jgi.p|Nanoce1779_2|562639, mRNA_764 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|562639
Unique Name	mRNA_764
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1677
Alignment location	scaffold_2:383227..384903 -

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Properties


Property Name	Value
TranscriptId	562725
Track	FilteredModels2
ProteinId	562639

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:383227..384903 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562639	gene_764	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_764	CDS_764	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562639	mRNA_764-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:383227..384903-
coding sequence from alignment at scaffold_2:383227..384903-

mRNA sequence

>mRNA_764 ID=mRNA_764|Name=jgi.p|Nanoce1779_2|562639|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
ATGTCGCCAATATCTCGCATCCACCAACACCGCGGGGGTCGCCCGAGATG
GCAGAAGGGCGTCCTTGTCGGCTTGTCTACCGGCCTCACCATAGTGTATG
TCATTTTCGTCGTCTTATCGGGTCGATACGCCCTGTTCCAGCTCACATCC
GAGGGTGATCGGGAGCATCACAAGATATCGCTTTTGTCTCAAGCACAAAG
CCAGCAGGGGACAAATGCTCCTCAACCACAGCCAGCAGCTCAAGCGCCAG
CAGCGAAACCTCGTTGTGATCCTAAGCCGAGTGCAGATCCAGAACATGCG
CTACAGCCACTACTATCAGCACCAGCGTTAGAAGCTGGAGTTCATTCCAT
AATCCCCATCGAGAAAGGCACTCTGGAATGTACCGACAGCCCCCCTCGCC
AACGTGGGGAGGACGGCAGCATCGTCTATTGGCGCAAGTGGACCGAAGAG
ACGATGTGGTCCAGCCCTTTCAAACCCAAAGGTGATGAGGGACCGAAGTA
TGTGACCTTTGAGCCGGATGAAGGCGGTTTTAACAACATTCGGATGGCCT
TGGAGATCTTTTTACTGTTTGCCCTCGCTACGGGCCGCACGCTGGTGCTG
CCGGATGAGTATCCGATGTACCTTTTGGGACAGGCAGGAATCATGCACGA
TTTTGACGACTTCTATGACGTTGACGGTTGGAAAAGGAATGTGGACGTGC
TCCCGATGCACAAATTTTTGGAGATAGAAGGCTTGACGGGACAGCTCAAG
AACGGAGAGATGCCACCGGGAAACGCCACCCGGTTTGATCGCCGACGGCC
CCTGTGGGAGTATATTAGGCGTGCAACAGACATGTTCCCGGTGGGACCCG
ACTCTCATGTAGTAGCCCTTGATCTGCCCACGAACATCACCACTGTAGAG
GAGCTGATGGACTACCGCCCAGACTTTGAAACATTCTCGCATGGTCGCCA
GCTGCTACAATATGGTCCCGAGCTCCAGGCCAAAAAATCATTGCACTTCA
CAAGCGCCATGGACGGTGGTAAGCGATATCTGGCTCACTTTTACAGCTTT
TTGTACTTCGCCGACCCGCAGGTGGATGCTTTCATGAAGCGTTTTGTGCG
GGATCACATGCATTACAAGGATGAGATCTTCTGCCGGGCGGCTAAGGTGG
TGGACTTACTGCATGCGGAGGGCAAGGACGGAGCTTTCGAACCCTACGAT
GCCATCCACATCCGAAGGGGAGATTTTCAATTCACAGAGACCCGGCTGGA
AGCCGAGGATATTTTCCGAACAGTGGAAGACGTGGTTGTTCCTGGGTCGC
TGGTGTACGTTGTGACGGACGAGACCAACGCCACATTCTTTGACACAGTG
CGGAATCGCTACCGATTGCGATTTTACAAGGACTTTTATGCGCCGGACGG
ATTGGGAGACATGAATCCCAACCTGGCAGGCATGGTTGAACAAATTATCG
CCTCGGGGGCGCGCACGTTCGTGGGGACATACTTCTCCACTTTTACTGGC
TACATCACACGGATGCGCGGGTACCTTAGCAAGAACCCAGGTTATTATTA
TTTGAAACCCTATAAAGACGCCTTACAATCACCAGCAAAAGAATTCTATG
CATCGGATCCAAATTTTCGTCGTGAATGGCCGGCGGCTTACGAGGGGATT
GACCAGCTAGAAATGAAAGATGATTAA

