jgi.p|Nanoce1779_2|599389, mRNA_7623 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599389
Unique NamemRNA_7623
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1329
Alignment locationscaffold_20:401875..403203 -

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Properties
Property NameValue
TranscriptId599475
TrackFilteredModels2
ProteinId599389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:401875..403203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599389gene_7623Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599389mRNA_7623-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7623CDS_7623Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7623 ID=mRNA_7623|Name=jgi.p|Nanoce1779_2|599389|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp
CAGGATCATAAGCAACAATCGTGCTTACGTGGTGTGGGTTGTCCTGAAAT
TTTCCGCGGAGGTCTTCCATGGCGGCTCCTCCTCCCTCCCCTCCCTTTGC
TCCTCCCCCCGACCCCACCATCGCATCCCCCCCAAAGGCATCTTGGACCA
ATCAATACATCTCACCGCATGACGCTCAGACTCTCTTTGTAGAAAGCCTT
GTTATCCTCTTCCTCTCCATCCTGGCCACGCTGTCCGTGCTGCTGGCGAT
CCTCCACAGGCACGTGTGCTTGTTGTTCTGGCGGCCATTTCTCCTCCTCC
TGAAAGCTTCCTCTTCTTACCTTCCCCGACCCAGACACTATTTTCCCGAT
AAAGCCTCATTTTTGCTTCATCTTCTTTTCTTTTCTTCTGATCTCCCCTC
ACTCCCCATAGGAAGTACAACCGGCGTGACCAGAGGCACCAGGCAGAACG
ACGTCGACGGCACCGCGAAATCCGCAAATTTCTTGACTTCATCGTCCTGG
TCTTGTTTGGGTTTGAGCTATGGCTGTCTCTCAATTGGATGGCTGGCACC
ATTCTCTCGGAGCAGTTGCATGGCCGGAGCTCGTTTGGAGTGGAAGCCAG
GGAGGAGATGACGAGGCGAGGGTGGGAGGGAAGGAGGAAGGCCTGTCGGG
TCGTGGGGGGATTGATCTACGCCATTGAGATCGTTCTTTACTTGTGGAAT
GCGTGCCTGGCCTACAGCATCTATTCATGGATCGTCAAAAAAGCCCTCCT
CCGACGCCTGTACGACCGCATGCAGTTCCTCCTTCTCCTCTCCCTCCTCG
TCTCTCTCACCATCTCTATTGTCCCGCTCTCGCAAAACGCCTTTGGGGCC
ACGGCCCATGCCACCTGCTGGCTCGTCAACATCCGCATGACCAGTGCCCC
CTTTCTCCTCAACAAAATAATCGTCCTTCCAATCTGCTGGCTCTTCGTCG
GCTATTTCTACGCCCTCACTTTGGCCCATATCTGGCGACAACCGTCCTCC
GGCCCCCTCACCCTGCCAGTCATCAAGTCCTACCAACGCCTCCGCAGACG
CCTTTTCCTCTTCGCATTCGTCTTCTTCCTCTGCTGGACACTCAATGCCC
TCTGGTACCTCCTGCTGGCCATCAGGCCGTCCTCCCTCCCTCGTTCCTTT
CCTCTCTTCCTCGTCCTGGGGGTGATGGCAAAGTTCTCTTATGCGCTCGG
TCTTTTGGACGCCCTGGCTTATGGGCTTGGGAGTAGCAGCATGGGTGGGG
TCACTTTTACGTGCCAGAGGATGAGGGCAGGAGGGAGGAACAGGGTGGGT
GAGTGGTGGAGGAGTATTGTGCGTCGGTG
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protein sequence of jgi.p|Nanoce1779_2|599389

