jgi.p|Nanoce1779_2|558770, mRNA_7642 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|558770
Unique NamemRNA_7642
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1319
Alignment locationscaffold_20:467947..469353 -

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Properties
Property NameValue
TranscriptId558856
TrackFilteredModels2
ProteinId558770
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:467947..469353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558770gene_7642Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558770mRNA_7642-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7642CDS_7642Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7642 ID=mRNA_7642|Name=jgi.p|Nanoce1779_2|558770|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
TGTCTATGTAAACGTCAATGCTTTCTTTTGCTAACTTAAATTGCTGCCTT
GAATGTGTGTCAAGTCTTTTCCATGACACTCATGCACTCTATGTAAGTAA
CCGGGAGGTTTAAGAGTGCAGCGAGTCTTTGCACAAAGCCCACAATGCTT
GCAATGGATGCTGCGGGACTTCCCTCTCAAAATATGTGACTGGTGGCAGG
GTGTGTGGAGCGTGTGCGTTTTGGAATGGGACGGTAGGAGGCAGGCATTG
TTTTTTTTCACTCGCCACGTACGCGTGCTGCTTCTATCATACCCGCACCA
CCCACACGCTAAACACCACTCAACCACACAGAGAATCCCAAGAAGAGAAA
ATGGCACGAGCAGCGGATACTGAGGCTGGCGGGGGATGTCCTGTGAAAGG
CAGTGGCAGCAGCAACAGTAGCGCAAGCAACGAGAGCTCTGCCAAGCCCA
CTTCCAGCACAAATGTTGGTATATTCTCTGGTATTGGTGCCTGGTTTGGC
AGCGGCAAGCCCACCGCAGGCGGCAACCCCAACCCCAGCAGCAGCAGCAG
CACCGACGGGTGTCCGGTCAAAGGCAGCCCACCCCCTCCCATCAATCCTC
TCAACAACGAACGACTGTACTCCCAATCGCCCCAAGCCACGCAAACTGTT
CCCCTATCGACGTCTCGGCAAGTCTCGTCTATACCTAAGTCTGACTACAC
ACCTAAGCACCAACCTAAGTGGGTCGAGGATAAGTGGGTGTATCCTTCCG
AGCAGCAGTACTATAACGCCATGAAGTCCAAGGGCTTTAACCCCCTCCCC
CAAGACGTGCACATCATCCTGGCCATCCACAACGCGGTGAACGAGCAGGG
CTGGAATCAACTTTTAGAATGGGAGAAGGTGCATTCGGCCACCCCTCCCA
AGCTGAAGCGTTTCATGGGCCGCCCGCAAGATTTGTCGCCAAAGGCTGCG
CTGCTGTGGATTACCGGGCAAGCCAACCGGCCGTTTGACCGACACGATTG
GGTGGTGGAGAGGGAAAATGGGAAGGAAGTGCGGTATGTCATTGATTTTT
ACACGGGGCAGACTGACCCCAAAGATCCGAAGCCTGTGTCGATGCATCTG
GACGTGAGGCCTGCCCTGGACTCGGGTGACGCGCTAAAAATGAGGGTAGG
AAAGGCAGTGGACGAATGGAAGGAGGAGTGGTTCGGAAGGGAGGGAGGGA
AGGAGGGAGTGGTACCGTCGTGGCTGGCGGCGGCAGCGGCGATGGTGGGA
GGGGAGGGAAAGAAGGAGGGAGGGGCGCCGCGAGCTGTTCCTGGGGACGC
GCGGGCGGCCACCAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|558770

