jgi.p|Nanoce1779_2|162239, mRNA_7641 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|162239
Unique NamemRNA_7641
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1105
Alignment locationscaffold_20:465840..467129 +

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Properties
Property NameValue
TranscriptId162325
TrackFilteredModels2
ProteinId162239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:465840..467129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|162239gene_7641Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|162239mRNA_7641-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7641CDS_7641Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7641 ID=mRNA_7641|Name=jgi.p|Nanoce1779_2|162239|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
GTGGTCTGACCCTAAAGCGACGACGACTAGAAAATCAATGAGTTTCATAG
GTGGAGGATAACGGTGGGGCTGTGAGTGAATGGTTATTGTCAGGCAGGAG
ATAACGTGGGCACGTACCAGACAAGACTTCAAGCAAGGCCCACCCATTTG
TTGATTTTGCTACCAAGAATCTCCGAGGGTGGGGTCAAGGCTGCGTCTTG
GAACGCAAAGAAGGAAGCCCGAGCAACAGGGGAAGAAACGGTTTCTGGCG
TCCAGCCGTTGGCCAAGGCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTC
CATTACCATCACCCGCCGGGCCGTGGCCATGGGGGAAGAAAGACTGACGC
CTCAACAGAAGGCAGCGAGGACCAAGGCAAAAAAGAACACCCTCCCTCCT
TCCAACTGTCCTTCCCTCCCACCCTCCTACCCTCCTTCCACACCTCCCCG
CGTCCCCCACTATCAAGCCCACACCGGGCACAATAACGCCCGTCGAACGG
GCCTTTTCCCCTTTTCTTCCCCACCTCCCTCCCTCCCTGTCCGCGCGCAG
GAGCCGCTGCAGCAGGGACAAACGCATAGACAGGTGAAGGGAGACGCGGA
AGTGATGGACGGTGGCAAGGGAGGAAGGGAGGCAGGGAGGGAGGGAGGTG
GGCCGGGGGGCAGGAGGAGGCAGACCTTGAAAGAGAGGCGGGACAGGGTG
GCCTCCGTGTTGGAGGGTGTGGTGAAGGACAGCTTTCATCGTGAGGAAAA
GGAGAAGATATTCCGGGGAAGGGTGATGGGCATGGCCAGGAGGAGGGGGA
GGAAGGCAGGGAGGAGAGGAAGGAAAGGAGGGGAGGAGAGGAAGGAAAGG
AGGGGAGGAGAGGAAGGAAAGGAGGGGAGGAGAGGAAGGAAAGGATGATG
ATGGAGGAGCAGGAAACGGTGGTGACGCCTTTTGCATCAGCAGCAGCCAC
AGCAGCAGCGCCCTTTTTTCCGCTGGATTGGATCTGTCCAGGATATTCCT
CGCGACGTTCATGACCACCCTCAGCCATTTTCCCCTTCCAAAACCCCTGA
TCGCT
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protein sequence of jgi.p|Nanoce1779_2|162239