protein sequence of jgi.p|Nanoce1779_2|562639

>mRNA_764-protein ID=mRNA_764-protein|Name=jgi.p|Nanoce1779_2|562639|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MSPISRIHQHRGGRPRWQKGVLVGLSTGLTIVYVIFVVLSGRYALFQLTS
EGDREHHKISLLSQAQSQQGTNAPQPQPAAQAPAAKPRCDPKPSADPEHA
LQPLLSAPALEAGVHSIIPIEKGTLECTDSPPRQRGEDGSIVYWRKWTEE
TMWSSPFKPKGDEGPKYVTFEPDEGGFNNIRMALEIFLLFALATGRTLVL
PDEYPMYLLGQAGIMHDFDDFYDVDGWKRNVDVLPMHKFLEIEGLTGQLK
NGEMPPGNATRFDRRRPLWEYIRRATDMFPVGPDSHVVALDLPTNITTVE
ELMDYRPDFETFSHGRQLLQYGPELQAKKSLHFTSAMDGGKRYLAHFYSF
LYFADPQVDAFMKRFVRDHMHYKDEIFCRAAKVVDLLHAEGKDGAFEPYD
AIHIRRGDFQFTETRLEAEDIFRTVEDVVVPGSLVYVVTDETNATFFDTV
RNRYRLRFYKDFYAPDGLGDMNPNLAGMVEQIIASGARTFVGTYFSTFTG
YITRMRGYLSKNPGYYYLKPYKDALQSPAKEFYASDPNFRREWPAAYEGI
DQLEMKDD*

mRNA from alignment at scaffold_2:383227..384903-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_764 ID=mRNA_764|Name=jgi.p|Nanoce1779_2|562639|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at scaffold_2:383227..384903- (Nannochloropsis oceanica)
ATGTCGCCAATATCTCGCATCCACCAACACCGCGGGGGTCGCCCGAGATG
GCAGAAGGGCGTCCTTGTCGGCTTGTCTACCGGCCTCACCATAGTGTATG
TCATTTTCGTCGTCTTATCGGGTCGATACGCCCTGTTCCAGCTCACATCC
GAGGGTGATCGGGAGCATCACAAGATATCGCTTTTGTCTCAAGCACAAAG
CCAGCAGGGGACAAATGCTCCTCAACCACAGCCAGCAGCTCAAGCGCCAG
CAGCGAAACCTCGTTGTGATCCTAAGCCGAGTGCAGATCCAGAACATGCG
CTACAGCCACTACTATCAGCACCAGCGTTAGAAGCTGGAGTTCATTCCAT
AATCCCCATCGAGAAAGGCACTCTGGAATGTACCGACAGCCCCCCTCGCC
AACGTGGGGAGGACGGCAGCATCGTCTATTGGCGCAAGTGGACCGAAGAG
ACGATGTGGTCCAGCCCTTTCAAACCCAAAGGTGATGAGGGACCGAAGTA
TGTGACCTTTGAGCCGGATGAAGGCGGTTTTAACAACATTCGGATGGCCT
TGGAGATCTTTTTACTGTTTGCCCTCGCTACGGGCCGCACGCTGGTGCTG
CCGGATGAGTATCCGATGTACCTTTTGGGACAGGCAGGAATCATGCACGA
TTTTGACGACTTCTATGACGTTGACGGTTGGAAAAGGAATGTGGACGTGC
TCCCGATGCACAAATTTTTGGAGATAGAAGGCTTGACGGGACAGCTCAAG
AACGGAGAGATGCCACCGGGAAACGCCACCCGGTTTGATCGCCGACGGCC
CCTGTGGGAGTATATTAGGCGTGCAACAGACATGTTCCCGGTGGGACCCG
ACTCTCATGTAGTAGCCCTTGATCTGCCCACGAACATCACCACTGTAGAG
GAGCTGATGGACTACCGCCCAGACTTTGAAACATTCTCGCATGGTCGCCA
GCTGCTACAATATGGTCCCGAGCTCCAGGCCAAAAAATCATTGCACTTCA
CAAGCGCCATGGACGGTGGTAAGCGATATCTGGCTCACTTTTACAGCTTT
TTGTACTTCGCCGACCCGCAGGTGGATGCTTTCATGAAGCGTTTTGTGCG
GGATCACATGCATTACAAGGATGAGATCTTCTGCCGGGCGGCTAAGGTGG
TGGACTTACTGCATGCGGAGGGCAAGGACGGAGCTTTCGAACCCTACGAT
GCCATCCACATCCGAAGGGGAGATTTTCAATTCACAGAGACCCGGCTGGA
AGCCGAGGATATTTTCCGAACAGTGGAAGACGTGGTTGTTCCTGGGTCGC
TGGTGTACGTTGTGACGGACGAGACCAACGCCACATTCTTTGACACAGTG
CGGAATCGCTACCGATTGCGATTTTACAAGGACTTTTATGCGCCGGACGG
ATTGGGAGACATGAATCCCAACCTGGCAGGCATGGTTGAACAAATTATCG
CCTCGGGGGCGCGCACGTTCGTGGGGACATACTTCTCCACTTTTACTGGC
TACATCACACGGATGCGCGGGTACCTTAGCAAGAACCCAGGTTATTATTA
TTTGAAACCCTATAAAGACGCCTTACAATCACCAGCAAAAGAATTCTATG
CATCGGATCCAAATTTTCGTCGTGAATGGCCGGCGGCTTACGAGGGGATT
GACCAGCTAGAAATGAAAGATGATTAA

