jgi.p|Nanoce1779_2|161991, mRNA_7635 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|161991
Unique NamemRNA_7635
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1155
Alignment locationscaffold_20:439931..441085 +

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Properties
Property NameValue
TranscriptId162077
TrackFilteredModels2
ProteinId161991
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:439931..441085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|161991gene_7635Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|161991mRNA_7635-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7635CDS_7635Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7635 ID=mRNA_7635|Name=jgi.p|Nanoce1779_2|161991|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
CCTTACCTCCTTCCCTTCCCGTGATGTCAGTCTATAATATCATTCATATC
TATGTAAACTGGAAGTCCACGACTGTCTTTGCTGCGTCTTCAATTCTCGC
TACTCTCTCTCCCCTCCCCCGTCACTCTCTCTTTCTCTACACCCCTCCCT
GTCACACACTGTCTCTCCCCCCCTCCAAAACAACTCATAAATACGCTCTT
CCTCCCTTCCTTCCCCCTTCTTTCCCTCCCTCCCTCCTTACGCCCTCTCT
GAACCCATATGGTTACACATAGAATCCCCAGACATGCTCCAGTTTCCTCC
CACAGTCCCTCCCTCCCTTCTTTTCTCTTCCTTCCATCCGTATATTGCCC
CTGCCCCAAAAACCCTTTACCCTACCCCTTCGACCCCTCCCTCCCTCCCT
CTCCCCCTACCCCTCTTCTTCCCGCAGATCGTAGTTTGCGATTCGCTCCA
GAGAGAACATGGCAATCGACGACCGAGTTCCCAACCCTCCCCCTCCCTCC
TTCTTTCCTTCCTTCCCTCCATCTTTCCTTCTCTCCCTCCCTCTCTCCCT
CCCTCACACATCCGCTTCCGGATAGGGTCAAGGTTTTTCTTTTTCAAGTG
GACCGTAACCCATCCCCGTTTCCTTCTCCTTACGCAAAGCTGCTGGTAAA
CCTCCCCACAACCGACGACAGCACATTCTTCAACGACTCCATCAGCGAGG
GAGCCGCCTTCATCCGCTTCCCCATTCCGTCTACACTGGTCGAGTCCCGG
CCACTGCTTTTGTTCTTGCCCCCTTTCCCCTTCTTCCCCCCCTCCGTCGA
CGCCGCCGCCAAGCGAGACGATGCTCGTCGAGTCTCACTTGCGTTGAGAC
GAGCTCCTCCTCCTCCTCCTCCTCCTCCTGCAGCCAGTGCCGCCTTCTTC
TGCTGCTGCTTTTGGATCGCGGCGGCAGCTGCCGCACCAGCAGCGGCAGG
CTTTTTCTTATGAGAAATCGGGAGCTTGTGGATTGCTTTCTTACCGACGC
CACTGCCGCTCTTGCTGCCCCCACTCTTCTTCCCGTGAGAGGGCATGTAA
CGCCCGGTGTCCTTCATGGAACGACCCGAGGAGGAGGAAGAGGACGACTT
GCCCGCACTCTTCTTAGAACTTTTGCTGCCACTGCTTTTGGACACCATTT
TACTG
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protein sequence of jgi.p|Nanoce1779_2|161991

