jgi.p|Nanoce1779_2|672881, mRNA_7626 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672881
Unique NamemRNA_7626
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length507
Alignment locationscaffold_20:417793..418644 -

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Properties
Property NameValue
TranscriptId672967
TrackFilteredModels2
ProteinId672881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:417793..418644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672881gene_7626Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672881mRNA_7626-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7626CDS_7626Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7626 ID=mRNA_7626|Name=jgi.p|Nanoce1779_2|672881|organism=Nannochloropsis oceanica|type=mRNA|length=507bp
CCAGAGTTGGAGCAAGGAGGGGAGGAAGGGATGGAGCGCGGGGGTGGCTG
CGGGTTGGACACCTGATGGGGGTGAAGGCCGCCGACAGGGATAAGGAGGG
AGGAAGAGGAGGGACGAACGTGGTGCTGTGCCTTCATGTTAGTGTCGCTG
TGTGGGTGGGGGATCGACGAGGCCAAGGTGCTGACTTTGAGGGAAGAGAT
GAAGGAGGCAGAGCGGGGGGAGATGGAAGCGGTGGAGCAGGAGGAGGGGG
AGAAGGAGGAGGAGGACGACGAGGAGGGGATGCAGGAAGTGATGGACGAG
CGGACAGGGAAAGCCTGCAGTCCGGCAGCAGCTTGTGTTGTGTTGGCGAA
GGAAGAAGCGTTGCTGGGGATTCCACATGCCGCTGCCGGGGCCGAAGCAA
GGTGCCGATGGGGGCGGAGGCTGCGGTCCAATTCGGTGGTTGCCAAAGAC
GAAGCGGGGTGCACGGGTTCCAACGGTACCGATAAACCTGGGGATGAGCG
CATTTGA
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protein sequence of jgi.p|Nanoce1779_2|672881

>mRNA_7626-protein ID=mRNA_7626-protein|Name=jgi.p|Nanoce1779_2|672881|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MGVKAADRDKEGGRGGTNVVLCLHVSVAVWVGDRRGQGADFEGRDEGGRA
GGDGSGGAGGGGEGGGGRRGGDAGSDGRADRESLQSGSSLCCVGEGRSVA
GDSTCRCRGRSKVPMGAEAAVQFGGCQRRSGVHGFQRYR*
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mRNA from alignment at scaffold_20:417793..418644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7626 ID=mRNA_7626|Name=jgi.p|Nanoce1779_2|672881|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at scaffold_20:417793..418644- (Nannochloropsis oceanica)
CCAGAGTTGGAGCAAGGAGGGGAGGAAGGGATGGAGCGCGGGGGTGGCTG
CGGGTTGGACACCTGATGGGGGTGAAGGCCGCCGACAGGGATAAGGAGGG
AGGAAGAGGAGGGACGAACGTGGTGCTGTGCCTTCATGTTAGTGTCGCTG
TGTGGGTGGGGGATCGACGAGGCCAAGGTGCTGACTTTGAGGGAAGAGAT
GAAGGAGGCAGAGCGGGGGGAGATGGAAGCGGTGGAGCAGGAGGAGGGGG
AGAAGGAGGAGGAGGACGACGAGGAGGGGATGCAGGAAGTGATGGACGAG
CGGACAGGGAAAGCCTGCAGTCCGGCAGCAGCTTGTGTTGTGTTGGCGAA
GGAAGAAGCGGTAGAAACGGAGGGAGGATAGACGGAGCAGTGGGCGAAGG
CGGCAGGGGGGGGGACGGCGTGGTGGGAAAGGGGTAGCTGTTGTGTTTGT
TGTTGAGTTTGTTGTTTTTGCTGGTGCTGCTGGTGCTGATGCTGGTGCAA
GTCTGACCTCGAGATGTGTTGCTTGAGGGGAAAAGGCTGCTGCCAGGGCT
GTGAGTGAGGCCCGTCTTTGGAATCAGTGGGTTCTTGGGCTTGTTGGGCA
TTGACAGGGGTTGCCAGTCGCCCTGGATGCTGCGCGGACGAAATGGTAGT
CCGCAGTGCTGTTGCGTTGCATTCACTGGCGTCTAATCCTTCACGATCCC
CGGAGTTGCTGGGGATTCCACATGCCGCTGCCGGGGCCGAAGCAAGGTGC
CGATGGGGGCGGAGGCTGCGGTCCAATTCGGTGGTTGCCAAAGACGAAGC
GGGGTGCACGGGTTCCAACGGTACCGATAAACCTGGGGATGAGCGCATTT
GA
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Coding sequence (CDS) from alignment at scaffold_20:417793..418644-

>mRNA_7626 ID=mRNA_7626|Name=jgi.p|Nanoce1779_2|672881|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_20:417793..418644- (Nannochloropsis oceanica)
TTGCTGGGGATTCCACATGCCGCTGCCGGGGCCGAAGCAAGGTGCCGATG
GGGGCGGAGGCTGCGGTCCAATTCGGTGGTTGCCAAAGACGAAGCGGGGT
GCACGGGTTCCAACGGTACCGATAAATGGGGGTGAAGGCCGCCGACAGGG
ATAAGGAGGGAGGAAGAGGAGGGACGAACGTGGTGCTGTGCCTTCATGTT
AGTGTCGCTGTGTGGGTGGGGGATCGACGAGGCCAAGGTGCTGACTTTGA
GGGAAGAGATGAAGGAGGCAGAGCGGGGGGAGATGGAAGCGGTGGAGCAG
GAGGAGGGGGAGAAGGAGGAGGAGGACGACGAGGAGGGGATGCAGGAAGT
GATGGACGAGCGGACAGGGAAAGCCTGCAGTCCGGCAGCAGCTTGTGTTG
TGTTGGCGAAGGAAGAAGCGTTGCTGGGGATTCCACATGCCGCTGCCGGG
GCCGAAGCAAGGTGCCGATGGGGGCGGAGGCTGCGGTCCAATTCGGTGGT
TGCCAAAGACGAAGCGGGGTGCACGGGTTCCAACGGTACCGATAAATGGG
GGTGAAGGCCGCCGACAGGGATAAGGAGGGAGGAAGAGGAGGGACGAACG
TGGTGCTGTGCCTTCATGTTAGTGTCGCTGTGTGGGTGGGGGATCGACGA
GGCCAAGGTGCTGACTTTGAGGGAAGAGATGAAGGAGGCAGAGCGGGGGG
AGATGGAAGCGGTGGAGCAGGAGGAGGGGGAGAAGGAGGAGGAGGACGAC
GAGGAGGGGATGCAGGAAGTGATGGACGAGCGGACAGGGAAAGCCTGCAG
TCCGGCAGCAGCTTGTGTTGTGTTGGCGAAGGAAGAAGCG
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Synonyms
Publications