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Properties
| Property Name | Value |
|---|
| TranscriptId | 672969 |
| Track | FilteredModels2 |
| ProteinId | 672883 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:419565..422662 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7628 ID=mRNA_7628|Name=jgi.p|Nanoce1779_2|672883|organism=Nannochloropsis oceanica|type=mRNA|length=2609bp
CAATAGGGACTTCCTGACCGGCGGGCCACGGGGATGAGCTACCGCTATTG
CTACTGGCCATGGCTATCTAGTGTGGTTTGCATGTGCGGGGTGAGAACTG
GATGAGGACTTGATGGATGATGAGAGAGGAGGTCGTGGCTTGCGGCAACG
GAAGCAAGCGAGCTGCTCTTGCTGTCGATCCTTTTGTCCCATACAAAACC
TCCACACACATTCTACAGCTTCACCGACAAGTTCCTTGTTCCACCGAGCT
GCATAAAGCTAGTCAGAAGGACAGAAAGGAGGTGTAACAACCTTGGAACC
ATTGCGCTCTCCAAGGACTGCGGCAACACCCATAGTGGCAACTACACAAC
AGACGGCGACAGCAGCAGCAGCCGCAGCAGTGCCACCGCCGCACCTCTTC
TTCACTCCCGTCGCACCCACGGGCACTCCCCTCCTCCCCCCACCCCTCCC
CGGACGTTGTCATTCCTTCCTACTCTTCTTACAGACGTGACGGTCGTAGG
AAGTGCGAGTGGCAGCGGGCAGCAGCAGCAGCAGCAGCCGTCCTATCACC
CTCACAGGCCGCCGCCGACGACGACGCCCAGCAGTACACCTCCGCACATC
TCGCACCGCAAGAGAGGCTCTTCCTTAGTCGGGAGTGGCAACAGCAACAG
CAACAGCAGCGTTGGAGGTGTATTTTCCCGAGCCCGGACACACACACCCT
CCGACACATTTTTTGCCGTCGAAGAGGGGATAAGCACCAGCAGCGATAAG
ATAGGTCGTACCAGCAACAGTAGCAACAGGAAACAGACAAAAGGAGAACG
AAGGGAAGCTGAGACAAGACAGAAGGGAGGCAAACTGTGGGGTCTAGGTG
TGCTGGTGTGCGCTCTAGGCGGCGTCGGCTTGTTAAGTGTCGGCGTAAGG
ACACGCCTGCTGCACAGCGGGATCATCATCATCAGCAGCAGCAGCAGCAG
CACCACCACCACCACCACCACCGCGAGAAGTAAGGTATTGGAGAGACGAC
AAGACACGTTGGAGCAGCAGCTAGGCGACGCAGCCGCGAGGAGTGGAGAG
AGGGAGGGCGAGGTGGACGACGGGGGGATAATGAACGGTAAAGTACTTGT
AACGCCGGTGCCACCGGCATGGAGCGAAGACAGCAGCAGCAGCATTGGCG
TGCGTTTGGAAGACAGTCATGGGCCGGACCCCACCCACGGCGTGAAGGAG
GTCTGGGGGAAGGACGAGGATGGGAAGGAGGACGGGGGGTACGACTACAC
CAAGACGACAACAGAGGTGTACGGCGTGAGGCAGATGGAGTTCTTCGGCC
CATACGCAGGGACCAGGCAGGGGCTGGACTACGGGTTCCATCGAAACTAC
CGGCGGCAGAGGCAGGAGGTTCAAGACGGGATTATTAGGAGGGCCCTGGA
GGGCGGGGCAGAGAGGAGGAGGAGGGAGTGGGGGAGGGAGGGGTCGTCGT
TGGAGGACTTGTCAACCGGCGATGACGGGCAGCAGCAGCTGCAGCAGCAG
