jgi.p|Nanoce1779_2|599460, mRNA_7638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599460
Unique NamemRNA_7638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length799
Alignment locationscaffold_20:446853..447651 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599546
TrackFilteredModels2
ProteinId599460
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:446853..447651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599460gene_7638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599460mRNA_7638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7638CDS_7638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7638 ID=mRNA_7638|Name=jgi.p|Nanoce1779_2|599460|organism=Nannochloropsis oceanica|type=mRNA|length=799bp
CCCCCCCCCCCCCCGGGACCTGGTCCAATTGTCCCGGTCCACGACACCCG
CTTCCTCCCTCCCCCCCTCGCCCCCAGCACTTATTTCGTCCCTTCTTACT
TCGATCCCGTGGCCCGCCAGTGGTTTGGTTGTTTTTACGGCCCTGAAGTC
CCGATGGAGGGAGGAAGGGAGGGAACGAGGGGGAAGCCGCAAAGAGGGCA
ATACACTGGCGTTGGGATGGAAGGAATGCAGCAGCAGCAGCAGCAGCAGC
GGCAGCTGCCGCCGCCATCGTTGCAGCAACCGTACTATAAACAGTATTCG
CCGCCGCTGCCACACCACCACCACCACCACCACCACCACCAGCAGCAGCA
GCAGCAAGCGATTGATATGTATGGCTATGGCAAGTACCCGATTCCTGTAT
ATCCTTCCCTCCCTCCTTCGAGCTTTCCTCGCCACTATACGTAGACGGAG
AAGCGAGGGAAAGGGAAGGGAGAAGGAAAGGATTAAGTGCACACATTTAA
CATTGAACGTTGGAAGGAGGTGGATATGGAGGGAGGAGTGGAAGGGAGGG
AGGGAATGGATGTCCGCGTGGGAAAATCGATATTTGACTGCGATCGATAG
GAAGATAGAGCGAGGGGGCCGGGAGAAATGTACTGTACATGGAGATATAA
TCAGAAAAGTAAATAGAAGAAGGGGAGATAGCAAGGGATGAAAGGAGGAA
GCAATGGAGTCCATTTATTAGACGACAACCAACACCAACACCGACAGGGG
AGACCCCCAAAGCAATCTTCAAAGCAGAAACGACCAAAAGGATAGAGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|599460

>mRNA_7638-protein ID=mRNA_7638-protein|Name=jgi.p|Nanoce1779_2|599460|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MAMASTRFLYILPSLLRAFLATIRRRRSEGKGREKERIKCTHLTLNVGRR
WIWREEWKGGREWMSAWENRYLTAIDRKIERGGREKCTVHGDIIRKVNRR
RGDSKG*
back to top

mRNA from alignment at scaffold_20:446853..447651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7638 ID=mRNA_7638|Name=jgi.p|Nanoce1779_2|599460|organism=Nannochloropsis oceanica|type=mRNA|length=799bp|location=Sequence derived from alignment at scaffold_20:446853..447651+ (Nannochloropsis oceanica)
CCCCCCCCCCCCCCGGGACCTGGTCCAATTGTCCCGGTCCACGACACCCG
CTTCCTCCCTCCCCCCCTCGCCCCCAGCACTTATTTCGTCCCTTCTTACT
TCGATCCCGTGGCCCGCCAGTGGTTTGGTTGTTTTTACGGCCCTGAAGTC
CCGATGGAGGGAGGAAGGGAGGGAACGAGGGGGAAGCCGCAAAGAGGGCA
ATACACTGGCGTTGGGATGGAAGGAATGCAGCAGCAGCAGCAGCAGCAGC
GGCAGCTGCCGCCGCCATCGTTGCAGCAACCGTACTATAAACAGTATTCG
CCGCCGCTGCCACACCACCACCACCACCACCACCACCACCAGCAGCAGCA
GCAGCAAGCGATTGATATGTATGGCTATGGCAAGTACCCGATTCCTGTAT
ATCCTTCCCTCCCTCCTTCGAGCTTTCCTCGCCACTATACGTAGACGGAG
AAGCGAGGGAAAGGGAAGGGAGAAGGAAAGGATTAAGTGCACACATTTAA
CATTGAACGTTGGAAGGAGGTGGATATGGAGGGAGGAGTGGAAGGGAGGG
AGGGAATGGATGTCCGCGTGGGAAAATCGATATTTGACTGCGATCGATAG
GAAGATAGAGCGAGGGGGCCGGGAGAAATGTACTGTACATGGAGATATAA
TCAGAAAAGTAAATAGAAGAAGGGGAGATAGCAAGGGATGAAAGGAGGAA
GCAATGGAGTCCATTTATTAGACGACAACCAACACCAACACCGACAGGGG
AGACCCCCAAAGCAATCTTCAAAGCAGAAACGACCAAAAGGATAGAGAC
back to top

Coding sequence (CDS) from alignment at scaffold_20:446853..447651+

>mRNA_7638 ID=mRNA_7638|Name=jgi.p|Nanoce1779_2|599460|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_20:446853..447651+ (Nannochloropsis oceanica)
ATGGCTATGGCAAGTACCCGATTCCTGTATATCCTTCCCTCCCTCCTTCG
AGCTTTCCTCGCCACTATACGTAGACGGAGAAGCGAGGGAAAGGGAAGGG
AGAAGGAAAGGATTAAGTGCACACATTTAACATTGAACGTTGGAAGGAGG
TGGATATGGAGGGAGGAGTGGAAGGGAGGGAGGGAATGGATGTCCGCGTG
GGAAAATCGATATTTGACTGCGATCGATAGGAAGATAGAGCGAGGGGGCC
GGGAGAAATGTACTGTACATGGAGATATAATCAGAAAAGTAAATAGAAGA
AGGGGAGATAGCAAGGGATGA
back to top
Synonyms
Publications