jgi.p|Nanoce1779_2|599380, mRNA_7620 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599380
Unique NamemRNA_7620
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1207
Alignment locationscaffold_20:393947..395153 +

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Properties
Property NameValue
TranscriptId599466
TrackFilteredModels2
ProteinId599380
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:393947..395153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599380gene_7620Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599380mRNA_7620-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7620CDS_7620Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7620 ID=mRNA_7620|Name=jgi.p|Nanoce1779_2|599380|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp
TCCGGGAGGGAGGGTTGGGAGGGGACCGAAAGCCCTGGGGCTATTGGAAA
GATATTTCCCAGATCAAGACGTCCGTGGAGGAGTTCTGGGAGGGGTTGAA
CATAAGCAGCTCGGCAATCCCGAACGAGATGTTGCTGCGGCTCTATGATG
CCCACGGACTCCGGCACGCCATCTACAAGCAGGGGGGAAGGGAGACCCTG
GCCTACCTCCTCGGCACTGACTATATTCCGGGGGACTTTCGACAAGCCAT
GAGCTTCCCGGAGGTCCAGGCGCTAGTCGATGCCGGCGTCATTGTGCCCC
ACGGGGACCCGCAATCCCAAGCCCTTCTCTCCCCTCCTCCCTCCCTCCAA
CACCAACGGATCGAGCGCCGGCTCGTCATTGGCCCTCGCGGCGGTGCTGT
CATTTTGAATGAGCGTCTCAAGACGACGCGTTTCCCCCCCTCCCATGGGA
AGCACGACAAGGACGGGGTCCCCGGGGGATGGAAGTACCAGAACCGGACC
GTCTGGAGCATGGAGAAACTCGCCGACGAGTGCTATCTAGTCGCAGAGGA
GCACTCCGCAGCCCTTCACCTCCCCCTGCTCTTCTTTCCCAAGATTAGTG
ACCTGGTTGGGTGGGGTCGCGCGAACATGATCAATACCATCCGGCGGTAC
GGCGGGTACGAGAGCGTGGTGTGCTCCCTGGGATTCATCCCCTTCTCGCA
GTGGAGCTACTTCTGTCGGTTTTATTTGTTGATGAAGGACCTCAAGACAT
ACCTGGATGAAGAGGAGGGAGGGCGGCGGGAGATGCCCACGTTGAGGGAC
ATCAAGCGGGCGGGCTACCACCGCCTGCACTCAGAGGTGGCGAGGAACGG
AGGGAGGAAGCTCGTGGCGGCCCGGCTGGGGCTGCCCTTGAAGGCAGGGA
GTGGGGAGAGAGGCAAGTTCGCGTCGAGGATTAGCTACGGGACTTTTGAC
TTTGACTTTGGCGTGGCGCTCTTGGAGTACATTATGAACAAATGCTGGGC
GCAGCACCCACGGGAGCGCGCGGGGAGGAAAGAGCGGGAGAAGGTAAACT
TGTTTTTACCGACGGCGGAGGAGCTGGTTGGGGACGAGCGGAGAGATTTG
CTGGAGAAGATAATTCGGTATGGCGGTTTCGAGAACGTGGCGCGACGGTT
GCAGTTGGGCTTTAAGAGCTAGTGGAGGAGAGGAGGGAGGGAGGGAAGGA
GGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|599380

