jgi.p|Nanoce1779_2|632387, mRNA_7627 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632387
Unique NamemRNA_7627
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length425
Alignment locationscaffold_20:418920..419344 +

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Properties
Property NameValue
TranscriptId632473
TrackFilteredModels2
ProteinId632387
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:418920..419344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632387gene_7627Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632387mRNA_7627-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7627CDS_7627Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7627 ID=mRNA_7627|Name=jgi.p|Nanoce1779_2|632387|organism=Nannochloropsis oceanica|type=mRNA|length=425bp
CACGGGAGAGACAGGAGTGTGAGATGAAGGAGTTGAGGGTGATGGTGGAG
GCTTTGTCCGCCTACAAATTGATTGTGGAGGAAGCCCCGGATATGATGTG
TGTCCTCTCGGCTGAGAGGGAGGAAAAAATCTTGTACGCCAACTCAGCCT
TTGCGCGCTTGCTGGGGCTAGTGCCTGCGAGCTTGCTAGGGAGGAGATTG
GGAGAGATGGTCCACGCAGAGGATTTGAAGGAGGTGCTCGCGGCGTTCAC
CACTACCCTGTTAAGCACAGATACGGTGGCCAAGACCACCTGCCGATTAA
AGTCTTGCTCCGTGGAGGGGGAAAGAGACAGAGGAGGAACGATGGAGGAG
AAATACGTCAAAGTAGGCCTGGGGCTTCGGAAGGGAACGCAGGGGTTGCT
GGCCATCATTCGTCCGGAAGGCTGA
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protein sequence of jgi.p|Nanoce1779_2|632387

>mRNA_7627-protein ID=mRNA_7627-protein|Name=jgi.p|Nanoce1779_2|632387|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MKELRVMVEALSAYKLIVEEAPDMMCVLSAEREEKILYANSAFARLLGLV
PASLLGRRLGEMVHAEDLKEVLAAFTTTLLSTDTVAKTTCRLKSCSVEGE
RDRGGTMEEKYVKVGLGLRKGTQGLLAIIRPEG*
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mRNA from alignment at scaffold_20:418920..419344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7627 ID=mRNA_7627|Name=jgi.p|Nanoce1779_2|632387|organism=Nannochloropsis oceanica|type=mRNA|length=425bp|location=Sequence derived from alignment at scaffold_20:418920..419344+ (Nannochloropsis oceanica)
CACGGGAGAGACAGGAGTGTGAGATGAAGGAGTTGAGGGTGATGGTGGAG
GCTTTGTCCGCCTACAAATTGATTGTGGAGGAAGCCCCGGATATGATGTG
TGTCCTCTCGGCTGAGAGGGAGGAAAAAATCTTGTACGCCAACTCAGCCT
TTGCGCGCTTGCTGGGGCTAGTGCCTGCGAGCTTGCTAGGGAGGAGATTG
GGAGAGATGGTCCACGCAGAGGATTTGAAGGAGGTGCTCGCGGCGTTCAC
CACTACCCTGTTAAGCACAGATACGGTGGCCAAGACCACCTGCCGATTAA
AGTCTTGCTCCGTGGAGGGGGAAAGAGACAGAGGAGGAACGATGGAGGAG
AAATACGTCAAAGTAGGCCTGGGGCTTCGGAAGGGAACGCAGGGGTTGCT
GGCCATCATTCGTCCGGAAGGCTGA
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Coding sequence (CDS) from alignment at scaffold_20:418920..419344+

>mRNA_7627 ID=mRNA_7627|Name=jgi.p|Nanoce1779_2|632387|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_20:418920..419344+ (Nannochloropsis oceanica)
ATGAAGGAGTTGAGGGTGATGGTGGAGGCTTTGTCCGCCTACAAATTGAT
TGTGGAGGAAGCCCCGGATATGATGTGTGTCCTCTCGGCTGAGAGGGAGG
AAAAAATCTTGTACGCCAACTCAGCCTTTGCGCGCTTGCTGGGGCTAGTG
CCTGCGAGCTTGCTAGGGAGGAGATTGGGAGAGATGGTCCACGCAGAGGA
TTTGAAGGAGGTGCTCGCGGCGTTCACCACTACCCTGTTAAGCACAGATA
CGGTGGCCAAGACCACCTGCCGATTAAAGTCTTGCTCCGTGGAGGGGGAA
AGAGACAGAGGAGGAACGATGGAGGAGAAATACGTCAAAGTAGGCCTGGG
GCTTCGGAAGGGAACGCAGGGGTTGCTGGCCATCATTCGTCCGGAAGGCT
GA
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Synonyms
Publications