>mRNA_7623-protein ID=mRNA_7623-protein|Name=jgi.p|Nanoce1779_2|599389|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MAAPPPSPPFAPPPDPTIASPPKASWTNQYISPHDAQTLFVESLVILFLS
ILATLSVLLAILHRHVCLLFWRPFLLLLKASSSYLPRPRHYFPDKASFLL
HLLFFSSDLPSLPIGSTTGVTRGTRQNDVDGTAKSANFLTSSSWSCLGLS
YGCLSIGWLAPFSRSSCMAGARLEWKPGRR*
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mRNA from alignment at scaffold_20:401875..403203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7623 ID=mRNA_7623|Name=jgi.p|Nanoce1779_2|599389|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_20:401875..403203- (Nannochloropsis oceanica)
CAGGATCATAAGCAACAATCGTGCTTACGTGGTGTGGGTTGTCCTGAAAT
TTTCCGCGGAGGTCTTCCATGGCGGCTCCTCCTCCCTCCCCTCCCTTTGC
TCCTCCCCCCGACCCCACCATCGCATCCCCCCCAAAGGCATCTTGGACCA
ATCAATACATCTCACCGCATGACGCTCAGACTCTCTTTGTAGAAAGCCTT
GTTATCCTCTTCCTCTCCATCCTGGCCACGCTGTCCGTGCTGCTGGCGAT
CCTCCACAGGCACGTGTGCTTGTTGTTCTGGCGGCCATTTCTCCTCCTCC
TGAAAGCTTCCTCTTCTTACCTTCCCCGACCCAGACACTATTTTCCCGAT
AAAGCCTCATTTTTGCTTCATCTTCTTTTCTTTTCTTCTGATCTCCCCTC
ACTCCCCATAGGAAGTACAACCGGCGTGACCAGAGGCACCAGGCAGAACG
ACGTCGACGGCACCGCGAAATCCGCAAATTTCTTGACTTCATCGTCCTGG
TCTTGTTTGGGTTTGAGCTATGGCTGTCTCTCAATTGGATGGCTGGCACC
ATTCTCTCGGAGCAGTTGCATGGCCGGAGCTCGTTTGGAGTGGAAGCCAG
GGAGGAGATGACGAGGCGAGGGTGGGAGGGAAGGAGGAAGGCCTGTCGGG
TCGTGGGGGGATTGATCTACGCCATTGAGATCGTTCTTTACTTGTGGAAT
GCGTGCCTGGCCTACAGCATCTATTCATGGATCGTCAAAAAAGCCCTCCT
CCGACGCCTGTACGACCGCATGCAGTTCCTCCTTCTCCTCTCCCTCCTCG
TCTCTCTCACCATCTCTATTGTCCCGCTCTCGCAAAACGCCTTTGGGGCC
ACGGCCCATGCCACCTGCTGGCTCGTCAACATCCGCATGACCAGTGCCCC
CTTTCTCCTCAACAAAATAATCGTCCTTCCAATCTGCTGGCTCTTCGTCG
GCTATTTCTACGCCCTCACTTTGGCCCATATCTGGCGACAACCGTCCTCC
GGCCCCCTCACCCTGCCAGTCATCAAGTCCTACCAACGCCTCCGCAGACG
CCTTTTCCTCTTCGCATTCGTCTTCTTCCTCTGCTGGACACTCAATGCCC
TCTGGTACCTCCTGCTGGCCATCAGGCCGTCCTCCCTCCCTCGTTCCTTT
CCTCTCTTCCTCGTCCTGGGGGTGATGGCAAAGTTCTCTTATGCGCTCGG
TCTTTTGGACGCCCTGGCTTATGGGCTTGGGAGTAGCAGCATGGGTGGGG
TCACTTTTACGTGCCAGAGGATGAGGGCAGGAGGGAGGAACAGGGTGGGT
GAGTGGTGGAGGAGTATTGTGCGTCGGTG
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Coding sequence (CDS) from alignment at scaffold_20:401875..403203-

>mRNA_7623 ID=mRNA_7623|Name=jgi.p|Nanoce1779_2|599389|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_20:401875..403203- (Nannochloropsis oceanica)
ATGGCGGCTCCTCCTCCCTCCCCTCCCTTTGCTCCTCCCCCCGACCCCAC
CATCGCATCCCCCCCAAAGGCATCTTGGACCAATCAATACATCTCACCGC
ATGACGCTCAGACTCTCTTTGTAGAAAGCCTTGTTATCCTCTTCCTCTCC
ATCCTGGCCACGCTGTCCGTGCTGCTGGCGATCCTCCACAGGCACGTGTG
CTTGTTGTTCTGGCGGCCATTTCTCCTCCTCCTGAAAGCTTCCTCTTCTT
ACCTTCCCCGACCCAGACACTATTTTCCCGATAAAGCCTCATTTTTGCTT
CATCTTCTTTTCTTTTCTTCTGATCTCCCCTCACTCCCCATAGGAAGTAC
AACCGGCGTGACCAGAGGCACCAGGCAGAACGACGTCGACGGCACCGCGA
AATCCGCAAATTTCTTGACTTCATCGTCCTGGTCTTGTTTGGGTTTGAGC
TATGGCTGTCTCTCAATTGGATGGCTGGCACCATTCTCTCGGAGCAGTTG
CATGGCCGGAGCTCGTTTGGAGTGGAAGCCAGGGAGGAGATGA
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Synonyms
Publications