jgi.p|Nanoce1779_2|632384, mRNA_7619 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632384
Unique Name	mRNA_7619
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1961
Alignment location	scaffold_20:388501..390788 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632470
Track	FilteredModels2
ProteinId	632384

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:388501..390788 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632384	gene_7619	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632384	mRNA_7619-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7619	CDS_7619	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:388501..390788+
coding sequence from alignment at scaffold_20:388501..390788+

mRNA sequence

>mRNA_7619 ID=mRNA_7619|Name=jgi.p|Nanoce1779_2|632384|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp
AGGGGGCAAGGAGTACATGCGAGCTCTCATCCCTGCTGTCTGCTGTTTAC
TATTTCACAGGCAACCACACAGCTCTTCCTTCTAAATAAGAACGGGTACG
CACACGACCCGTGCCCACTCTGGCATTGTGCATCGAACTAGGCGTTAACA
ATCGAGTATCAGGGATCTAGGCACGATTTTGTGGCGCTTTAAATGTAGAA
AGACACCCACCGCCACTGCTCACGTGTCCCAATGAATTCTTCCCGTCCAA
ACATATACGCTTAATGAGCCCTCAGGGAACGTACCCGTCCTTTCCACACC
TACACCGATATAACTACAGCAGTGGCTAAACACTCTCTGGTAGGCTCTAC
ACGGTACTTGCGGGCTTTTAGGGCCAATTCGTCCCTCCTTCATCTCCCAT
CTCTCCTCCTTTTTATGGAGGGCAAGACGGACGACCTCTCAATGGTCCTG
TCGCAGTCCAAGCCCATCCCATCTCGCCTAGCATCGGATGGCCTTGAGAC
CGGTAGCTCCAGCACCAGCATGGACAGCACCTCGCATACCTGCTGCGGCA
ACCTAGGATTTGCAGCGGGGCTCTCTCCGTCCTCCTCCGTCCTCTTTGGG
CGTAGTGTCGCCCACGCGCAAGACCACATAGGAATGAGGGCCACGGTGGC
AAATGCAGACTCCCCACTTCTTCACGTAGTCGACCACACCTTTCCTATCC
TCCCTCTCGAAAACGGGGAAGAGATAGGAGAGGAATGGGGGGTTGGAAAA
GAGGAGGACAATGACAATAACGAGGCTACCAAACAGTTCTGCTTCAAGGC
GTCTAAGATCAAGCTTCCTTCATCGCAGCAGGAGAGCCGCTCGCGTCCCC
CTCCTCTCCTCCCCAAACAGGAACAAACAGTCGCTAGTACAATTACTAAG
AAAAAGCTCACCTCCCCCGCCACAGCTACAACCGAATCCACGGGTGCAAC
TGGCTTCATCGCCGCCAGTGCTCCCAGTATCAGCAGAAGGGTCAAGACTG
GTAGTAGCAGCAGCAGCAACCCCTCTCATCATACTGCCAACTCCCGCCGC
TCGAAGCGGCGGACAGCTAGTGGTGTAGGGCTGAATCGTGACGGACAGCC
GCTGCAGCGCCACAACTGGAATGAGGCGGAAGATGCCTTGCTACGGGCCA
AGGTCTCCGAGATGGGCGAAAAGCAATGGAACGAGATCTCTGAGGCGCTC
CCAGGACGGAACCCCAAACAGTGCTATCAGCGATGGCACTACGCGCTGGT
CCCAGTGGAAGCCACACGAGCCTGGACGCCGGCCGAAGACATTAAGATAA
TTCATCTTTTTGAAGAGAACGGGACCAAATGGACAAGAAGCGCTACTCAC
TTGAAGGGTAGGAGCGGGTATGCGGTCAAGAATCGATTCAAACGCTTGCA
GAAGGAGCAGGCAGAGCTGAGGGGAAGGAGGTCGGGAGGAGGGGCCTTCG
ATGAGCTATTGAGGTCGCGGGCGATAGATGTGATGGCGGAGAAGAAGAAG
AGAGAGGATGCTAAGGAGGGAAGAGGAGCGGCGGAACAAGAAGGAGAGAG
AGGTGAGAAAGAGACTCAAGCAGTGGCAGAGGTGGAGCAAGGAAGAGTGC
GAAGTGAAAAAGCGAAGCGAATCAGCACAGGGAGTCGAAGTTTAATCGCG
ACAACTGCAGTCGCCGCCGCCGATGACATGGACGTGCCGCCCCCCATCAG
CAAGCGCGCACGCAATGACCATTCTCCCCCCTCCTCGTTGTCCACTGCCA
GCGTCTCAAAGGGAAGGAAAGTGGATGCGACACCCAGGCAGAAGGCGACA
AAGCAGCGGAATAGGGAGTACGATAAAGGAGGGAAGAGATGGAAAGATGT
GCACCACTACCTATACCAACCGGATCAGGAGCAGCAGCAGCAGCCGCAAC
AACAACAACAACAACAACAACAACGACGACGACGACAACAACAACAACAA
CAACAACAACG

