jgi.p|Nanoce1779_2|632389, mRNA_7630 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632389
Unique NamemRNA_7630
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length913
Alignment locationscaffold_20:423101..424401 +

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Properties
Property NameValue
TranscriptId632475
TrackFilteredModels2
ProteinId632389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:423101..424401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632389gene_7630Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632389mRNA_7630-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7630CDS_7630Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7630 ID=mRNA_7630|Name=jgi.p|Nanoce1779_2|632389|organism=Nannochloropsis oceanica|type=mRNA|length=913bp
GGGAGGAGGAGTTCAAAGGAAAAAATTAATGGTGCCTCCTGCACCAGCGA
TAGTGGGAGCAGTGGCAGCAGCTGAGGTGGGGGAAAACGGAGGAGGGAAA
GCTGAAGGAGAGGAGGAAGGAGATGGGGGAGAGGAAGGTGGCGGGGTGCG
GGCAGCGCCGGCTCAGGCTTTGACGCAGAAGAAAGTGCAAGCCATGATAA
AGCAGCAGAAATTGAAGAAGGAAAGGGAAAAAAAGAAGGAGGAGAAAGAG
AGGGAAAAGAAGGAAAAGGAGGAAGAGAAGAAGATGGTAAAGGAAGAGGA
GAAGCTGAGGAAGAAGGAGGAGAAGGTGCAAGAGAAAAAGGAAAGGAAAG
CTCACAAGGTGAATGCGAAGGATGTCAAGAAGAAGGAGGGCACGGACGCC
AGCAAGGACGGAGGAAGAAGGGGGGAAGAAGAAGAAGATGGCTCGGTTTC
GTCTTTATCAGTGATGGTAGGGAAGAAGTGCGGGCGTCCACCTGGCAGCG
GGACGAAGGCCGCAGCTGCAGCAGCAGCAGCATCATCACCAGCAGCAACT
GCGGCAGTGAAGGACGGTGAAAAAGACCGAGGAGGAGAGGGAAAAGATGA
AGAGACGAAGATGGAGGAGGAGGAAGGAGAGGAGGAGAGCATGGAAATAG
AGGATGAGTCGGAGCAGAAGCAGGAAGAGGAGCAACGTCAAATGGACGCG
CGAGGGAAGCAGCAGCAGCAGCAGCACCAGCAGGCGCAATTAGAAAAGGA
GGAGGAAAATAAGAAAGAGACAGAGGAGAAGCCGAAGAAGAAGCTGACCA
TCAACCTTAGTGCACCTTTCGCTACGGCTTTGGGGGGGGTTAAGGAGGGG
GAGGGAACGGGGCAAGAAATGGATGGGGAAGTGGTGAAAAAGCAACGGAA
TGGCAGCAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|632389

>mRNA_7630-protein ID=mRNA_7630-protein|Name=jgi.p|Nanoce1779_2|632389|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MVPPAPAIVGAVAAAEVGENGGGKAEGEEEGDGGEEGGGVRAAPAQALTQ
KKVQAMIKQQKLKKEREKKKEEKEREKKEKEEEKKMVKEEEKLRKKEEKV
QEKKERKAHKVNAKDVKKKEGTDASKDGGRRGEEEEDGSVSSLSVMVGKK
CGRPPGSGTKAAAAAAAASSPAATAAVKDGEKDRGGEGKDEETKMEEEEG
EEESMEIEDESEQKQEEEQRQMDARGKQQQQQHQQAQLEKEEENKKETEE
KPKKKLTINLSAPFATALGGVKEGEGTGQEMDGEVVKKQRNGSK*
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mRNA from alignment at scaffold_20:423101..424401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7630 ID=mRNA_7630|Name=jgi.p|Nanoce1779_2|632389|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_20:423101..424401+ (Nannochloropsis oceanica)
GGGAGGAGGAGTTCAAAGGAAAAAATTAATGGTGCCTCCTGCACCAGCGA
TAGTGGGAGCAGTGGCAGCAGCTGAGGTGGGGGAAAACGGAGGAGGGAAA
GCTGAAGGAGAGGAGGAAGGAGATGGGGGAGAGGAAGGTGGCGGGGTGCG
GGCAGCGCCGGCTCAGGCTTTGACGCAGAAGAAAGTGCAAGCCATGATAA
AGCAGCAGAAATTGAAGAAGGAAAGGGAAAAAAAGAAGGAGGAGAAAGAG
AGGGAAAAGAAGGAAAAGGAGGAAGAGAAGAAGATGGTAAAGGAAGAGGA
GAAGCTGAGGAAGAAGGAGGAGAAGGTGCAAGAGAAAAAGGAAAGGAAAG
CTCACAAGGTGAATGCGAAGGATGTCAAGAAGAAGGAGGGCACGGACGCC
AGCAAGGACGGAGGAAGAAGGGGGGAAGAAGAAGAAGATGGCTCGGTTTC
GTCTTTATCAGTGATGGTAGGGAAGAAGTGCGGGCGTCCACCTGGCAGCG
GGACGAAGGCCGCAGCTGCAGCAGCAGCAGCATCATCACCAGCAGCAACT
GCGGCAGTGAAGGACGGTGAAAAAGACCGAGGAGGAGAGGGAAAAGATGA
AGAGACGAAGATGGAGGAGGAGGAAGGAGAGGAGGAGAGCATGGAAATAG
AGGATGAGTCGGAGCAGAAGCAGGAAGAGGAGCAACGTCAAATGGACGCG
CGAGGGAAGCAGCAGCAGCAGCAGCACCAGCAGGCGCAATTAGAAAAGGA
GGAGGAAAATAAGAAAGAGACAGAGGAGAAGCCGAAGAAGAAGCTGACCA
TCAACCTTAGTGCACCTTTCGCTACGGTGCGAGCACCAGTAGCAGCACCC
GAAAAAAGAAAGGGACATTGGAGGGAGGGAGGGGAAGGGGGAGAGGAAGG
GGAAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGCGATGGTGCCCAAAA
GACGTGGTCGTCCGCCTGGCAGTGGCAAAAAAGCGACAGCAGTCCGAGAA
GGGGGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCCAGCAGCCG
GAACAGCAGCAGCAGCAGCAGCACGTCCCAGGAAACGAGGGCGGCCTCCA
GGGAGTGGGAAGAAGAAGGACGAGGTGGGCAAAATAGGAGTGAAAAATGA
GGCGGAGGCAGTTACAGCAGCAGTAGCGGAGGAGGAGGCAGAAGCAGCGG
TGCTTGCATTGCAGGCTTTGGGGGGGGTTAAGGAGGGGGAGGGAACGGGG
CAAGAAATGGATGGGGAAGTGGTGAAAAAGCAACGGAATGGCAGCAAGTG
A
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Coding sequence (CDS) from alignment at scaffold_20:423101..424401+

