jgi.p|Nanoce1779_2|672888, mRNA_7634 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672888
Unique NamemRNA_7634
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1012
Alignment locationscaffold_20:438136..439566 +

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Properties
Property NameValue
TranscriptId672974
TrackFilteredModels2
ProteinId672888
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:438136..439566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672888gene_7634Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672888mRNA_7634-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7634CDS_7634Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7634 ID=mRNA_7634|Name=jgi.p|Nanoce1779_2|672888|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp
ATGAACCTCTTAGTCGATCCTGTTATGCACGACCTTACATTCGGCGTCCC
CTCTCTCATTCGTGGTCAAAAGAAGGTGCTCAATGGTCCCGCCGTCCTAG
AGCAAGTGGGCCCATCCATCGACCACCTCCTAATTTCCCAAGGATTCGAC
GACCACTGTCAGCCTGAATCGATGCAGGCCGCTGCAACTCTCCTCCCCCG
CTCAGCTAAGGTCGTGGCCCCTCCCTCCGCTGCGGGTGTCCTCACGCAAT
ACTTCTCAGAAGATCGGATCGTGTACTTGTCGCCTGGACAGAGCTGTGTC
TTGGAAGGGGGGAGGGAGGGAGGGCGGGTTATGGTGACGGCGACGACGGG
CGATACGCTAGGCCCTCCCTGGCAGGCACCTGAGAATGGATACTTGCTTC
GATGGGGGGAGGAGGGAGGGAAGGAGGGAGGGCAATCGTTTCGTTCGTTG
TATTATGAACCGCATTGCCGGTATTCAGTGGAGGAGTTTGAGGCCCTTCG
GCTTCAAGCCGACATCGTCATCACACCCGTCGTCCAACAAATCCTCTTTG
GGGCTTTCCCCCTCGTCGATGGGCAGGCCAAGGCCGCTGCGCTCGCCCGC
GCTCTGAAAGCGAAGGTGGTGGTGCCCATGAACAACGGTGACATCGACTT
ATCCCCTTCACGCTTACCCTTGGATAAACTGATTAGGAAACGGGGCACTG
TGGCCGAGTTTAGGCGTTGTTTGACGGAGAGCTGGCCGTCGGCGAAGGTG
GTGGAGACCCCGGTGGGGGAGTGTGTGCGTCTGTGAAGAAGTCAGTGATG
CAATAGAATGGAAAGTAACGGTCAAAAAGAGAGAAAATGAGTGTGGGTGT
CAGACCTGCTAATGCTGTTGGTTTTTGGCTTGGTTTCGGTTTTGATTTTG
TGGGTTGCTTTTGAATGATGTCGCTCGCTGGTGAGGGAGAGCGAGGGCAG
GAGGAGTGTGAAGACGCCCGGGAAAGGCCGACCGGGGAGAGGAGGAGGGA
GAGAGGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|672888

>mRNA_7634-protein ID=mRNA_7634-protein|Name=jgi.p|Nanoce1779_2|672888|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MNLLVDPVMHDLTFGVPSLIRGQKKVLNGPAVLEQVGPSIDHLLISQGFD
DHCQPESMQAAATLLPRSAKVVAPPSAAGVLTQYFSEDRIVYLSPGQSCV
LEGGREGGRVMVTATTGDTLGPPWQAPENGYLLRWGEEGGKEGGQSFRSL
YYEPHCRYSVEEFEALRLQADIVITPVVQQILFGAFPLVDGQAKAAALAR
ALKAKVVVPMNNGDIDLSPSRLPLDKLIRKRGTVAEFRRCLTESWPSAKV