protein sequence of jgi.p|Nanoce1779_2|632384

>mRNA_7619-protein ID=mRNA_7619-protein|Name=jgi.p|Nanoce1779_2|632384|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MEGKTDDLSMVLSQSKPIPSRLASDGLETGSSSTSMDSTSHTCCGNLGFA
AGLSPSSSVLFGRSVAHAQDHIGMRATVANADSPLLHVVDHTFPILPLEN
GEEIGEEWGVGKEEDNDNNEATKQFCFKASKIKLPSSQQESRSRPPPLLP
KQEQTVASTITKKKLTSPATATTESTGATGFIAASAPSISRRVKTGSSSS
SNPSHHTANSRRSKRRTASGVGLNRDGQPLQRHNWNEAEDALLRAKVSEM
GEKQWNEISEALPGRNPKQCYQRWHYALVPVEATRAWTPAEDIKIIHLFE
ENGTKWTRSATHLKGRSGYAVKNRFKRLQKEQAELRGRRSGGGAFDELLR
SRAIDVMAEKKKREDAKEGRGAAEQEGERGEKETQAVAEVEQGRVRSEKA
KRISTGSRSLIATTAVAAADDMDVPPPISKRARNDHSPPSSLSTASVSKG
RKVDATPRQKATKQRNREYDKGGKRWKDVHHYLYQPDQEQQQQPQQQQQQ
QQQRRRRQQQQQQQQ

