jgi.p|Nanoce1779_2|599476, mRNA_7643 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599476
Unique NamemRNA_7643
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length783
Alignment locationscaffold_20:469354..470415 -

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Properties
Property NameValue
TranscriptId599562
TrackFilteredModels2
ProteinId599476
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:469354..470415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599476gene_7643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599476mRNA_7643-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7643CDS_7643Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7643 ID=mRNA_7643|Name=jgi.p|Nanoce1779_2|599476|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
CAGACATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACGTCTCAAGATT
GGCGGCAAAGAAGTGGACGTCAAGAAGAAAAAGAAGTCCCACAAGAAGAA
ACGTGCCCGTGACAAGGATGACGACGGCGACCATCCGACAAGCAGCAGCT
CTCGTTCCCGCAAAGAAGATGTGGATGGGGAGGAAGGGGGGGAGGAAGCT
CCCTTCCTCCAAGCCAAGCAAGGCACAGGCCGTATAACGACCAGCGGACA
GATCGTCACGGGCTATGAGACAGAATTTCTGCGAGAATTGAGGGTCAATG
ATGCATTAATCATCACGCATCCCTCCACTTTCATCGAGGAAACCCGGATC
ATTAAAATGATTGTCTCGAATAGCGGCATGTCCCTCTCCAGTGGCTTCTC
CACGGACCTCATAAGCACAACAGGGTTCCGGTACCTTCATCCACCTGAAG
AAGAGGGGGAGGATGGGAGGGAGGCCCGGGAGGAGGAGGGGAGGAAGAGG
GAGAAAGCGGGGGAGGAGGACAAGGCGTTTGGGACCTACGGAGGAGGGGG
AGGGACGAAGCTTGTGTACAGGGTGAAGAAAGGAGGGGTATATGGTGGAT
ATAAGATCGTGACAGAAGACACGGGCGCGGCCTTGTCGCGGACGGAGTTG
TTGGAGAGGAGATTGCAGCACAAGAGTGATCGACACGCGAATTAGGGATG
GAAGGAGAAAAGGCGAGCTAAAGCAGAAGTTGAAAAGACGAAGTTGTAAT
GTTATGGGTCCTTGCAGGCTCTTATATACGTCG
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protein sequence of jgi.p|Nanoce1779_2|599476

>mRNA_7643-protein ID=mRNA_7643-protein|Name=jgi.p|Nanoce1779_2|599476|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MSESYRKAVGGRLKIGGKEVDVKKKKKSHKKKRARDKDDDGDHPTSSSSR
SRKEDVDGEEGGEEAPFLQAKQGTGRITTSGQIVTGYETEFLRELRVNDA
LIITHPSTFIEETRIIKMIVSNSGMSLSSGFSTDLISTTGFRYLHPPEEE
GEDGREAREEEGRKREKAGEEDKAFGTYGGGGGTKLVYRVKKGGVYGGYK
IVTEDTGAALSRTELLERRLQHKSDRHAN*
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mRNA from alignment at scaffold_20:469354..470415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7643 ID=mRNA_7643|Name=jgi.p|Nanoce1779_2|599476|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_20:469354..470415- (Nannochloropsis oceanica)
CAGACATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACGTCTCAAGATT
GGCGGCAAAGAAGTGGACGTGTAAGTGTGAGCGGGAAGAGGCAAGGTACT
CCATGACGAATGAAGTAATGCACAGGTCCATCACTATTATATGTCCTCTC
CCTTAACGATCGTCCCGCCCTCTCCCCGCATTTCTTTTTCCATTTTATGA
CCGGCTCGTTCTCCACCAGTACTGTCCCATCGTTTGTTGGTCCGGCCGCG
CTTCTCCCTCCTCCCCACTCCGTCCCATCCTTCTTCCCATCTTCCCCCCC
CTCGCGGCCCAAACCTCTAAAACCTACCGCATCTACCCACTCCAAACAGC
AAGAAGAAAAAGAAGTCCCACAAGAAGAAACGTGCCCGTGACAAGGATGA
CGACGGCGACCATCCGACAAGCAGCAGCTCTCGTTCCCGCAAAGAAGATG
TGGATGGGGAGGAAGGGGGGGAGGAAGCTCCCTTCCTCCAAGCCAAGCAA
GGCACAGGCCGTATAACGACCAGCGGACAGATCGTCACGGGCTATGAGAC
AGAATTTCTGCGAGAATTGAGGGTCAATGATGCATTAATCATCACGCATC
CCTCCACTTTCATCGAGGAAACCCGGATCATTAAAATGATTGTCTCGAAT
AGCGGCATGTCCCTCTCCAGTGGCTTCTCCACGGACCTCATAAGCACAAC
AGGGTTCCGGTACCTTCATCCACCTGAAGAAGAGGGGGAGGATGGGAGGG
AGGCCCGGGAGGAGGAGGGGAGGAAGAGGGAGAAAGCGGGGGAGGAGGAC
AAGGCGTTTGGGACCTACGGAGGAGGGGGAGGGACGAAGCTTGTGTACAG
GGTGAAGAAAGGAGGGGTATATGGTGGATATAAGATCGTGACAGAAGACA
CGGGCGCGGCCTTGTCGCGGACGGAGTTGTTGGAGAGGAGATTGCAGCAC
AAGAGTGATCGACACGCGAATTAGGGATGGAAGGAGAAAAGGCGAGCTAA
AGCAGAAGTTGAAAAGACGAAGTTGTAATGTTATGGGTCCTTGCAGGCTC
TTATATACGTCG
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Coding sequence (CDS) from alignment at scaffold_20:469354..470415-