VETPVGECVRL*
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mRNA from alignment at scaffold_20:438136..439566+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7634 ID=mRNA_7634|Name=jgi.p|Nanoce1779_2|672888|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at scaffold_20:438136..439566+ (Nannochloropsis oceanica)
ATGAACCTCTTAGTCGATCCTGTTATGCACGACCTTACATTCGGCGTCCC
CTCTCTCATTCGTGGTCAAAAGAAGGTGCTCAATGGTCCCGCCGTCCTAG
AGCAAGTGGGCCCATCCATCGACCACCTCCTAATTTCCCAAGGATTCGAC
GACCACTGTCAGCCTGAATCGATGCAGGCCGCTGCAACTCTCCTCCCCCG
CTCAGCTAAGGTCGTGGCCCCTCCCTCCGCTGCGGGTGTCCTCACGCAAT
ACTTCTCAGAAGATCGGATCGTGTACTTGTCGCCTGGACAGAGCTGTGTC
TTGGAAGGGGGGAGGGAGGGAGGGCGGGTTATGGTGACGGCGACGACGGG
CGATACGCTAGGCCCTCCCTGGCAGGCACCTGAGAATGGATACTTGCTTC
GATGGGGGGAGGAGGGAGGGAAGGAGGGAGGGCAATCGTTTCGTTCGTTG
TATTATGAACCGCATTGCCGGTATTCAGTGGAGGAGTTTGAGGTGAGGGA
GGGAGGGAGGGAGGGAGGGGAGGAGGGAGGGGGCGGGTTGAAGTAATTTG
ACAGAAGAAAAGAAAGAGAGAGAGACACACACACAGGCAGACAGAGAGAG
GGAGAGAGAGTTTAATATAGGAGGAAGGGGAAAGAGATAATTTTGACAGC
TTACGATGGTAACTCTTGAAAATCTTTGGTGCCTTCAACCCGTTCCCTCC
CCCCCCCTTCCTCCTTCCCTCCCTCGTCCAGGCCCTTCGGCTTCAAGCCG
ACATCGTCATCACACCCGTCGTCCAACAAATCCTCTTTGGGGCTTTCCCC
CTCGTCGATGGGCAGGTGCGTGGGTTTAGTTGTGTGCTGTTATCTGTTAC
ACCCACCTCGCCCTTGTGCCTCTGTCTCTGCTCCTGCCGTTTTTCTCATC
TTTAAAACCGGCTCTTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTTTCCC
TTCTCACCTTCAATGTCTCCTTCCTTCCTTCCTAACCTCCCTCAGGCCAA
GGCCGCTGCGCTCGCCCGCGCTCTGAAAGCGAAGGTGGTGGTGCCCATGA
ACAACGGTGACATCGACTTATCCCCTTCACGCTTACCCTTGGATAAACTG
ATTAGGAAACGGGGCACTGTGGCCGAGTTTAGGCGTTGTTTGACGGAGAG
CTGGCCGTCGGCGAAGGTGGTGGAGACCCCGGTGGGGGAGTGTGTGCGTC
TGTGAAGAAGTCAGTGATGCAATAGAATGGAAAGTAACGGTCAAAAAGAG
AGAAAATGAGTGTGGGTGTCAGACCTGCTAATGCTGTTGGTTTTTGGCTT
GGTTTCGGTTTTGATTTTGTGGGTTGCTTTTGAATGATGTCGCTCGCTGG
TGAGGGAGAGCGAGGGCAGGAGGAGTGTGAAGACGCCCGGGAAAGGCCGA
CCGGGGAGAGGAGGAGGGAGAGAGGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_20:438136..439566+

>mRNA_7634 ID=mRNA_7634|Name=jgi.p|Nanoce1779_2|672888|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_20:438136..439566+ (Nannochloropsis oceanica)
ATGAACCTCTTAGTCGATCCTGTTATGCACGACCTTACATTCGGCGTCCC
CTCTCTCATTCGTGGTCAAAAGAAGGTGCTCAATGGTCCCGCCGTCCTAG
AGCAAGTGGGCCCATCCATCGACCACCTCCTAATTTCCCAAGGATTCGAC
GACCACTGTCAGCCTGAATCGATGCAGGCCGCTGCAACTCTCCTCCCCCG