mRNA from alignment at scaffold_20:388501..390788+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7619 ID=mRNA_7619|Name=jgi.p|Nanoce1779_2|632384|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp|location=Sequence derived from alignment at scaffold_20:388501..390788+ (Nannochloropsis oceanica)
AGGGGGCAAGGAGTACATGCGAGCTCTCATCCCTGCTGTCTGCTGTTTAC
TATTTCACAGGCAACCACACAGCTCTTCCTTCTAAATAAGAACGGGTACG
CACACGACCCGTGCCCACTCTGGCATTGTGCATCGAACTAGGCGTTAACA
ATCGAGTATCAGGGATCTAGGCACGATTTTGTGGCGCTTTAAATGTAGAA
AGACACCCACCGCCACTGCTCACGTGTCCCAATGAATTCTTCCCGTCCAA
ACATATACGCTTAATGAGCCCTCAGGGAACGTACCCGTCCTTTCCACACC
TACACCGATATAACTACAGCAGTGGCTAAACACTCTCTGGTAGGCTCTAC
ACGGTACTTGCGGGCTTTTAGGGCCAATTCGTCCCTCCTTCATCTCCCAT
CTCTCCTCCTTTTTATGGAGGGCAAGACGGACGACCTCTCAATGGTCCTG
TCGCAGTCCAAGCCCATCCCATCTCGCCTAGCATCGGATGGCCTTGAGAC
CGGTAGCTCCAGCACCAGCATGGACAGCACCTCGCATACCTGCTGCGGCA
ACCTAGGATTTGCAGCGGGGCTCTCTCCGTCCTCCTCCGTCCTCTTTGGG
CGTAGTGTCGCCCACGCGCAAGACCACATAGGAATGAGGGCCACGGTGGC
AAATGCAGACTCCCCACTTCTTCACGTAGTCGACCACACCTTTCCTATCC
TCCCTCTCGAAAACGGGGAAGAGATAGGAGAGGAATGGGGGGTTGGAAAA
GAGGAGGACAATGACAATAACGAGGCTACCAAACAGTTCTGCTTCAAGGC
GTCTAAGATCAAGCTTCCTTCATCGCAGCAGGAGAGCCGCTCGCGTCCCC
CTCCTCTCCTCCCCAAACAGGAACAAACAGTCGCTAGTACAATTACTAAG
AAAAAGCTCACCTCCCCCGCCACAGCTACAACCGAATCCACGGGTGCAAC
TGGCTTCATCGCCGCCAGTGCTCCCAGTATCAGCAGAAGGGTCAAGACTG
GTAGTAGCAGCAGCAGCAACCCCTCTCATCATACTGCCAACTCCCGCCGC
TCGAAGCGGCGGACAGCTAGTGGTGTAGGGCTGAATCGTGACGGACAGCC
GCTGCAGCGCCACAACTGGAATGAGGCGGAAGATGCCTTGCTACGGGCCA
AGGTCTCCGAGATGGGCGAAAAGCAATGGAACGAGATCTCTGAGGCGCTC
CCAGGACGGAACCCCAAACAGTGCTATCAGCGGTAAGATGCGGGCGCACA
TTTAGATGTGTCTGCACACATGTGCCTATCTGTCTGTGTGTTGGTTTGTT
TGAGTGCGACCCATATACTTAGCCACGATAAACTTTGCATGCGCCCTATC
CTTTGTCGTTCATTCTGATACCATTTATCTCATCGAGATTTCAGTAAATC
TTTTGTCGAGCACTATCATCAAAAGGCTGAGGGCCTTTCAATTTGACATT
CTCATTGTTCTACCATAGACCCCGGGAAAAATATCAAAATCATCGTTCAC
TGACCAATGCACTTCCACTCACTCATTTACCGTTCCTCCCTCCATCTTTC
CATCTACAGATGGCACTACGCGCTGGTCCCAGTGGAAGCCACACGAGCCT
GGACGCCGGCCGAAGACATTAAGATAATTCATCTTTTTGAAGAGAACGGG
ACCAAATGGACAAGAAGCGCTACTCACTTGAAGGGTAGGAGCGGGTATGC
GGTCAAGAATCGATTCAAACGCTTGCAGAAGGAGCAGGCAGAGCTGAGGG
GAAGGAGGTCGGGAGGAGGGGCCTTCGATGAGCTATTGAGGTCGCGGGCG
ATAGATGTGATGGCGGAGAAGAAGAAGAGAGAGGATGCTAAGGAGGGAAG
AGGAGCGGCGGAACAAGAAGGAGAGAGAGGTGAGAAAGAGACTCAAGCAG
TGGCAGAGGTGGAGCAAGGAAGAGTGCGAAGTGAAAAAGCGAAGCGAATC
AGCACAGGGAGTCGAAGTTTAATCGCGACAACTGCAGTCGCCGCCGCCGA
TGACATGGACGTGCCGCCCCCCATCAGCAAGCGCGCACGCAATGACCATT
CTCCCCCCTCCTCGTTGTCCACTGCCAGCGTCTCAAAGGGAAGGAAAGTG
GATGCGACACCCAGGCAGAAGGCGACAAAGCAGCGGAATAGGGAGTACGA
TAAAGGAGGGAAGAGATGGAAAGATGTGCACCACTACCTATACCAACCGG
ATCAGGAGCAGCAGCAGCAGCCGCAACAACAACAACAACAACAACAACAA
CGACGACGACGACAACAACAACAACAACAACAACAACG

