jgi.p|Nanoce1779_2|599373, mRNA_7618 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599373
Unique NamemRNA_7618
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length353
Alignment locationscaffold_20:386793..387675 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599459
TrackFilteredModels2
ProteinId599373
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:386793..387675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599373gene_7618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599373mRNA_7618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7618CDS_7618Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7618 ID=mRNA_7618|Name=jgi.p|Nanoce1779_2|599373|organism=Nannochloropsis oceanica|type=mRNA|length=353bp
CAGTTGAGCAAAGCCATGGCGGCATCCCCACCATCACGGGAAGGCAGCGA
CAAACCGCTTTGGCACATGGACTGGGAAGTTTGTGGCAAGGTCCAAGGGG
TATGGTTCCGGAGATACACGGTCGAAAAGGCACAATCATTGGGTTTGGTG
GGTTGGTGCTCAAATACAGTTTGTGGAACTGTCAAAGGGGAGGCAGAGGG
GCCTCCCGAGATGCTGGAGGTCTTTCGGTATTGGCTACAAAACGAGGGAT
CGCCACAATCGCGGGTGAGCAACGCAATTTTCAAGAACGAGCGTCGGATC
GATATAACCAATTACAAAGACTTTGGGGTGCGGAATGGCTGAACAGGGGA
TGA
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protein sequence of jgi.p|Nanoce1779_2|599373

>mRNA_7618-protein ID=mRNA_7618-protein|Name=jgi.p|Nanoce1779_2|599373|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MAASPPSREGSDKPLWHMDWEVCGKVQGVWFRRYTVEKAQSLGLVGWCSN
TVCGTVKGEAEGPPEMLEVFRYWLQNEGSPQSRVSNAIFKNERRIDITNY
KDFGVRNG*
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mRNA from alignment at scaffold_20:386793..387675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7618 ID=mRNA_7618|Name=jgi.p|Nanoce1779_2|599373|organism=Nannochloropsis oceanica|type=mRNA|length=883bp|location=Sequence derived from alignment at scaffold_20:386793..387675+ (Nannochloropsis oceanica)
CAGTTGAGCAAAGCCATGGCGGCATCCCCACCATCACGGGAAGGCAGCGA
CAAACCGCTTTGGCACATGGACTGGGAAGTTTGTGGCAAGGTGAGTGCGA
AAGCTAGAAGGAGGGAAGAAATAGAAGATGATTATCAATCGCCGATGAGG
AGGAGCAGCAATTGTTCTAGGAAAGTGTGTAATCGCACCGCCTCAACAAA
TGTAGGGCTCTCATTCATCCTTGCTGAAACGAGCAACAAGATGAGAGACT
GGAGACATCCAGCATCGCTCATGCCGACTGCAACGACAAGAGAGATTATC
AACAGCTGTTGCCTATACCTTGTGCTCGCTCCTCTCATCCTCTTATCTAA
ACTCGTCCTTCACCAACACTTCCCCCTCTCACGCACGCGCACATCAGGTC
CAAGGGGTATGGTTCCGGAGATACACGGTCGAAAAGGCACAATCATTGGG
TTTGGTGGGTTGGTGCTCAAATACAGTTTGTGGAACTGTCAAAGGGGAGG
CAGAGGGGCCTCCCGAGATGCTGGAGGTCTTTCGGTGCGTTTATTGTTGG
GGAATATAGAGGGGGGGCACAAAGAGGGAGGGAGGGAAGACGCGTGGAAC
GTTTGGGGAGCGAAAGACTATCTCAGGTAAAAGAAATGACGGGAGAGGGA
GAAGTGATCGTGTCCTTGTCCTTGGAATTTTGTTCTCTTGATTGTGCCCT
ACCCCGATCACTGTCCTCTTCTCCAGTCTCACGCTCAATTTTCTCCTGTC
ACATCAGGTATTGGCTACAAAACGAGGGATCGCCACAATCGCGGGTGAGC
AACGCAATTTTCAAGAACGAGCGTCGGATCGATATAACCAATTACAAAGA
CTTTGGGGTGCGGAATGGCTGAACAGGGGATGA
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Coding sequence (CDS) from alignment at scaffold_20:386793..387675+

>mRNA_7618 ID=mRNA_7618|Name=jgi.p|Nanoce1779_2|599373|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_20:386793..387675+ (Nannochloropsis oceanica)
ATGGCGGCATCCCCACCATCACGGGAAGGCAGCGACAAACCGCTTTGGCA
CATGGACTGGGAAGTTTGTGGCAAGGTCCAAGGGGTATGGTTCCGGAGAT
ACACGGTCGAAAAGGCACAATCATTGGGTTTGGTGGGTTGGTGCTCAAAT
ACAGTTTGTGGAACTGTCAAAGGGGAGGCAGAGGGGCCTCCCGAGATGCT
GGAGGTCTTTCGGTATTGGCTACAAAACGAGGGATCGCCACAATCGCGGG
TGAGCAACGCAATTTTCAAGAACGAGCGTCGGATCGATATAACCAATTAC
AAAGACTTTGGGGTGCGGAATGGCTGAATGGCGGCATCCCCACCATCACG
GGAAGGCAGCGACAAACCGCTTTGGCACATGGACTGGGAAGTTTGTGGCA
AGGTCCAAGGGGTATGGTTCCGGAGATACACGGTCGAAAAGGCACAATCA
TTGGGTTTGGTGGGTTGGTGCTCAAATACAGTTTGTGGAACTGTCAAAGG
GGAGGCAGAGGGGCCTCCCGAGATGCTGGAGGTCTTTCGGTATTGGCTAC
AAAACGAGGGATCGCCACAATCGCGGGTGAGCAACGCAATTTTCAAGAAC
GAGCGTCGGATCGATATAACCAATTACAAAGACTTTGGGGTGCGGAATGG
CTGAATGGCGGCATCCCCACCATCACGGGAAGGCAGCGACAAACCGCTTT
GGCACATGGACTGGGAAGTTTGTGGCAAGGTCCAAGGGGTATGGTTCCGG
AGATACACGGTCGAAAAGGCACAATCATTGGGTTTGGTGGGTTGGTGCTC
AAATACAGTTTGTGGAACTGTCAAAGGGGAGGCAGAGGGGCCTCCCGAGA
TGCTGGAGGTCTTTCGGTATTGGCTACAAAACGAGGGATCGCCACAATCG
CGGGTGAGCAACGCAATTTTCAAGAACGAGCGTCGGATCGATATAACCAA
TTACAAAGACTTTGGGGTGCGGAATGGCTGA
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Synonyms
Publications