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Properties
| Property Name | Value |
|---|
| TranscriptId | 653977 |
| Track | FilteredModels2 |
| ProteinId | 653891 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:376840..379534 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7614 ID=mRNA_7614|Name=jgi.p|Nanoce1779_2|653891|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp
GAATTTGATGTCTTGCTGCCAATGAAAAGGTAAAAGTAAAGAGTACACCA
CGAGTCAAGAAAAAAATCGTTGGGCTTGTGTTTTCGCTGGAGGCTCATAT
CATGTGAGAAGGGAAATGAGTATGGAAAAAATGCCATAGTCACTCCGTGA
ATGTGACAGCCTATGTCAGCCAGAAGCAATCGGCAACTGCAGTCTCGATC
GTCATCAACGAATAGCCGGTCGGGGCCATGGCTTTCCATGCCTGCTGGAG
ACCATAAGCATGACATGTGCCCGCCCTATGCCACCGTCACAATACAGACA
AGTTTCGCAAGCAAGTATGACCGATGTCAGCGGCACCGAAGCTTCCGCAA
CCGCTTGTTGTACCCGCACATCTCCTCCTCTTCCACCCATTACAACCTCC
CCTCCTCTGGCCTCACAACCAGCCGCACTTCCCGTCATCGAAGAAGGCGC
CTGGGTAATCCTGCAAATGGGAGATGGCCGAAATTTTTTTGCTTGCGCGC
AGTCCAAGGGTATGATGCGTCTTGGTAGGGTTAATATCTCGCTCAGTGGA
TTGATAGGTGTGCCCTATGGCAGTGTCTTGGAGGTCCACCCGGATGGTCT
AGTCCCTCTGCCGGGTACGAACGAGCTCTACGAAGACCTTGCCGTGGGCG
ACATGGACGGAAACGAATTCACCCGAGGAGGAGGACCTGCGAGCGTGGGG
GAGTATGATGGTGCTACCTCGGATAACAGGGATTTTACGGACACAAACAC
GGCGCAGCGCATGACCATGGTCGAGATTGAAGAGCTCAAGAATAGTGGAG
CATCTGGCCACGCGATCATTCAAGCCTTGGCTTCGAATTCAGACACCTGG
GACAAAAAAACGGCGTTCGCAAAGCAGAAGTGGACCAGGAAAAAGGCGCA
TAAATACGTCGTGCGCGTCAGAGCAGTAGCCGGGAACGGGACAAATGTGG
TGCAAGCCCTCTTTGTGAAGTCGGGCCTTGTTAAGAGCACTGCCATCCGT
CCAGACAGTATCGCCCAACTCCTCTCCTATGGCAATGTCTCCGCCGGCTC
CCGTGTCTTGCTCTTCGATTCCTACTCGGGCGTGGTGCTGGGCTCGGTCC
TTGAGCGATTGGGAGGGTATGGAAATGTGGTGAATTTATTCGCGGGGGCT
CAGGCTCATATGGACCATGTCAAGTATTTTAATTTGCCCAAGGAACATTT
GGCCAGGACGCTGGTCCATTATCCGTTAACGGGATTGGCAGAGGCGGAGA
GGGCGAGGAGGAGGAGGATGGAGGCCGGGGTGGAGGAGGAGGAGGAGGAG
GGGGATAAGAGGTTCTTACCGACGGCCGAGGAGGAGGTCAAGGCGCGGGC
GTCGGGGAAGTTCGTCGTGTACCAGAAGCCAGTAGGTGTGAATGAAAGGG
TGGAGGAAGGGAAGATTGGCAAGGGAGAGGAAGAAGGGGATAGCTTTGAT
CGACCCAAGTGGTTGAAGTACCTGGAGAAGAAGCGGAGTCGTCTCCGGGC
CTTAGCGGAGGGCAGGAGATTGTTGTTGGAAGGGACAGATTGCTTGATCG
TAGCCTGTCGGCATGATCCGGCAGTTGTGGTGCCGAGGTTGTTGCCTTTC