>mRNA_7620-protein ID=mRNA_7620-protein|Name=jgi.p|Nanoce1779_2|599380|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MLLRLYDAHGLRHAIYKQGGRETLAYLLGTDYIPGDFRQAMSFPEVQALV
DAGVIVPHGDPQSQALLSPPPSLQHQRIERRLVIGPRGGAVILNERLKTT
RFPPSHGKHDKDGVPGGWKYQNRTVWSMEKLADECYLVAEEHSAALHLPL
LFFPKISDLVGWGRANMINTIRRYGGYESVVCSLGFIPFSQWSYFCRFYL
LMKDLKTYLDEEEGGRREMPTLRDIKRAGYHRLHSEVARNGGRKLVAARL
GLPLKAGSGERGKFASRISYGTFDFDFGVALLEYIMNKCWAQHPRERAGR
KEREKVNLFLPTAEELVGDERRDLLEKIIRYGGFENVARRLQLGFKS*
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mRNA from alignment at scaffold_20:393947..395153+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7620 ID=mRNA_7620|Name=jgi.p|Nanoce1779_2|599380|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp|location=Sequence derived from alignment at scaffold_20:393947..395153+ (Nannochloropsis oceanica)
TCCGGGAGGGAGGGTTGGGAGGGGACCGAAAGCCCTGGGGCTATTGGAAA
GATATTTCCCAGATCAAGACGTCCGTGGAGGAGTTCTGGGAGGGGTTGAA
CATAAGCAGCTCGGCAATCCCGAACGAGATGTTGCTGCGGCTCTATGATG
CCCACGGACTCCGGCACGCCATCTACAAGCAGGGGGGAAGGGAGACCCTG
GCCTACCTCCTCGGCACTGACTATATTCCGGGGGACTTTCGACAAGCCAT
GAGCTTCCCGGAGGTCCAGGCGCTAGTCGATGCCGGCGTCATTGTGCCCC
ACGGGGACCCGCAATCCCAAGCCCTTCTCTCCCCTCCTCCCTCCCTCCAA
CACCAACGGATCGAGCGCCGGCTCGTCATTGGCCCTCGCGGCGGTGCTGT
CATTTTGAATGAGCGTCTCAAGACGACGCGTTTCCCCCCCTCCCATGGGA
AGCACGACAAGGACGGGGTCCCCGGGGGATGGAAGTACCAGAACCGGACC
GTCTGGAGCATGGAGAAACTCGCCGACGAGTGCTATCTAGTCGCAGAGGA
GCACTCCGCAGCCCTTCACCTCCCCCTGCTCTTCTTTCCCAAGATTAGTG
ACCTGGTTGGGTGGGGTCGCGCGAACATGATCAATACCATCCGGCGGTAC
GGCGGGTACGAGAGCGTGGTGTGCTCCCTGGGATTCATCCCCTTCTCGCA
GTGGAGCTACTTCTGTCGGTTTTATTTGTTGATGAAGGACCTCAAGACAT
ACCTGGATGAAGAGGAGGGAGGGCGGCGGGAGATGCCCACGTTGAGGGAC
ATCAAGCGGGCGGGCTACCACCGCCTGCACTCAGAGGTGGCGAGGAACGG
AGGGAGGAAGCTCGTGGCGGCCCGGCTGGGGCTGCCCTTGAAGGCAGGGA
GTGGGGAGAGAGGCAAGTTCGCGTCGAGGATTAGCTACGGGACTTTTGAC
TTTGACTTTGGCGTGGCGCTCTTGGAGTACATTATGAACAAATGCTGGGC
GCAGCACCCACGGGAGCGCGCGGGGAGGAAAGAGCGGGAGAAGGTAAACT
TGTTTTTACCGACGGCGGAGGAGCTGGTTGGGGACGAGCGGAGAGATTTG
CTGGAGAAGATAATTCGGTATGGCGGTTTCGAGAACGTGGCGCGACGGTT
GCAGTTGGGCTTTAAGAGCTAGTGGAGGAGAGGAGGGAGGGAGGGAAGGA
GGGAGGG
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Coding sequence (CDS) from alignment at scaffold_20:393947..395153+

>mRNA_7620 ID=mRNA_7620|Name=jgi.p|Nanoce1779_2|599380|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_20:393947..395153+ (Nannochloropsis oceanica)
ATGTTGCTGCGGCTCTATGATGCCCACGGACTCCGGCACGCCATCTACAA
GCAGGGGGGAAGGGAGACCCTGGCCTACCTCCTCGGCACTGACTATATTC
CGGGGGACTTTCGACAAGCCATGAGCTTCCCGGAGGTCCAGGCGCTAGTC
GATGCCGGCGTCATTGTGCCCCACGGGGACCCGCAATCCCAAGCCCTTCT
CTCCCCTCCTCCCTCCCTCCAACACCAACGGATCGAGCGCCGGCTCGTCA
TTGGCCCTCGCGGCGGTGCTGTCATTTTGAATGAGCGTCTCAAGACGACG
CGTTTCCCCCCCTCCCATGGGAAGCACGACAAGGACGGGGTCCCCGGGGG
ATGGAAGTACCAGAACCGGACCGTCTGGAGCATGGAGAAACTCGCCGACG
AGTGCTATCTAGTCGCAGAGGAGCACTCCGCAGCCCTTCACCTCCCCCTG
CTCTTCTTTCCCAAGATTAGTGACCTGGTTGGGTGGGGTCGCGCGAACAT
GATCAATACCATCCGGCGGTACGGCGGGTACGAGAGCGTGGTGTGCTCCC
TGGGATTCATCCCCTTCTCGCAGTGGAGCTACTTCTGTCGGTTTTATTTG
TTGATGAAGGACCTCAAGACATACCTGGATGAAGAGGAGGGAGGGCGGCG
GGAGATGCCCACGTTGAGGGACATCAAGCGGGCGGGCTACCACCGCCTGC
ACTCAGAGGTGGCGAGGAACGGAGGGAGGAAGCTCGTGGCGGCCCGGCTG
GGGCTGCCCTTGAAGGCAGGGAGTGGGGAGAGAGGCAAGTTCGCGTCGAG
GATTAGCTACGGGACTTTTGACTTTGACTTTGGCGTGGCGCTCTTGGAGT
ACATTATGAACAAATGCTGGGCGCAGCACCCACGGGAGCGCGCGGGGAGG
AAAGAGCGGGAGAAGGTAAACTTGTTTTTACCGACGGCGGAGGAGCTGGT
TGGGGACGAGCGGAGAGATTTGCTGGAGAAGATAATTCGGTATGGCGGTT
TCGAGAACGTGGCGCGACGGTTGCAGTTGGGCTTTAAGAGCTAG
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Synonyms
Publications