>mRNA_7642-protein ID=mRNA_7642-protein|Name=jgi.p|Nanoce1779_2|558770|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MARAADTEAGGGCPVKGSGSSNSSASNESSAKPTSSTNVGIFSGIGAWFG
SGKPTAGGNPNPSSSSSTDGCPVKGSPPPPINPLNNERLYSQSPQATQTV
PLSTSRQVSSIPKSDYTPKHQPKWVEDKWVYPSEQQYYNAMKSKGFNPLP
QDVHIILAIHNAVNEQGWNQLLEWEKVHSATPPKLKRFMGRPQDLSPKAA
LLWITGQANRPFDRHDWVVERENGKEVRYVIDFYTGQTDPKDPKPVSMHL
DVRPALDSGDALKMRVGKAVDEWKEEWFGREGGKEGVVPSWLAAAAAMVG
GEGKKEGGAPRAVPGDARAATK*
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mRNA from alignment at scaffold_20:467947..469353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7642 ID=mRNA_7642|Name=jgi.p|Nanoce1779_2|558770|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at scaffold_20:467947..469353- (Nannochloropsis oceanica)
TGTCTATGTAAACGTCAATGCTTTCTTTTGCTAACTTAAATTGCTGCCTT
GAATGTGTGTCAAGTCTTTTCCATGACACTCATGCACTCTATGTAAGTAA
CCGGGAGGTTTAAGAGTGCAGCGAGTCTTTGCACAAAGCCCACAATGCTT
GCAATGGATGCTGCGGGACTTCCCTCTCAAAATATGTGACTGGTGGCAGG
GTGTGTGGAGCGTGTGCGTTTTGGAATGGGACGGTAGGAGGCAGGCATTG
TTTTTTTTCACTCGCCACGTACGCGTGCTGCTTCTATCATACCCGCACCA
CCCACACGCTAAACACCACTCAACCACACAGAGAATCCCAAGAAGAGAAA
ATGGCACGAGCAGCGGATACTGAGGCTGGCGGGGGATGTCCTGTGAAAGG
CAGTGGCAGCAGCAACAGTAGCGCAAGCAACGAGGTACGTCTTGATAGCC
CCATTCTCTTTCTACCCCTCGTCTACCACCTCATCCAATGCACCACCACC
ACTACCATACGCGTATCGCCAGAGCTCTGCCAAGCCCACTTCCAGCACAA
ATGTTGGTATATTCTCTGGTATTGGTGCCTGGTTTGGCAGCGGCAAGCCC
ACCGCAGGCGGCAACCCCAACCCCAGCAGCAGCAGCAGCACCGACGGGTG
TCCGGTCAAAGGCAGCCCACCCCCTCCCATCAATCCTCTCAACAACGAAC
GACTGTACTCCCAATCGCCCCAAGCCACGCAAACTGTTCCCCTATCGACG
TCTCGGCAAGTCTCGTCTATACCTAAGTCTGACTACACACCTAAGCACCA
ACCTAAGTGGGTCGAGGATAAGTGGGTGTATCCTTCCGAGCAGCAGTACT
ATAACGCCATGAAGTCCAAGGGCTTTAACCCCCTCCCCCAAGACGTGCAC
ATCATCCTGGCCATCCACAACGCGGTGAACGAGCAGGGCTGGAATCAACT
TTTAGAATGGGAGAAGGTGCATTCGGCCACCCCTCCCAAGCTGAAGCGTT
TCATGGGCCGCCCGCAAGATTTGTCGCCAAAGGCTGCGCTGCTGTGGATT
ACCGGGCAAGCCAACCGGCCGTTTGACCGACACGATTGGGTGGTGGAGAG
GGAAAATGGGAAGGAAGTGCGGTATGTCATTGATTTTTACACGGGGCAGA
CTGACCCCAAAGATCCGAAGCCTGTGTCGATGCATCTGGACGTGAGGCCT
GCCCTGGACTCGGGTGACGCGCTAAAAATGAGGGTAGGAAAGGCAGTGGA
CGAATGGAAGGAGGAGTGGTTCGGAAGGGAGGGAGGGAAGGAGGGAGTGG
TACCGTCGTGGCTGGCGGCGGCAGCGGCGATGGTGGGAGGGGAGGGAAAG
AAGGAGGGAGGGGCGCCGCGAGCTGTTCCTGGGGACGCGCGGGCGGCCAC
CAAGTGA
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Coding sequence (CDS) from alignment at scaffold_20:467947..469353-

