jgi.p|Nanoce1779_2|599465, mRNA_7639 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599465
Unique NamemRNA_7639
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length432
Alignment locationscaffold_20:453912..454343 -

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Properties
Property NameValue
TranscriptId599551
TrackFilteredModels2
ProteinId599465
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:453912..454343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599465gene_7639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599465mRNA_7639-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7639CDS_7639Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7639 ID=mRNA_7639|Name=jgi.p|Nanoce1779_2|599465|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
CTTTTATTCTCTACTTCTACATGTGTGTACATATATGCACATCAGGCGAC
CGATGCGTCCAAGGGAGGAAGGGAGGAAGAAAGGGAGAGGGGGAGAGAGG
ACAAGGTAGGGCACGCGCATTACACTTAAGTTTGAAGTCTACTTCATCCG
ACGCATGCATACAATCACACAGATGATCAATCTCCTCCTTCTATATCCTT
CTTGCCTTACCTATTTCTCCTCATCTACCGCACTGGAGGCTCCGTTTCGT
ATATATCTTCCCTTTCGCTTCTCATCTCATCCTTCTCTTCCCTTTCTCAG
TATCCTTCTTACACCTTCAATGTCACCTATCCTTGTTTCTATTTCCAACG
AAATTATCTCCTCTGTCTCCCTGCCCGTCTTCTCTCTGTGTACCTCCTTT
TACCTATAAAAACGTCGAGCCTCCCGCTGGTC
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protein sequence of jgi.p|Nanoce1779_2|599465

>mRNA_7639-protein ID=mRNA_7639-protein|Name=jgi.p|Nanoce1779_2|599465|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MHTITQMINLLLLYPSCLTYFSSSTALEAPFRIYLPFRFSSHPSLPFLSI
LLTPSMSPILVSISNEIISSVSLPVFSLCTSFYL*
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mRNA from alignment at scaffold_20:453912..454343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7639 ID=mRNA_7639|Name=jgi.p|Nanoce1779_2|599465|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at scaffold_20:453912..454343- (Nannochloropsis oceanica)
CTTTTATTCTCTACTTCTACATGTGTGTACATATATGCACATCAGGCGAC
CGATGCGTCCAAGGGAGGAAGGGAGGAAGAAAGGGAGAGGGGGAGAGAGG
ACAAGGTAGGGCACGCGCATTACACTTAAGTTTGAAGTCTACTTCATCCG
ACGCATGCATACAATCACACAGATGATCAATCTCCTCCTTCTATATCCTT
CTTGCCTTACCTATTTCTCCTCATCTACCGCACTGGAGGCTCCGTTTCGT
ATATATCTTCCCTTTCGCTTCTCATCTCATCCTTCTCTTCCCTTTCTCAG
TATCCTTCTTACACCTTCAATGTCACCTATCCTTGTTTCTATTTCCAACG
AAATTATCTCCTCTGTCTCCCTGCCCGTCTTCTCTCTGTGTACCTCCTTT
TACCTATAAAAACGTCGAGCCTCCCGCTGGTC
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Coding sequence (CDS) from alignment at scaffold_20:453912..454343-

>mRNA_7639 ID=mRNA_7639|Name=jgi.p|Nanoce1779_2|599465|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_20:453912..454343- (Nannochloropsis oceanica)
ATGCATACAATCACACAGATGATCAATCTCCTCCTTCTATATCCTTCTTG
CCTTACCTATTTCTCCTCATCTACCGCACTGGAGGCTCCGTTTCGTATAT
ATCTTCCCTTTCGCTTCTCATCTCATCCTTCTCTTCCCTTTCTCAGTATC
CTTCTTACACCTTCAATGTCACCTATCCTTGTTTCTATTTCCAACGAAAT
TATCTCCTCTGTCTCCCTGCCCGTCTTCTCTCTGTGTACCTCCTTTTACC
TATAA
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Synonyms
Publications