CAGCAGAAGAAGGACGACGACGAAAATTTCTCCTCCCTCGCCCACGTCCA
ACGTGCCGAGCCCCACGAGATCGGCCCGGACTGCCGCCTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCTTCTCCTCCCTCTCCTCCTCCTCCTCCTCCCAC
CACTCCACCCCCCAGCAGTGGGTGGTGTTCACGGCTGGGCCCATGGGGGC
GGGAAAAAGCCACACCCTCAAGTGGCTGGCCAAGAGGGGTTTCTTCCCGT
TGGATGACTTTGTGCTCGCCGACCCGGATGTAATTCGAAACGAGCTCCCG
GAGATAGAGGGCTATATAGAGAGGAATCCATTAATGGCGGGTCAGCTGAC
GCATAAGGAGGCGGGTTATGTGCTGGAGATTTTGATTAGGGAGGGGCTGA
AGGAAGGGAGGAATGTGCTGGTACAGGGGAGCCTCAGAGACGCCGCATGG
CATGCGCAGTATTTTCAGGAGTTGAGAGAGTGTTTCCCAGGCCTGAGGAT
CGCGATAATCCACGTGACGGCGAGCAGGGAGACGGTCCTATCAAGGGCAC
GGCGCCGAGGGATAGCAACCCGGCGGGTGGTGCCGGATGAGGTCCTTCTA
GCTTCCCTGGAGGAGACTCCGCGCGCTGTAGGTGTACTGGAGAGACAGGC
AGACTACTGTGTGGCCATCGATAACGATGGGAGGGGGGAACCGCGCCTTG
TGGGAGGATGTGGAAGGGAGGGAGGGAGGGGGGGAAGGAGGGAGGAGGAG
ACGTGGACGACGTTTTCGGGTGTGTGGCGGGGATGTGGGTTGCCGTCGAG
GAGGGAGGGGGGAGGGGAGGGAGGGAGGGAGGGGACGGAGGAGGGGAAAG
AGTAGATGGTTGTGTTTTAGTTTTGTATCGGTGAGTGGAAGAACACGGGG
AGCGTGCATAAGGACACAAAGGTGGAACGTTCAAAAATTAGGGTTGTTTT
CGTCGTCGTCGCCGTCGTAGTTGTTGTTGCTTTTTCCTCGGATTCTTGAC
TATGTTCTTCTTGTTCTTGTTCTTATTAACTCTTCATTTTGTCTTATTAT
TTTATTTGCAGTTTTGGTTGCATTGCTTCTTGTTCTCTCCCTAGCGCTAA
CCCAATACC back to topprotein sequence of jgi.p|Nanoce1779_2|672883 >mRNA_7628-protein ID=mRNA_7628-protein|Name=jgi.p|Nanoce1779_2|672883|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MNGKVLVTPVPPAWSEDSSSSIGVRLEDSHGPDPTHGVKEVWGKDEDGKE
DGGYDYTKTTTEVYGVRQMEFFGPYAGTRQGLDYGFHRNYRRQRQEVQDG
IIRRALEGGAERRRREWGREGSSLEDLSTGDDGQQQLQQQQQKKDDDENF
SSLAHVQRAEPHEIGPDCRLSLPPSLPPSFSSLSSSSSSHHSTPQQWVVF
TAGPMGAGKSHTLKWLAKRGFFPLDDFVLADPDVIRNELPEIEGYIERNP
LMAGQLTHKEAGYVLEILIREGLKEGRNVLVQGSLRDAAWHAQYFQELRE
CFPGLRIAIIHVTASRETVLSRARRRGIATRRVVPDEVLLASLEETPRAV
GVLERQADYCVAIDNDGRGEPRLVGGCGREGGRGGRREEETWTTFSGVWR