Coding sequence (CDS) from alignment at scaffold_20:388501..390788+

>mRNA_7619 ID=mRNA_7619|Name=jgi.p|Nanoce1779_2|632384|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_20:388501..390788+ (Nannochloropsis oceanica)
ATGGAGGGCAAGACGGACGACCTCTCAATGGTCCTGTCGCAGTCCAAGCC
CATCCCATCTCGCCTAGCATCGGATGGCCTTGAGACCGGTAGCTCCAGCA
CCAGCATGGACAGCACCTCGCATACCTGCTGCGGCAACCTAGGATTTGCA
GCGGGGCTCTCTCCGTCCTCCTCCGTCCTCTTTGGGCGTAGTGTCGCCCA
CGCGCAAGACCACATAGGAATGAGGGCCACGGTGGCAAATGCAGACTCCC
CACTTCTTCACGTAGTCGACCACACCTTTCCTATCCTCCCTCTCGAAAAC
GGGGAAGAGATAGGAGAGGAATGGGGGGTTGGAAAAGAGGAGGACAATGA
CAATAACGAGGCTACCAAACAGTTCTGCTTCAAGGCGTCTAAGATCAAGC
TTCCTTCATCGCAGCAGGAGAGCCGCTCGCGTCCCCCTCCTCTCCTCCCC
AAACAGGAACAAACAGTCGCTAGTACAATTACTAAGAAAAAGCTCACCTC
CCCCGCCACAGCTACAACCGAATCCACGGGTGCAACTGGCTTCATCGCCG
CCAGTGCTCCCAGTATCAGCAGAAGGGTCAAGACTGGTAGTAGCAGCAGC
AGCAACCCCTCTCATCATACTGCCAACTCCCGCCGCTCGAAGCGGCGGAC
AGCTAGTGGTGTAGGGCTGAATCGTGACGGACAGCCGCTGCAGCGCCACA
ACTGGAATGAGGCGGAAGATGCCTTGCTACGGGCCAAGGTCTCCGAGATG
GGCGAAAAGCAATGGAACGAGATCTCTGAGGCGCTCCCAGGACGGAACCC
CAAACAGTGCTATCAGCGATGGCACTACGCGCTGGTCCCAGTGGAAGCCA
CACGAGCCTGGACGCCGGCCGAAGACATTAAGATAATTCATCTTTTTGAA
GAGAACGGGACCAAATGGACAAGAAGCGCTACTCACTTGAAGGGTAGGAG
CGGGTATGCGGTCAAGAATCGATTCAAACGCTTGCAGAAGGAGCAGGCAG
AGCTGAGGGGAAGGAGGTCGGGAGGAGGGGCCTTCGATGAGCTATTGAGG
TCGCGGGCGATAGATGTGATGGCGGAGAAGAAGAAGAGAGAGGATGCTAA
GGAGGGAAGAGGAGCGGCGGAACAAGAAGGAGAGAGAGGTGAGAAAGAGA
CTCAAGCAGTGGCAGAGGTGGAGCAAGGAAGAGTGCGAAGTGAAAAAGCG
AAGCGAATCAGCACAGGGAGTCGAAGTTTAATCGCGACAACTGCAGTCGC
CGCCGCCGATGACATGGACGTGCCGCCCCCCATCAGCAAGCGCGCACGCA
ATGACCATTCTCCCCCCTCCTCGTTGTCCACTGCCAGCGTCTCAAAGGGA
AGGAAAGTGGATGCGACACCCAGGCAGAAGGCGACAAAGCAGCGGAATAG
GGAGTACGATAAAGGAGGGAAGAGATGGAAAGATGTGCACCACTACCTAT