CTCAGCTAAGGTCGTGGCCCCTCCCTCCGCTGCGGGTGTCCTCACGCAAT
ACTTCTCAGAAGATCGGATCGTGTACTTGTCGCCTGGACAGAGCTGTGTC
TTGGAAGGGGGGAGGGAGGGAGGGCGGGTTATGGTGACGGCGACGACGGG
CGATACGCTAGGCCCTCCCTGGCAGGCACCTGAGAATGGATACTTGCTTC
GATGGGGGGAGGAGGGAGGGAAGGAGGGAGGGCAATCGTTTCGTTCGTTG
TATTATGAACCGCATTGCCGGTATTCAGTGGAGGAGTTTGAGGCCCTTCG
GCTTCAAGCCGACATCGTCATCACACCCGTCGTCCAACAAATCCTCTTTG
GGGCTTTCCCCCTCGTCGATGGGCAGGCCAAGGCCGCTGCGCTCGCCCGC
GCTCTGAAAGCGAAGGTGGTGGTGCCCATGAACAACGGTGACATCGACTT
ATCCCCTTCACGCTTACCCTTGGATAAACTGATTAGGAAACGGGGCACTG
TGGCCGAGTTTAGGCGTTGTTTGACGGAGAGCTGGCCGTCGGCGAAGGTG
GTGGAGACCCCGGTGGGGGAGTGTGTGCGTCTGTGAATGAACCTCTTAGT
CGATCCTGTTATGCACGACCTTACATTCGGCGTCCCCTCTCTCATTCGTG
GTCAAAAGAAGGTGCTCAATGGTCCCGCCGTCCTAGAGCAAGTGGGCCCA
TCCATCGACCACCTCCTAATTTCCCAAGGATTCGACGACCACTGTCAGCC
TGAATCGATGCAGGCCGCTGCAACTCTCCTCCCCCGCTCAGCTAAGGTCG
TGGCCCCTCCCTCCGCTGCGGGTGTCCTCACGCAATACTTCTCAGAAGAT
CGGATCGTGTACTTGTCGCCTGGACAGAGCTGTGTCTTGGAAGGGGGGAG
GGAGGGAGGGCGGGTTATGGTGACGGCGACGACGGGCGATACGCTAGGCC
CTCCCTGGCAGGCACCTGAGAATGGATACTTGCTTCGATGGGGGGAGGAG
GGAGGGAAGGAGGGAGGGCAATCGTTTCGTTCGTTGTATTATGAACCGCA
TTGCCGGTATTCAGTGGAGGAGTTTGAGGCCCTTCGGCTTCAAGCCGACA
TCGTCATCACACCCGTCGTCCAACAAATCCTCTTTGGGGCTTTCCCCCTC
GTCGATGGGCAGGCCAAGGCCGCTGCGCTCGCCCGCGCTCTGAAAGCGAA
GGTGGTGGTGCCCATGAACAACGGTGACATCGACTTATCCCCTTCACGCT
TACCCTTGGATAAACTGATTAGGAAACGGGGCACTGTGGCCGAGTTTAGG
CGTTGTTTGACGGAGAGCTGGCCGTCGGCGAAGGTGGTGGAGACCCCGGT
GGGGGAGTGTGTGCGTCTGTGAATGAACCTCTTAGTCGATCCTGTTATGC
ACGACCTTACATTCGGCGTCCCCTCTCTCATTCGTGGTCAAAAGAAGGTG
CTCAATGGTCCCGCCGTCCTAGAGCAAGTGGGCCCATCCATCGACCACCT
CCTAATTTCCCAAGGATTCGACGACCACTGTCAGCCTGAATCGATGCAGG
CCGCTGCAACTCTCCTCCCCCGCTCAGCTAAGGTCGTGGCCCCTCCCTCC
GCTGCGGGTGTCCTCACGCAATACTTCTCAGAAGATCGGATCGTGTACTT
GTCGCCTGGACAGAGCTGTGTCTTGGAAGGGGGGAGGGAGGGAGGGCGGG
TTATGGTGACGGCGACGACGGGCGATACGCTAGGCCCTCCCTGGCAGGCA
CCTGAGAATGGATACTTGCTTCGATGGGGGGAGGAGGGAGGGAAGGAGGG
AGGGCAATCGTTTCGTTCGTTGTATTATGAACCGCATTGCCGGTATTCAG
TGGAGGAGTTTGAGGCCCTTCGGCTTCAAGCCGACATCGTCATCACACCC
GTCGTCCAACAAATCCTCTTTGGGGCTTTCCCCCTCGTCGATGGGCAGGC
CAAGGCCGCTGCGCTCGCCCGCGCTCTGAAAGCGAAGGTGGTGGTGCCCA
TGAACAACGGTGACATCGACTTATCCCCTTCACGCTTACCCTTGGATAAA
CTGATTAGGAAACGGGGCACTGTGGCCGAGTTTAGGCGTTGTTTGACGGA
GAGCTGGCCGTCGGCGAAGGTGGTGGAGACCCCGGTGGGGGAGTGTGTGC
GTCTGTGA
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Synonyms
Publications