GCGLPSRREGGGEGGREGTEEGKE* back to topmRNA from alignment at scaffold_20:419565..422662- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7628 ID=mRNA_7628|Name=jgi.p|Nanoce1779_2|672883|organism=Nannochloropsis oceanica|type=mRNA|length=3098bp|location=Sequence derived from alignment at scaffold_20:419565..422662- (Nannochloropsis oceanica)
CAATAGGGACTTCCTGACCGGCGGGCCACGGGGATGAGCTACCGCTATTG
CTACTGGCCATGGCTATCTAGTGTGGTTTGCATGTGCGGGGTGAGAACTG
GATGAGGACTTGATGGATGATGAGAGAGGAGGTCGTGGCTTGCGGCAACG
GAAGCAAGCGAGCTGCTCTTGCTGTCGATCCTTTTGTCCCATACAAAACC
TCCACACACATTCTACAGCTTCACCGACAAGTTCCTTGTTCCACCGAGCT
GCATAAAGCTAGTCGTAAGTCAGGTCACACCCGCGTCACAAAAAGACTCG
CGGTCGCAGACAACCAGAGCCCAAGTAGATCTACCTGCCCGACGGCGCAA
CTGGTCCTCTTTCTGACGCCTCTTTACGCACTCCCACCCACAACAACACA
TAGAGAAGGACAGAAAGGAGGTGTAACAACCTTGGAACCATTGCGCTCTC
CAAGGACTGCGGCAACACCCATAGTGGCAACTACACAACAGACGGCGACA
GCAGCAGCAGCCGCAGCAGTGCCACCGCCGCACCTCTTCTTCACTCCCGT
CGCACCCACGGGCACTCCCCTCCTCCCCCCACCCCTCCCCGGACGTTGTC
ATTCCTTCCTACTCTTCTTACAGACGTGACGGTCGTAGGAAGTGCGAGTG
GCAGCGGGCAGCAGCAGCAGCAGCAGCCGTCCTATCACCCTCACAGGCCG
CCGCCGACGACGACGCCCAGCAGTACACCTCCGCACATCTCGCACCGCAA
GAGAGGCTCTTCCTTAGTCGGGAGTGGCAACAGCAACAGCAACAGCAGCG
TTGGAGGTGTATTTTCCCGAGCCCGGACACACACACCCTCCGACACATTT
TTTGCCGTCGAAGAGGGGATAAGCACCAGCAGCGATAAGATAGGTCGTAC
CAGCAACAGTAGCAACAGGAAACAGACAAAAGGAGAACGAAGGGAAGCTG
AGACAAGACAGAAGGGAGGCAAACTGTGGGGTCTAGGTGTGCTGGTGTGC
GCTCTAGGCGGCGTCGGCTTGTTAAGTGTCGGCGTAAGGACACGCCTGCT
GCACAGCGGGATCATCATCATCAGCAGCAGCAGCAGCAGCACCACCACCA
CCACCACCACCGCGAGAAGTAAGGTATTGGAGAGACGACAAGACACGTTG
GAGCAGCAGCTAGGCGACGCAGCCGCGAGGAGTGGAGAGAGGGAGGGCGA
GGTGGACGACGGGGGGATAATGAACGGTAAAGTACTTGTAACGCCGGTGC
CACCGGCATGGAGCGAAGACAGCAGCAGCAGCATTGGCGTGCGTTTGGAA
GACAGTCATGGGCCGGACCCCACCCACGGCGTGAAGGAGGTCTGGGGGAA
GGACGAGGATGGGAAGGAGGACGGGGGGTACGACTACACCAAGACGACAA
CAGAGGTGTACGGCGTGAGGCAGATGGAGTTCTTCGGCCCATACGCAGGG
ACCAGGCAGGGGCTGGACTACGGGTTCCATCGAAACTACCGGCGGCAGAG
GCAGGAGGTTCAAGACGGGATTATTAGGAGGGCCCTGGAGGGCGGGGCAG
AGAGGAGGAGGAGGGAGTGGGGGAGGGAGGGGTCGTCGTTGGAGGACTTG
TCAACCGGCGATGACGGGCAGCAGCAGCTGCAGCAGCAGCAGCAGAAGAA
GGACGACGACGAAAATTTCTCCTCCCTCGCCCACGTCCAACGTGCCGAGC
