jgi.p|Nanoce1779_2|599411, mRNA_7629 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599411
Unique NamemRNA_7629
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length568
Alignment locationscaffold_20:421503..422070 +

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Properties
Property NameValue
TranscriptId599497
TrackFilteredModels2
ProteinId599411
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:421503..422070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599411gene_7629Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599411mRNA_7629-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7629CDS_7629Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7629 ID=mRNA_7629|Name=jgi.p|Nanoce1779_2|599411|organism=Nannochloropsis oceanica|type=mRNA|length=568bp
GCTGCTGCTCCAACGTGTCTTGTCGTCTCTCCAATACCTTACTTCTCGCG
GTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGATGATGATGAT
CCCGCTGTGCAGCAGGCGTGTCCTTACGCCGACACTTAACAAGCCGACGC
CGCCTAGAGCGCACACCAGCACACCTAGACCCCACAGTTTGCCTCCCTTC
TGTCTTGTCTCAGCTTCCCTTCGTTCTCCTTTTGTCTGTTTCCTGTTGCT
ACTGTTGCTGGTACGACCTATCTTATCGCTGCTGGTGCTTATCCCCTCTT
CGACGGCAAAAAATGTGTCGGAGGGTGTGTGTGTCCGGGCTCGGGAAAAT
ACACCTCCAACGCTGCTGTTGCTGTTGCTGTTGCCACTCCCGACTAAGGA
AGAGCCTCTCTTGCGGTGCGAGATGTGCGGAGGTGTACTGCTGGGCGTCG
TCGTCGGCGGCGGCCTGTGAGGGTGATAGGACGGCTGCTGCTGCTGCTGC
TGCCCGCTGCCACTCGCACTTCCTACGACCGTCACGTCTGTAAGAAGAGT
AGGAAGGAATGACAACGT
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protein sequence of jgi.p|Nanoce1779_2|599411

>mRNA_7629-protein ID=mRNA_7629-protein|Name=jgi.p|Nanoce1779_2|599411|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MMMIPLCSRRVLTPTLNKPTPPRAHTSTPRPHSLPPFCLVSASLRSPFVC
FLLLLLLVRPILSLLVLIPSSTAKNVSEGVCVRARENTPPTLLLLLLLPL
PTKEEPLLRCEMCGGVLLGVVVGGGL*
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mRNA from alignment at scaffold_20:421503..422070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7629 ID=mRNA_7629|Name=jgi.p|Nanoce1779_2|599411|organism=Nannochloropsis oceanica|type=mRNA|length=568bp|location=Sequence derived from alignment at scaffold_20:421503..422070+ (Nannochloropsis oceanica)
GCTGCTGCTCCAACGTGTCTTGTCGTCTCTCCAATACCTTACTTCTCGCG
GTGGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGATGATGATGAT
CCCGCTGTGCAGCAGGCGTGTCCTTACGCCGACACTTAACAAGCCGACGC
CGCCTAGAGCGCACACCAGCACACCTAGACCCCACAGTTTGCCTCCCTTC
TGTCTTGTCTCAGCTTCCCTTCGTTCTCCTTTTGTCTGTTTCCTGTTGCT
ACTGTTGCTGGTACGACCTATCTTATCGCTGCTGGTGCTTATCCCCTCTT
CGACGGCAAAAAATGTGTCGGAGGGTGTGTGTGTCCGGGCTCGGGAAAAT
ACACCTCCAACGCTGCTGTTGCTGTTGCTGTTGCCACTCCCGACTAAGGA
AGAGCCTCTCTTGCGGTGCGAGATGTGCGGAGGTGTACTGCTGGGCGTCG
TCGTCGGCGGCGGCCTGTGAGGGTGATAGGACGGCTGCTGCTGCTGCTGC
TGCCCGCTGCCACTCGCACTTCCTACGACCGTCACGTCTGTAAGAAGAGT
AGGAAGGAATGACAACGT
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Coding sequence (CDS) from alignment at scaffold_20:421503..422070+

>mRNA_7629 ID=mRNA_7629|Name=jgi.p|Nanoce1779_2|599411|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_20:421503..422070+ (Nannochloropsis oceanica)
ATGATGATGATCCCGCTGTGCAGCAGGCGTGTCCTTACGCCGACACTTAA
CAAGCCGACGCCGCCTAGAGCGCACACCAGCACACCTAGACCCCACAGTT
TGCCTCCCTTCTGTCTTGTCTCAGCTTCCCTTCGTTCTCCTTTTGTCTGT
TTCCTGTTGCTACTGTTGCTGGTACGACCTATCTTATCGCTGCTGGTGCT
TATCCCCTCTTCGACGGCAAAAAATGTGTCGGAGGGTGTGTGTGTCCGGG
CTCGGGAAAATACACCTCCAACGCTGCTGTTGCTGTTGCTGTTGCCACTC
CCGACTAAGGAAGAGCCTCTCTTGCGGTGCGAGATGTGCGGAGGTGTACT
GCTGGGCGTCGTCGTCGGCGGCGGCCTGTGA
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Synonyms
Publications