>mRNA_7642 ID=mRNA_7642|Name=jgi.p|Nanoce1779_2|558770|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_20:467947..469353- (Nannochloropsis oceanica)
AGCTCTGCCAAGCCCACTTCCAGCACAAATGTTGGTATATTCTCTGGTAT
TGGTGCCTGGTTTGGCAGCGGCAAGCCCACCGCAGGCGGCAACCCCAACC
CCAGCAGCAGCAGCAGCACCGACGGGTGTCCGGTCAAAGGCAGCCCACCC
CCTCCCATCAATCCTCTCAACAACGAACGACTGTACTCCCAATCGCCCCA
AGCCACGCAAACTGTTCCCCTATCGACGTCTCGGCAAGTCTCGTCTATAC
CTAAGTCTGACTACACACCTAAGCACCAACCTAAGTGGGTCGAGGATAAG
TGGGTGTATCCTTCCGAGCAGCAGTACTATAACGCCATGAAGTCCAAGGG
CTTTAACCCCCTCCCCCAAGACGTGCACATCATCCTGGCCATCCACAACG
CGGTGAACGAGCAGGGCTGGAATCAACTTTTAGAATGGGAGAAGGTGCAT
TCGGCCACCCCTCCCAAGCTGAAGCGTTTCATGGGCCGCCCGCAAGATTT
GTCGCCAAAGGCTGCGCTGCTGTGGATTACCGGGCAAGCCAACCGGCCGT
TTGACCGACACGATTGGGTGGTGGAGAGGGAAAATGGGAAGGAAGTGCGG
TATGTCATTGATTTTTACACGGGGCAGACTGACCCCAAAGATCCGAAGCC
TGTGTCGATGCATCTGGACGTGAGGCCTGCCCTGGACTCGGGTGACGCGC
TAAAAATGAGGGTAGGAAAGGCAGTGGACGAATGGAAGGAGGAGTGGTTC
GGAAGGGAGGGAGGGAAGGAGGGAGTGGTACCGTCGTGGCTGGCGGCGGC
AGCGGCGATGGTGGGAGGGGAGGGAAAGAAGGAGGGAGGGGCGCCGCGAG
CTGTTCCTGGGGACGCGCGGGCGGCCACCAAGTGAATGGCACGAGCAGCG
GATACTGAGGCTGGCGGGGGATGTCCTGTGAAAGGCAGTGGCAGCAGCAA
CAGTAGCGCAAGCAACGAGAGCTCTGCCAAGCCCACTTCCAGCACAAATG
TTGGTATATTCTCTGGTATTGGTGCCTGGTTTGGCAGCGGCAAGCCCACC
GCAGGCGGCAACCCCAACCCCAGCAGCAGCAGCAGCACCGACGGGTGTCC
GGTCAAAGGCAGCCCACCCCCTCCCATCAATCCTCTCAACAACGAACGAC
TGTACTCCCAATCGCCCCAAGCCACGCAAACTGTTCCCCTATCGACGTCT
CGGCAAGTCTCGTCTATACCTAAGTCTGACTACACACCTAAGCACCAACC
TAAGTGGGTCGAGGATAAGTGGGTGTATCCTTCCGAGCAGCAGTACTATA
ACGCCATGAAGTCCAAGGGCTTTAACCCCCTCCCCCAAGACGTGCACATC
ATCCTGGCCATCCACAACGCGGTGAACGAGCAGGGCTGGAATCAACTTTT
AGAATGGGAGAAGGTGCATTCGGCCACCCCTCCCAAGCTGAAGCGTTTCA
TGGGCCGCCCGCAAGATTTGTCGCCAAAGGCTGCGCTGCTGTGGATTACC
GGGCAAGCCAACCGGCCGTTTGACCGACACGATTGGGTGGTGGAGAGGGA
AAATGGGAAGGAAGTGCGGTATGTCATTGATTTTTACACGGGGCAGACTG
ACCCCAAAGATCCGAAGCCTGTGTCGATGCATCTGGACGTGAGGCCTGCC
CTGGACTCGGGTGACGCGCTAAAAATGAGGGTAGGAAAGGCAGTGGACGA
ATGGAAGGAGGAGTGGTTCGGAAGGGAGGGAGGGAAGGAGGGAGTGGTAC
CGTCGTGGCTGGCGGCGGCAGCGGCGATGGTGGGAGGGGAGGGAAAGAAG
GAGGGAGGGGCGCCGCGAGCTGTTCCTGGGGACGCGCGGGCGGCCACCAA
GTGAATGGCACGAGCAGCGGATACTGAGGCTGGCGGGGGATGTCCTGTGA
AAGGCAGTGGCAGCAGCAACAGTAGCGCAAGCAACGAG
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Synonyms
Publications