACGTCAAG GAATACACCAAGTTGGAGAACGACCAGATCCGCCTGCGACGAGAGGCCAA GGCCGCGGGGTCCTTCTATGTCCCCGCTGAAGCCAAGGTTGCCTTTGTCA TGCGCATTCGCGGTATCAACGGCGTGTCCCCCAAGGTCAAGAAGATTTTG CAGCTCCTCCGCCTCCGCCAGATTCACAACGGTGTCTTCATCAAGCTCAA CGGCAGCACTATCAACCTCCTCCGATGGGTGGAACCTTACATCGCCTATG GCTACCCTAATCTCAAGTCGGTCCGTGAGCTCATCTACAAGCGTGGGTAT GCCAAGGTCAACAAGCAACGCCTCCCCCTGACTGACAACACCCTCGTCGA GCAAGAGCTCGGAAAATACGGATTGATTTGTGTGGAGGATCTTATTCACG AGATCTACACTGTGGGCCCCAACTTTAAGCAAGCGGCCAACTTCCTGTGG CCGTTCAAGCTGTCCTCCCCCAAGGGTGGGTACAAGGAGAAGAAGACGCA CTTCATCGAGGGCGGCGATGCCGGTGCCCGTGGTGCAAAGATCAACGCGC TCATCAAGTCTGTCCTCTAAATGGCCGTCCCGGAGTCTATCCTCAAGAAG CGCCGCACCCAAGAGGCACTGTTGGCCCAGAAGGTGGCCGCCACGGCCGC GGCGAAGAAGGCCGCCCGTAAGAAGCGTGGGGAGACCGTAAAGCGGGCAG AGAAGTACGTCAAGGAATACACCAAGTTGGAGAACGACCAGATCCGCCTG CGACGAGAGGCCAAGGCCGCGGGGTCCTTCTATGTCCCCGCTGAAGCCAA GGTTGCCTTTGTCATGCGCATTCGCGGTATCAACGGCGTGTCCCCCAAGG TCAAGAAGATTTTGCAGCTCCTCCGCCTCCGCCAGATTCACAACGGTGTC TTCATCAAGCTCAACGGCAGCACTATCAACCTCCTCCGATGGGTGGAACC TTACATCGCCTATGGCTACCCTAATCTCAAGTCGGTCCGTGAGCTCATCT ACAAGCGTGGGTATGCCAAGGTCAACAAGCAACGCCTCCCCCTGACTGAC AACACCCTCGTCGAGCAAGAGCTCGGAAAATACGGATTGATTTGTGTGGA GGATCTTATTCACGAGATCTACACTGTGGGCCCCAACTTTAAGCAAGCGG CCAACTTCCTGTGGCCGTTCAAGCTGTCCTCCCCCAAGGGTGGGTACAAG GAGAAGAAGACGCACTTCATCGAGGGCGGCGATGCCGGTGCCCGTGGTGC AAAGATCAACGCGCTCATCAAGTCTGTCCTCTAAATGGCCGTCCCGGAGT CTATCCTCAAGAAGCGCCGCACCCAAGAGGCACTGTTGGCCCAGAAGGTG GCCGCCACGGCCGCGGCGAAGAAGGCCGCCCGTAAGAAGCGTGGGGAGAC CGTAAAGCGGGCAGAGAAGTACGTCAAGGAATACACCAAGTTGGAGAACG ACCAGATCCGCCTGCGACGAGAGGCCAAGGCCGCGGGGTCCTTCTATGTC CCCGCTGAAGCCAAGGTTGCCTTTGTCATGCGCATTCGCGGTATCAACGG CGTGTCCCCCAAGGTCAAGAAGATTTTGCAGCTCCTCCGCCTCCGCCAGA TTCACAACGGTGTCTTCATCAAGCTCAACGGCAGCACTATCAACCTCCTC CGATGGGTGGAACCTTACATCGCCTATGGCTACCCTAATCTCAAGTCGGT CCGTGAGCTCATCTACAAGCGTGGGTATGCCAAGGTCAACAAGCAACGCC TCCCCCTGACTGACAACACCCTCGTCGAGCAAGAGCTCGGAAAATACGGA TTGATTTGTGTGGAGGATCTTATTCACGAGATCTACACTGTGGGCCCCAA CTTTAAGCAAGCGGCCAACTTCCTGTGGCCGTTCAAGCTGTCCTCCCCCA AGGGTGGGTACAAGGAGAAGAAGACGCACTTCATCGAGGGCGGCGATGCC GGTGCCCGTGGTGCAAAGATCAACGCGCTCATCAAGTCTGTCCTCTAAAT GGCCGTCCCGGAGTCTATCCTCAAGAAGCGCCGCACCCAAGAGGCACTGT TGGCCCAGAAGGTGGCCGCCACGGCCGCGGCGAAGAAGGCCGCCCGTAAG AAGCGTGGGGAGACCGTAAAGCGGGCAGAGAAGTACGTCAAGGAATACAC CAAGTTGGAGAACGACCAGATCCGCCTGCGACGAGAGGCCAAGGCCGCGG GGTCCTTCTATGTCCCCGCTGAAGCCAAGGTTGCCTTTGTCATGCGCATT CGCGGTATCAACGGCGTGTCCCCCAAGGTCAAGAAGATTTTGCAGCTCCT CCGCCTCCGCCAGATTCACAACGGTGTCTTCATCAAGCTCAACGGCAGCA CTATCAACCTCCTCCGATGGGTGGAACCTTACATCGCCTATGGCTACCCT AATCTCAAGTCGGTCCGTGAGCTCATCTACAAGCGTGGGTATGCCAAGGT CAACAAGCAACGCCTCCCCCTGACTGACAACACCCTCGTCGAGCAAGAGC TCGGAAAATACGGATTGATTTGTGTGGAGGATCTTATTCACGAGATCTAC ACTGTGGGCCCCAACTTTAAGCAAGCGGCCAACTTCCTGTGGCCGTTCAA GCTGTCCTCCCCCAAGGGTGGGTACAAGGAGAAGAAGACGCACTTCATCG AGGGCGGCGATGCCGGTGCCCGTGGTGCAAAGATCAACGCGCTCATCAAG TCTGTCCTCTAA back to top
|