>mRNA_7643 ID=mRNA_7643|Name=jgi.p|Nanoce1779_2|599476|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_20:469354..470415- (Nannochloropsis oceanica)
CAAGAAGAAAAAGAAGTCCCACAAGAAGAAACGTGCCCGTGACAAGGATG
ACGACGGCGACCATCCGACAAGCAGCAGCTCTCGTTCCCGCAAAGAAGAT
GTGGATGGGGAGGAAGGGGGGGAGGAAGCTCCCTTCCTCCAAGCCAAGCA
AGGCACAGGCCGTATAACGACCAGCGGACAGATCGTCACGGGCTATGAGA
CAGAATTTCTGCGAGAATTGAGGGTCAATGATGCATTAATCATCACGCAT
CCCTCCACTTTCATCGAGGAAACCCGGATCATTAAAATGATTGTCTCGAA
TAGCGGCATGTCCCTCTCCAGTGGCTTCTCCACGGACCTCATAAGCACAA
CAGGGTTCCGGTACCTTCATCCACCTGAAGAAGAGGGGGAGGATGGGAGG
GAGGCCCGGGAGGAGGAGGGGAGGAAGAGGGAGAAAGCGGGGGAGGAGGA
CAAGGCGTTTGGGACCTACGGAGGAGGGGGAGGGACGAAGCTTGTGTACA
GGGTGAAGAAAGGAGGGGTATATGGTGGATATAAGATCGTGACAGAAGAC
ACGGGCGCGGCCTTGTCGCGGACGGAGTTGTTGGAGAGGAGATTGCAGCA
CAAGAGTGATCGACACGCGAATTAGATGTCTGAGTCCTACCGCAAGGCCG
TCGGTGGACGTCTCAAGATTGGCGGCAAAGAAGTGGACGTCAAGAAGAAA
AAGAAGTCCCACAAGAAGAAACGTGCCCGTGACAAGGATGACGACGGCGA
CCATCCGACAAGCAGCAGCTCTCGTTCCCGCAAAGAAGATGTGGATGGGG
AGGAAGGGGGGGAGGAAGCTCCCTTCCTCCAAGCCAAGCAAGGCACAGGC
CGTATAACGACCAGCGGACAGATCGTCACGGGCTATGAGACAGAATTTCT
GCGAGAATTGAGGGTCAATGATGCATTAATCATCACGCATCCCTCCACTT
TCATCGAGGAAACCCGGATCATTAAAATGATTGTCTCGAATAGCGGCATG
TCCCTCTCCAGTGGCTTCTCCACGGACCTCATAAGCACAACAGGGTTCCG
GTACCTTCATCCACCTGAAGAAGAGGGGGAGGATGGGAGGGAGGCCCGGG
AGGAGGAGGGGAGGAAGAGGGAGAAAGCGGGGGAGGAGGACAAGGCGTTT
GGGACCTACGGAGGAGGGGGAGGGACGAAGCTTGTGTACAGGGTGAAGAA
AGGAGGGGTATATGGTGGATATAAGATCGTGACAGAAGACACGGGCGCGG
CCTTGTCGCGGACGGAGTTGTTGGAGAGGAGATTGCAGCACAAGAGTGAT
CGACACGCGAATTAGATGTCTGAGTCCTACCGCAAGGCCGTCGGTGGACG
TCTCAAGATTGGCGGCAAAGAAGTGGACGT
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Synonyms
Publications