jgi.p|Nanoce1779_2|599398, mRNA_7624 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599398
Unique NamemRNA_7624
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length500
Alignment locationscaffold_20:409224..409723 +

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Properties
Property NameValue
TranscriptId599484
TrackFilteredModels2
ProteinId599398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:409224..409723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599398gene_7624Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599398mRNA_7624-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7624CDS_7624Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7624 ID=mRNA_7624|Name=jgi.p|Nanoce1779_2|599398|organism=Nannochloropsis oceanica|type=mRNA|length=500bp
GTCGAGAGCTATGACGCAAATGCTTTAAGATAACTTTAACACCTGTCTTG
CCCTTGCCCGCCTTCATAGCATCCTTGCGTGGAGGTGAGAAGGAGTGAGC
ACATGCGGTGGCCGCTGGCAATCTTTTTGTTTCTTGTTCATTTTCTCCCC
TTGGTTTGCCTGTGGTGTGCCGCTGCCACTGCTTCTTTTCTTCTTCTTCG
TCTTCCTTTATTTTCTAATTCTTATCTTTCTATCCTCATTCGTATTCTTT
ATCCTCTCCTCCGCATTCTTCTTGTCTCTATCCTCTTGCCGCCATTCCAT
TCTTCCTTCTCCATGGCCTCCTGTCGTCGCTACCCCCCACAACCACGTCG
GCGTGCGAGCCAAATGAGCTAGGTGAGGTGGAGGGCAATCACCAAAACCA
TCATAGACATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCTCTATCCTCGTCTTCCACCCTCATTCCCGCCTTGCACTCCCTCTC
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protein sequence of jgi.p|Nanoce1779_2|599398

>mRNA_7624-protein ID=mRNA_7624-protein|Name=jgi.p|Nanoce1779_2|599398|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MRWPLAIFLFLVHFLPLVCLWCAAATASFLLLRLPLFSNSYLSILIRILY
PLLRILLVSILLPPFHSSFSMASCRRYPPQPRRRASQMS*
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mRNA from alignment at scaffold_20:409224..409723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7624 ID=mRNA_7624|Name=jgi.p|Nanoce1779_2|599398|organism=Nannochloropsis oceanica|type=mRNA|length=500bp|location=Sequence derived from alignment at scaffold_20:409224..409723+ (Nannochloropsis oceanica)
GTCGAGAGCTATGACGCAAATGCTTTAAGATAACTTTAACACCTGTCTTG
CCCTTGCCCGCCTTCATAGCATCCTTGCGTGGAGGTGAGAAGGAGTGAGC
ACATGCGGTGGCCGCTGGCAATCTTTTTGTTTCTTGTTCATTTTCTCCCC
TTGGTTTGCCTGTGGTGTGCCGCTGCCACTGCTTCTTTTCTTCTTCTTCG
TCTTCCTTTATTTTCTAATTCTTATCTTTCTATCCTCATTCGTATTCTTT
ATCCTCTCCTCCGCATTCTTCTTGTCTCTATCCTCTTGCCGCCATTCCAT
TCTTCCTTCTCCATGGCCTCCTGTCGTCGCTACCCCCCACAACCACGTCG
GCGTGCGAGCCAAATGAGCTAGGTGAGGTGGAGGGCAATCACCAAAACCA
TCATAGACATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCTCTATCCTCGTCTTCCACCCTCATTCCCGCCTTGCACTCCCTCTC
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Coding sequence (CDS) from alignment at scaffold_20:409224..409723+

>mRNA_7624 ID=mRNA_7624|Name=jgi.p|Nanoce1779_2|599398|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_20:409224..409723+ (Nannochloropsis oceanica)
ATGCGGTGGCCGCTGGCAATCTTTTTGTTTCTTGTTCATTTTCTCCCCTT
GGTTTGCCTGTGGTGTGCCGCTGCCACTGCTTCTTTTCTTCTTCTTCGTC
TTCCTTTATTTTCTAATTCTTATCTTTCTATCCTCATTCGTATTCTTTAT
CCTCTCCTCCGCATTCTTCTTGTCTCTATCCTCTTGCCGCCATTCCATTC
TTCCTTCTCCATGGCCTCCTGTCGTCGCTACCCCCCACAACCACGTCGGC
GTGCGAGCCAAATGAGCTAG
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Synonyms
Publications