>mRNA_7641-protein ID=mRNA_7641-protein|Name=jgi.p|Nanoce1779_2|162239|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MGEERLTPQQKAARTKAKKNTLPPSNCPSLPPSYPPSTPPRVPHYQAHTG
HNNARRTGLFPFSSPPPSLPVRAQEPLQQGQTHRQVKGDAEVMDGGKGGR
EAGREGGGPGGRRRQTLKERRDRVASVLEGVVKDSFHREEKEKIFRGRVM
GMARRRGRKAGRRGRKGGEERKERRGGEEGKEGRRGRKG*
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mRNA from alignment at scaffold_20:465840..467129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7641 ID=mRNA_7641|Name=jgi.p|Nanoce1779_2|162239|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp|location=Sequence derived from alignment at scaffold_20:465840..467129+ (Nannochloropsis oceanica)
GTGGTCTGACCCTAAAGCGACGACGACTAGAAAATCAATGAGTTTCATAG
GTGGAGGATAACGGTGGGGCTGTGAGTGAATGGTTATTGTCAGGTAATCG
ATGAAAGGCGAGGGGGAGAGGAGGGGGGAGAGAAAGGGCAGAGGGACGAA
AAATAGTTTGTCGCTTAGGCATGAACGGTCGCATACGACTGATAAGTCAC
GGTCAGGTAATGACATTTGCCTCTCCCGGCTCATTCACTCGACTTTTTAC
TCACAACATGTATAACCTACCCGCACAGGCAGGAGATAACGTGGGCACGT
ACCAGACAAGACTTCAAGCAAGGCCCACCCATTTGTTGATTTTGCTACCA
AGAATCTCCGAGGGTGGGGTCAAGGCTGCGTCTTGGAACGCAAAGAAGGA
AGCCCGAGCAACAGGGGAAGAAACGGTTTCTGGCGTCCAGCCGTTGGCCA
AGGCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCATTACCATCACCCG
CCGGGCCGTGGCCATGGGGGAAGAAAGACTGACGCCTCAACAGAAGGCAG
CGAGGACCAAGGCAAAAAAGAACACCCTCCCTCCTTCCAACTGTCCTTCC
CTCCCACCCTCCTACCCTCCTTCCACACCTCCCCGCGTCCCCCACTATCA
AGCCCACACCGGGCACAATAACGCCCGTCGAACGGGCCTTTTCCCCTTTT
CTTCCCCACCTCCCTCCCTCCCTGTCCGCGCGCAGGAGCCGCTGCAGCAG
GGACAAACGCATAGACAGGTGAAGGGAGACGCGGAAGTGATGGACGGTGG
CAAGGGAGGAAGGGAGGCAGGGAGGGAGGGAGGTGGGCCGGGGGGCAGGA
GGAGGCAGACCTTGAAAGAGAGGCGGGACAGGGTGGCCTCCGTGTTGGAG
GGTGTGGTGAAGGACAGCTTTCATCGTGAGGAAAAGGAGAAGATATTCCG
GGGAAGGGTGATGGGCATGGCCAGGAGGAGGGGGAGGAAGGCAGGGAGGA
GAGGAAGGAAAGGAGGGGAGGAGAGGAAGGAAAGGAGGGGAGGAGAGGAA
GGAAAGGAGGGGAGGAGAGGAAGGAAAGGATGATGATGGAGGAGCAGGAA
ACGGTGGTGACGCCTTTTGCATCAGCAGCAGCCACAGCAGCAGCGCCCTT
TTTTCCGCTGGATTGGATCTGTCCAGGATATTCCTCGCGACGTTCATGAC
CACCCTCAGCCATTTTCCCCTTCCAAAACCCCTGATCGCT
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Coding sequence (CDS) from alignment at scaffold_20:465840..467129+

>mRNA_7641 ID=mRNA_7641|Name=jgi.p|Nanoce1779_2|162239|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_20:465840..467129+ (Nannochloropsis oceanica)
ATGGGGGAAGAAAGACTGACGCCTCAACAGAAGGCAGCGAGGACCAAGGC
AAAAAAGAACACCCTCCCTCCTTCCAACTGTCCTTCCCTCCCACCCTCCT
ACCCTCCTTCCACACCTCCCCGCGTCCCCCACTATCAAGCCCACACCGGG
CACAATAACGCCCGTCGAACGGGCCTTTTCCCCTTTTCTTCCCCACCTCC
CTCCCTCCCTGTCCGCGCGCAGGAGCCGCTGCAGCAGGGACAAACGCATA
GACAGGTGAAGGGAGACGCGGAAGTGATGGACGGTGGCAAGGGAGGAAGG
GAGGCAGGGAGGGAGGGAGGTGGGCCGGGGGGCAGGAGGAGGCAGACCTT
GAAAGAGAGGCGGGACAGGGTGGCCTCCGTGTTGGAGGGTGTGGTGAAGG
ACAGCTTTCATCGTGAGGAAAAGGAGAAGATATTCCGGGGAAGGGTGATG
GGCATGGCCAGGAGGAGGGGGAGGAAGGCAGGGAGGAGAGGAAGGAAAGG
AGGGGAGGAGAGGAAGGAAAGGAGGGGAGGAGAGGAAGGAAAGGAGGGGA
GGAGAGGAAGGAAAGGATGA
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Synonyms
Publications