>mRNA_7635-protein ID=mRNA_7635-protein|Name=jgi.p|Nanoce1779_2|161991|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MVTHRIPRHAPVSSHSPSLPSFLFLPSVYCPCPKNPLPYPFDPSLPPSPP
TPLLPADRSLRFAPERTWQSTTEFPTLPLPPSFLPSLHLSFSPSLSPSLT
HPLPDRVKVFLFQVDRNPSPFPSPYAKLLVNLPTTDDSTFFNDSISEGAA
FIRFPIPSTLVESRPLLLFLPPFPFFPPSVDAAAKRDDARRVSLALRRAP
PPPPPPPAASAAFFCCCFWIAAAAAAPAAAGFFL*
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mRNA from alignment at scaffold_20:439931..441085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7635 ID=mRNA_7635|Name=jgi.p|Nanoce1779_2|161991|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_20:439931..441085+ (Nannochloropsis oceanica)
CCTTACCTCCTTCCCTTCCCGTGATGTCAGTCTATAATATCATTCATATC
TATGTAAACTGGAAGTCCACGACTGTCTTTGCTGCGTCTTCAATTCTCGC
TACTCTCTCTCCCCTCCCCCGTCACTCTCTCTTTCTCTACACCCCTCCCT
GTCACACACTGTCTCTCCCCCCCTCCAAAACAACTCATAAATACGCTCTT
CCTCCCTTCCTTCCCCCTTCTTTCCCTCCCTCCCTCCTTACGCCCTCTCT
GAACCCATATGGTTACACATAGAATCCCCAGACATGCTCCAGTTTCCTCC
CACAGTCCCTCCCTCCCTTCTTTTCTCTTCCTTCCATCCGTATATTGCCC
CTGCCCCAAAAACCCTTTACCCTACCCCTTCGACCCCTCCCTCCCTCCCT
CTCCCCCTACCCCTCTTCTTCCCGCAGATCGTAGTTTGCGATTCGCTCCA
GAGAGAACATGGCAATCGACGACCGAGTTCCCAACCCTCCCCCTCCCTCC
TTCTTTCCTTCCTTCCCTCCATCTTTCCTTCTCTCCCTCCCTCTCTCCCT
CCCTCACACATCCGCTTCCGGATAGGGTCAAGGTTTTTCTTTTTCAAGTG
GACCGTAACCCATCCCCGTTTCCTTCTCCTTACGCAAAGCTGCTGGTAAA
CCTCCCCACAACCGACGACAGCACATTCTTCAACGACTCCATCAGCGAGG
GAGCCGCCTTCATCCGCTTCCCCATTCCGTCTACACTGGTCGAGTCCCGG
CCACTGCTTTTGTTCTTGCCCCCTTTCCCCTTCTTCCCCCCCTCCGTCGA
CGCCGCCGCCAAGCGAGACGATGCTCGTCGAGTCTCACTTGCGTTGAGAC
GAGCTCCTCCTCCTCCTCCTCCTCCTCCTGCAGCCAGTGCCGCCTTCTTC
TGCTGCTGCTTTTGGATCGCGGCGGCAGCTGCCGCACCAGCAGCGGCAGG
CTTTTTCTTATGAGAAATCGGGAGCTTGTGGATTGCTTTCTTACCGACGC
CACTGCCGCTCTTGCTGCCCCCACTCTTCTTCCCGTGAGAGGGCATGTAA
CGCCCGGTGTCCTTCATGGAACGACCCGAGGAGGAGGAAGAGGACGACTT
GCCCGCACTCTTCTTAGAACTTTTGCTGCCACTGCTTTTGGACACCATTT
TACTG
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Coding sequence (CDS) from alignment at scaffold_20:439931..441085+

>mRNA_7635 ID=mRNA_7635|Name=jgi.p|Nanoce1779_2|161991|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_20:439931..441085+ (Nannochloropsis oceanica)
ATGGTTACACATAGAATCCCCAGACATGCTCCAGTTTCCTCCCACAGTCC
CTCCCTCCCTTCTTTTCTCTTCCTTCCATCCGTATATTGCCCCTGCCCCA
AAAACCCTTTACCCTACCCCTTCGACCCCTCCCTCCCTCCCTCTCCCCCT
ACCCCTCTTCTTCCCGCAGATCGTAGTTTGCGATTCGCTCCAGAGAGAAC
ATGGCAATCGACGACCGAGTTCCCAACCCTCCCCCTCCCTCCTTCTTTCC
TTCCTTCCCTCCATCTTTCCTTCTCTCCCTCCCTCTCTCCCTCCCTCACA
CATCCGCTTCCGGATAGGGTCAAGGTTTTTCTTTTTCAAGTGGACCGTAA
CCCATCCCCGTTTCCTTCTCCTTACGCAAAGCTGCTGGTAAACCTCCCCA
CAACCGACGACAGCACATTCTTCAACGACTCCATCAGCGAGGGAGCCGCC
TTCATCCGCTTCCCCATTCCGTCTACACTGGTCGAGTCCCGGCCACTGCT
TTTGTTCTTGCCCCCTTTCCCCTTCTTCCCCCCCTCCGTCGACGCCGCCG
CCAAGCGAGACGATGCTCGTCGAGTCTCACTTGCGTTGAGACGAGCTCCT
CCTCCTCCTCCTCCTCCTCCTGCAGCCAGTGCCGCCTTCTTCTGCTGCTG
CTTTTGGATCGCGGCGGCAGCTGCCGCACCAGCAGCGGCAGGCTTTTTCT
TATGA
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Synonyms
Publications