>mRNA_7630 ID=mRNA_7630|Name=jgi.p|Nanoce1779_2|632389|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at scaffold_20:423101..424401+ (Nannochloropsis oceanica)
ATGGTGCCTCCTGCACCAGCGATAGTGGGAGCAGTGGCAGCAGCTGAGGT
GGGGGAAAACGGAGGAGGGAAAGCTGAAGGAGAGGAGGAAGGAGATGGGG
GAGAGGAAGGTGGCGGGGTGCGGGCAGCGCCGGCTCAGGCTTTGACGCAG
AAGAAAGTGCAAGCCATGATAAAGCAGCAGAAATTGAAGAAGGAAAGGGA
AAAAAAGAAGGAGGAGAAAGAGAGGGAAAAGAAGGAAAAGGAGGAAGAGA
AGAAGATGGTAAAGGAAGAGGAGAAGCTGAGGAAGAAGGAGGAGAAGGTG
CAAGAGAAAAAGGAAAGGAAAGCTCACAAGGTGAATGCGAAGGATGTCAA
GAAGAAGGAGGGCACGGACGCCAGCAAGGACGGAGGAAGAAGGGGGGAAG
AAGAAGAAGATGGCTCGGTTTCGTCTTTATCAGTGATGGTAGGGAAGAAG
TGCGGGCGTCCACCTGGCAGCGGGACGAAGGCCGCAGCTGCAGCAGCAGC
AGCATCATCACCAGCAGCAACTGCGGCAGTGAAGGACGGTGAAAAAGACC
GAGGAGGAGAGGGAAAAGATGAAGAGACGAAGATGGAGGAGGAGGAAGGA
GAGGAGGAGAGCATGGAAATAGAGGATGAGTCGGAGCAGAAGCAGGAAGA
GGAGCAACGTCAAATGGACGCGCGAGGGAAGCAGCAGCAGCAGCAGCACC
AGCAGGCGCAATTAGAAAAGGAGGAGGAAAATAAGAAAGAGACAGAGGAG
AAGCCGAAGAAGAAGCTGACCATCAACCTTAGTGCACCTTTCGCTACGGC
TTTGGGGGGGGTTAAGGAGGGGGAGGGAACGGGGCAAGAAATGGATGGGG
AAGTGGTGAAAAAGCAACGGAATGGCAGCAAGTGAATGGTGCCTCCTGCA
CCAGCGATAGTGGGAGCAGTGGCAGCAGCTGAGGTGGGGGAAAACGGAGG
AGGGAAAGCTGAAGGAGAGGAGGAAGGAGATGGGGGAGAGGAAGGTGGCG
GGGTGCGGGCAGCGCCGGCTCAGGCTTTGACGCAGAAGAAAGTGCAAGCC
ATGATAAAGCAGCAGAAATTGAAGAAGGAAAGGGAAAAAAAGAAGGAGGA
GAAAGAGAGGGAAAAGAAGGAAAAGGAGGAAGAGAAGAAGATGGTAAAGG
AAGAGGAGAAGCTGAGGAAGAAGGAGGAGAAGGTGCAAGAGAAAAAGGAA
AGGAAAGCTCACAAGGTGAATGCGAAGGATGTCAAGAAGAAGGAGGGCAC
GGACGCCAGCAAGGACGGAGGAAGAAGGGGGGAAGAAGAAGAAGATGGCT
CGGTTTCGTCTTTATCAGTGATGGTAGGGAAGAAGTGCGGGCGTCCACCT
GGCAGCGGGACGAAGGCCGCAGCTGCAGCAGCAGCAGCATCATCACCAGC
AGCAACTGCGGCAGTGAAGGACGGTGAAAAAGACCGAGGAGGAGAGGGAA
AAGATGAAGAGACGAAGATGGAGGAGGAGGAAGGAGAGGAGGAGAGCATG
GAAATAGAGGATGAGTCGGAGCAGAAGCAGGAAGAGGAGCAACGTCAAAT
GGACGCGCGAGGGAAGCAGCAGCAGCAGCAGCACCAGCAGGCGCAATTAG
AAAAGGAGGAGGAAAATAAGAAAGAGACAGAGGAGAAGCCGAAGAAGAAG
CTGACCATCAACCTTAGTGCACCTTTCGCTACGGCTTTGGGGGGGGTTAA
GGAGGGGGAGGGAACGGGGCAAGAAATGGATGGGGAAGTGGTGAAAAAGC
AACGGAATGGCAGCAAGTGA
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Synonyms
Publications