CCCACGAGATCGGCCCGGACTGCCGCCTCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTCTCCTCCCTCTCCTCCTCCTCCTCCTCCCACCACTCCACCCC
CCAGCAGTGGGTGGTGTTCACGGCTGGGCCCATGGGGGCGGGAAAAAGCC
ACACCCTCAAGTGGCTGGCCAAGAGGGGTTTCTTCCCGTTGGATGACTTT
GTGCTCGCCGACCCGGATGTAATTCGAAACGAGCTCCCGGAGATAGAGGG
CTATATAGAGAGGAATCCATTAATGGCGGGTCAGCTGACGCATAAGGAGG
CGGGTTATGTGCTGGAGATTTTGATTAGGGAGGGGCTGAAGGAAGGGAGG
AATGTGCTGGTACAGGGGAGCCTCAGAGACGCCGCATGGCATGCGCAGTA
TTTTCAGGTAGGAGGGAGGGCAAGAGAGAGAGGGAGAGAGAGGGGGGTTG
GAGTAAGGGTCAAAGAAGAGGCAAGTAGGTGGGACGACGAGAGTGCTGAC
GATGATTTCCCCCTCTTCTCCCTTCCTCCCTCTTCCCCTTCCCAACCCAC
CCCCTCCCTCCCTCCCGCAACAGGAGTTGAGAGAGTGTTTCCCAGGCCTG
AGGATCGCGATAATCCACGTGACGGCGAGCAGGGAGACGGTCCTATCAAG
GTTAGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGAAGAACGAGGATGAAT
AAGAGTCAGGACTCGTATATAAATATATAGCAAGAGGAGGGGACGAGGCG
TCACGAGTCGTTTCTCTTCTAGAAGCTAACGGTTGGATTGGCCTTCCTTC
CCCCTCTTTCCCTCCCTCTCTCTCTCCCTCCCAGGGCACGGCGCCGAGGG
ATAGCAACCCGGCGGGTGGTGCCGGATGAGGTCCTTCTAGCTTCCCTGGA
GGAGACTCCGCGCGCTGTAGGTGTACTGGAGAGACAGGCAGACTACTGTG
TGGCCATCGATAACGATGGGAGGGGGGAACCGCGCCTTGTGGGAGGATGT
GGAAGGGAGGGAGGGAGGGGGGGAAGGAGGGAGGAGGAGACGTGGACGAC
GTTTTCGGGTGTGTGGCGGGGATGTGGGTTGCCGTCGAGGAGGGAGGGGG
GAGGGGAGGGAGGGAGGGAGGGGACGGAGGAGGGGAAAGAGTAGATGGTT
GTGTTTTAGTTTTGTATCGGTGAGTGGAAGAACACGGGGAGCGTGCATAA
GGACACAAAGGTGGAACGTTCAAAAATTAGGGTTGTTTTCGTCGTCGTCG
CCGTCGTAGTTGTTGTTGCTTTTTCCTCGGATTCTTGACTATGTTCTTCT
TGTTCTTGTTCTTATTAACTCTTCATTTTGTCTTATTATTTTATTTGCAG
TTTTGGTTGCATTGCTTCTTGTTCTCTCCCTAGCGCTAACCCAATACC back to topCoding sequence (CDS) from alignment at scaffold_20:419565..422662- >mRNA_7628 ID=mRNA_7628|Name=jgi.p|Nanoce1779_2|672883|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_20:419565..422662- (Nannochloropsis oceanica)
GGCACGGCGCCGAGGGATAGCAACCCGGCGGGTGGTGCCGGATGAGGTCC
TTCTAGCTTCCCTGGAGGAGACTCCGCGCGCTGTAGGTGTACTGGAGAGA
CAGGCAGACTACTGTGTGGCCATCGATAACGATGGGAGGGGGGAACCGCG
CCTTGTGGGAGGATGTGGAAGGGAGGGAGGGAGGGGGGGAAGGAGGGAGG