ACCAACCGGATCAGGAGCAGCAGCAGCAGCCGCAACAACAACAACAACAA
CAACAACAACGACGACGACGACAACAACAACAACAACAACAACAAATGGA
GGGCAAGACGGACGACCTCTCAATGGTCCTGTCGCAGTCCAAGCCCATCC
CATCTCGCCTAGCATCGGATGGCCTTGAGACCGGTAGCTCCAGCACCAGC
ATGGACAGCACCTCGCATACCTGCTGCGGCAACCTAGGATTTGCAGCGGG
GCTCTCTCCGTCCTCCTCCGTCCTCTTTGGGCGTAGTGTCGCCCACGCGC
AAGACCACATAGGAATGAGGGCCACGGTGGCAAATGCAGACTCCCCACTT
CTTCACGTAGTCGACCACACCTTTCCTATCCTCCCTCTCGAAAACGGGGA
AGAGATAGGAGAGGAATGGGGGGTTGGAAAAGAGGAGGACAATGACAATA
ACGAGGCTACCAAACAGTTCTGCTTCAAGGCGTCTAAGATCAAGCTTCCT
TCATCGCAGCAGGAGAGCCGCTCGCGTCCCCCTCCTCTCCTCCCCAAACA
GGAACAAACAGTCGCTAGTACAATTACTAAGAAAAAGCTCACCTCCCCCG
CCACAGCTACAACCGAATCCACGGGTGCAACTGGCTTCATCGCCGCCAGT
GCTCCCAGTATCAGCAGAAGGGTCAAGACTGGTAGTAGCAGCAGCAGCAA
CCCCTCTCATCATACTGCCAACTCCCGCCGCTCGAAGCGGCGGACAGCTA
GTGGTGTAGGGCTGAATCGTGACGGACAGCCGCTGCAGCGCCACAACTGG
AATGAGGCGGAAGATGCCTTGCTACGGGCCAAGGTCTCCGAGATGGGCGA
AAAGCAATGGAACGAGATCTCTGAGGCGCTCCCAGGACGGAACCCCAAAC
AGTGCTATCAGCGATGGCACTACGCGCTGGTCCCAGTGGAAGCCACACGA
GCCTGGACGCCGGCCGAAGACATTAAGATAATTCATCTTTTTGAAGAGAA
CGGGACCAAATGGACAAGAAGCGCTACTCACTTGAAGGGTAGGAGCGGGT
ATGCGGTCAAGAATCGATTCAAACGCTTGCAGAAGGAGCAGGCAGAGCTG
AGGGGAAGGAGGTCGGGAGGAGGGGCCTTCGATGAGCTATTGAGGTCGCG
GGCGATAGATGTGATGGCGGAGAAGAAGAAGAGAGAGGATGCTAAGGAGG
GAAGAGGAGCGGCGGAACAAGAAGGAGAGAGAGGTGAGAAAGAGACTCAA
GCAGTGGCAGAGGTGGAGCAAGGAAGAGTGCGAAGTGAAAAAGCGAAGCG
AATCAGCACAGGGAGTCGAAGTTTAATCGCGACAACTGCAGTCGCCGCCG
CCGATGACATGGACGTGCCGCCCCCCATCAGCAAGCGCGCACGCAATGAC
CATTCTCCCCCCTCCTCGTTGTCCACTGCCAGCGTCTCAAAGGGAAGGAA
AGTGGATGCGACACCCAGGCAGAAGGCGACAAAGCAGCGGAATAGGGAGT
ACGATAAAGGAGGGAAGAGATGGAAAGATGTGCACCACTACCTATACCAA
CCGGATCAGGAGCAGCAGCAGCAGCCGCAACAACAACAACAACAACAACA
ACAACGACGACGACGACAACAACAACAACAACAACAACAA

Synonyms

Publications