Coding sequence (CDS) from alignment at scaffold_2:383227..384903-

>mRNA_764 ID=mRNA_764|Name=jgi.p|Nanoce1779_2|562639|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_2:383227..384903- (Nannochloropsis oceanica)
ATGTCGCCAATATCTCGCATCCACCAACACCGCGGGGGTCGCCCGAGATG
GCAGAAGGGCGTCCTTGTCGGCTTGTCTACCGGCCTCACCATAGTGTATG
TCATTTTCGTCGTCTTATCGGGTCGATACGCCCTGTTCCAGCTCACATCC
GAGGGTGATCGGGAGCATCACAAGATATCGCTTTTGTCTCAAGCACAAAG
CCAGCAGGGGACAAATGCTCCTCAACCACAGCCAGCAGCTCAAGCGCCAG
CAGCGAAACCTCGTTGTGATCCTAAGCCGAGTGCAGATCCAGAACATGCG
CTACAGCCACTACTATCAGCACCAGCGTTAGAAGCTGGAGTTCATTCCAT
AATCCCCATCGAGAAAGGCACTCTGGAATGTACCGACAGCCCCCCTCGCC
AACGTGGGGAGGACGGCAGCATCGTCTATTGGCGCAAGTGGACCGAAGAG
ACGATGTGGTCCAGCCCTTTCAAACCCAAAGGTGATGAGGGACCGAAGTA
TGTGACCTTTGAGCCGGATGAAGGCGGTTTTAACAACATTCGGATGGCCT
TGGAGATCTTTTTACTGTTTGCCCTCGCTACGGGCCGCACGCTGGTGCTG
CCGGATGAGTATCCGATGTACCTTTTGGGACAGGCAGGAATCATGCACGA
TTTTGACGACTTCTATGACGTTGACGGTTGGAAAAGGAATGTGGACGTGC
TCCCGATGCACAAATTTTTGGAGATAGAAGGCTTGACGGGACAGCTCAAG
AACGGAGAGATGCCACCGGGAAACGCCACCCGGTTTGATCGCCGACGGCC
CCTGTGGGAGTATATTAGGCGTGCAACAGACATGTTCCCGGTGGGACCCG
ACTCTCATGTAGTAGCCCTTGATCTGCCCACGAACATCACCACTGTAGAG
GAGCTGATGGACTACCGCCCAGACTTTGAAACATTCTCGCATGGTCGCCA
GCTGCTACAATATGGTCCCGAGCTCCAGGCCAAAAAATCATTGCACTTCA
CAAGCGCCATGGACGGTGGTAAGCGATATCTGGCTCACTTTTACAGCTTT
TTGTACTTCGCCGACCCGCAGGTGGATGCTTTCATGAAGCGTTTTGTGCG
GGATCACATGCATTACAAGGATGAGATCTTCTGCCGGGCGGCTAAGGTGG
TGGACTTACTGCATGCGGAGGGCAAGGACGGAGCTTTCGAACCCTACGAT
GCCATCCACATCCGAAGGGGAGATTTTCAATTCACAGAGACCCGGCTGGA
AGCCGAGGATATTTTCCGAACAGTGGAAGACGTGGTTGTTCCTGGGTCGC
TGGTGTACGTTGTGACGGACGAGACCAACGCCACATTCTTTGACACAGTG
CGGAATCGCTACCGATTGCGATTTTACAAGGACTTTTATGCGCCGGACGG
ATTGGGAGACATGAATCCCAACCTGGCAGGCATGGTTGAACAAATTATCG
CCTCGGGGGCGCGCACGTTCGTGGGGACATACTTCTCCACTTTTACTGGC
TACATCACACGGATGCGCGGGTACCTTAGCAAGAACCCAGGTTATTATTA
TTTGAAACCCTATAAAGACGCCTTACAATCACCAGCAAAAGAATTCTATG
CATCGGATCCAAATTTTCGTCGTGAATGGCCGGCGGCTTACGAGGGGATT
GACCAGCTAGAAATGAAAGATGATTAA

Synonyms

Publications