AGGAGACGTGGACGACGTTTTCGGGTGTGTGGCGGGGATGTGGGTTGCCG
TCGAGGAGGGAGGGGGGAGGGGAGGGAGGGAGGGAGGGGACGGAGGAGGG
GAAAGAGTAGGAGTTGAGAGAGTGTTTCCCAGGCCTGAGGATCGCGATAA
TCCACGTGACGGCGAGCAGGGAGACGGTCCTATCAAGATGAACGGTAAAG
TACTTGTAACGCCGGTGCCACCGGCATGGAGCGAAGACAGCAGCAGCAGC
ATTGGCGTGCGTTTGGAAGACAGTCATGGGCCGGACCCCACCCACGGCGT
GAAGGAGGTCTGGGGGAAGGACGAGGATGGGAAGGAGGACGGGGGGTACG
ACTACACCAAGACGACAACAGAGGTGTACGGCGTGAGGCAGATGGAGTTC
TTCGGCCCATACGCAGGGACCAGGCAGGGGCTGGACTACGGGTTCCATCG
AAACTACCGGCGGCAGAGGCAGGAGGTTCAAGACGGGATTATTAGGAGGG
CCCTGGAGGGCGGGGCAGAGAGGAGGAGGAGGGAGTGGGGGAGGGAGGGG
TCGTCGTTGGAGGACTTGTCAACCGGCGATGACGGGCAGCAGCAGCTGCA
GCAGCAGCAGCAGAAGAAGGACGACGACGAAAATTTCTCCTCCCTCGCCC
ACGTCCAACGTGCCGAGCCCCACGAGATCGGCCCGGACTGCCGCCTCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCTCCTCCCTCTCCTCCTCCTCCTC
CTCCCACCACTCCACCCCCCAGCAGTGGGTGGTGTTCACGGCTGGGCCCA
TGGGGGCGGGAAAAAGCCACACCCTCAAGTGGCTGGCCAAGAGGGGTTTC
TTCCCGTTGGATGACTTTGTGCTCGCCGACCCGGATGTAATTCGAAACGA
GCTCCCGGAGATAGAGGGCTATATAGAGAGGAATCCATTAATGGCGGGTC
AGCTGACGCATAAGGAGGCGGGTTATGTGCTGGAGATTTTGATTAGGGAG
GGGCTGAAGGAAGGGAGGAATGTGCTGGTACAGGGGAGCCTCAGAGACGC
CGCATGGCATGCGCAGTATTTTCAGGGCACGGCGCCGAGGGATAGCAACC
CGGCGGGTGGTGCCGGATGAGGTCCTTCTAGCTTCCCTGGAGGAGACTCC
GCGCGCTGTAGGTGTACTGGAGAGACAGGCAGACTACTGTGTGGCCATCG
ATAACGATGGGAGGGGGGAACCGCGCCTTGTGGGAGGATGTGGAAGGGAG
GGAGGGAGGGGGGGAAGGAGGGAGGAGGAGACGTGGACGACGTTTTCGGG
TGTGTGGCGGGGATGTGGGTTGCCGTCGAGGAGGGAGGGGGGAGGGGAGG
GAGGGAGGGAGGGGACGGAGGAGGGGAAAGAGTAGGAGTTGAGAGAGTGT
TTCCCAGGCCTGAGGATCGCGATAATCCACGTGACGGCGAGCAGGGAGAC
GGTCCTATCAAGATGAACGGTAAAGTACTTGTAACGCCGGTGCCACCGGC
ATGGAGCGAAGACAGCAGCAGCAGCATTGGCGTGCGTTTGGAAGACAGTC
ATGGGCCGGACCCCACCCACGGCGTGAAGGAGGTCTGGGGGAAGGACGAG
GATGGGAAGGAGGACGGGGGGTACGACTACACCAAGACGACAACAGAGGT
GTACGGCGTGAGGCAGATGGAGTTCTTCGGCCCATACGCAGGGACCAGGC
AGGGGCTGGACTACGGGTTCCATCGAAACTACCGGCGGCAGAGGCAGGAG
GTTCAAGACGGGATTATTAGGAGGGCCCTGGAGGGCGGGGCAGAGAGGAG
GAGGAGGGAGTGGGGGAGGGAGGGGTCGTCGTTGGAGGACTTGTCAACCG
GCGATGACGGGCAGCAGCAGCTGCAGCAGCAGCAGCAGAAGAAGGACGAC
GACGAAAATTTCTCCTCCCTCGCCCACGTCCAACGTGCCGAGCCCCACGA
GATCGGCCCGGACTGCCGCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCTCCTCCCTCTCCTCCTCCTCCTCCTCCCACCACTCCACCCCCCAGCAG
TGGGTGGTGTTCACGGCTGGGCCCATGGGGGCGGGAAAAAGCCACACCCT
CAAGTGGCTGGCCAAGAGGGGTTTCTTCCCGTTGGATGACTTTGTGCTCG
CCGACCCGGATGTAATTCGAAACGAGCTCCCGGAGATAGAGGGCTATATA
GAGAGGAATCCATTAATGGCGGGTCAGCTGACGCATAAGGAGGCGGGTTA
TGTGCTGGAGATTTTGATTAGGGAGGGGCTGAAGGAAGGGAGGAATGTGC
TGGTACAGGGGAGCCTCAGAGACGCCGCATGGCATGCGCAGTATTTTCAG
GGCACGGCGCCGAGGGATAGCAACCCGGCGGGTGGTGCCGGATGAGGTCC
TTCTAGCTTCCCTGGAGGAGACTCCGCGCGCTGTAGGTGTACTGGAGAGA
CAGGCAGACTACTGTGTGGCCATCGATAACGATGGGAGGGGGGAACCGCG
CCTTGTGGGAGGATGTGGAAGGGAGGGAGGGAGGGGGGGAAGGAGGGAGG
AGGAGACGTGGACGACGTTTTCGGGTGTGTGGCGGGGATGTGGGTTGCCG
TCGAGGAGGGAGGGGGGAGGGGAGGGAGGGAGGGAGGGGACGGAGGAGGG
GAAAGAGTAGGAGTTGAGAGAGTGTTTCCCAGGCCTGAGGATCGCGATAA
TCCACGTGACGGCGAGCAGGGAGACGGTCCTATCAAGATGAACGGTAAAG
TACTTGTAACGCCGGTGCCACCGGCATGGAGCGAAGACAGCAGCAGCAGC
ATTGGCGTGCGTTTGGAAGACAGTCATGGGCCGGACCCCACCCACGGCGT
GAAGGAGGTCTGGGGGAAGGACGAGGATGGGAAGGAGGACGGGGGGTACG
ACTACACCAAGACGACAACAGAGGTGTACGGCGTGAGGCAGATGGAGTTC
TTCGGCCCATACGCAGGGACCAGGCAGGGGCTGGACTACGGGTTCCATCG
AAACTACCGGCGGCAGAGGCAGGAGGTTCAAGACGGGATTATTAGGAGGG
CCCTGGAGGGCGGGGCAGAGAGGAGGAGGAGGGAGTGGGGGAGGGAGGGG
TCGTCGTTGGAGGACTTGTCAACCGGCGATGACGGGCAGCAGCAGCTGCA
GCAGCAGCAGCAGAAGAAGGACGACGACGAAAATTTCTCCTCCCTCGCCC
ACGTCCAACGTGCCGAGCCCCACGAGATCGGCCCGGACTGCCGCCTCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCTCCTCCCTCTCCTCCTCCTCCTC
CTCCCACCACTCCACCCCCCAGCAGTGGGTGGTGTTCACGGCTGGGCCCA
TGGGGGCGGGAAAAAGCCACACCCTCAAGTGGCTGGCCAAGAGGGGTTTC
TTCCCGTTGGATGACTTTGTGCTCGCCGACCCGGATGTAATTCGAAACGA
GCTCCCGGAGATAGAGGGCTATATAGAGAGGAATCCATTAATGGCGGGTC
AGCTGACGCATAAGGAGGCGGGTTATGTGCTGGAGATTTTGATTAGGGAG
GGGCTGAAGGAAGGGAGGAATGTGCTGGTACAGGGGAGCCTCAGAGACGC
CGCATGGCATGCGCAGTATTTTCAG back to top
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