ATGCAGGAGGGGGCGGCGTTTGCAGTGTACTGTGAGTTTTTGGAGCCCTT
GGTCGCCTTGCAGGACTTGTTGATGGACGCGGGCATGCTGAGACTGCAGT
TGCTGAGCACATGGTGGCGTGAGTATCAGGTTATGCCCGGCAGGTCACAT
CCGCATATGAACATGAGTGCGGATGGTGGGTGCGTCTTGACGGGCATAAA
GATAAGCGATGGCGATAAGATATGTGGGGGGCCCTCGATGGAGGGAGTGG
AGGCGCAGGAGCGGGAGGCGGTGGGGGGAAATGGAAATTCTAGAAAGCGG
TACCGGAAGCAGAGATGATTTTTGAATGAATGAAATACAGAAAAATTACT
CGAGTGGATATGTGCCTGGCACTGTGTTTCTGGTTGAGTGTGTCGTGGTT
TTCTTTTCTGCTTAACCCCGGTTAGGAGGTTGGATTAGGCGAGATACCAA
CCACAGGCGATGGACAATTTCATGTGACTGTTAGCGTGATTTTCTGTCTA
TTTTTTGTATCACTAGGGCTGGAAGATAATATCACGAGAGGATGGACAAC
ATATCACGCGAGGATGGACAACATAGCTTGAAAGCGCTCAACAAGTACCT
GGCCCTCGAGCTTCTGATAAAGCCCATTAAAATGTTAACATGATCCAATA
TTCTGCGGAATCTGAAGCCCATGGGCGGCTCCATTGACCCGCTTATTCTT
TCCATGGCCCCATGGTGATCAACAAGCATCTTGTGTTGTGTGAAAAGAAC
CCTCCCCTCCCCCTTAGCCTTGTTGCCTTTTTTCGATAAAACATGACTAA
AGAGTTTTATTTGTTGTTTTTGTTCTGCCCTTTTTGTTCTCTTCATTATG
AATCATGCTCTATAATTGATCCACACGCGTCGGAAATGCCCTCATCCGTC
AGATATCCTCAGTAAAATGAAATATTTTA back to topprotein sequence of jgi.p|Nanoce1779_2|653891 >mRNA_7614-protein ID=mRNA_7614-protein|Name=jgi.p|Nanoce1779_2|653891|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MTCARPMPPSQYRQVSQASMTDVSGTEASATACCTRTSPPLPPITTSPPL
ASQPAALPVIEEGAWVILQMGDGRNFFACAQSKGMMRLGRVNISLSGLIG
VPYGSVLEVHPDGLVPLPGTNELYEDLAVGDMDGNEFTRGGGPASVGEYD
GATSDNRDFTDTNTAQRMTMVEIEELKNSGASGHAIIQALASNSDTWDKK
TAFAKQKWTRKKAHKYVVRVRAVAGNGTNVVQALFVKSGLVKSTAIRPDS
IAQLLSYGNVSAGSRVLLFDSYSGVVLGSVLERLGGYGNVVNLFAGAQAH
MDHVKYFNLPKEHLARTLVHYPLTGLAEAERARRRRMEAGVEEEEEEGDK
RFLPTAEEEVKARASGKFVVYQKPVGVNERVEEGKIGKGEEEGDSFDRPK
WLKYLEKKRSRLRALAEGRRLLLEGTDCLIVACRHDPAVVVPRLLPFMQE
GAAFAVYCEFLEPLVALQDLLMDAGMLRLQLLSTWWREYQVMPGRSHPHM
NMSADGGCVLTGIKISDGDKICGGPSMEGVEAQEREAVGGNGNSRKRYRK
QR* back to topmRNA from alignment at scaffold_20:376840..379534- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7614 ID=mRNA_7614|Name=jgi.p|Nanoce1779_2|653891|organism=Nannochloropsis oceanica|type=mRNA|length=2695bp|location=Sequence derived from alignment at scaffold_20:376840..379534- (Nannochloropsis oceanica)
GAATTTGATGTCTTGCTGCCAATGAAAAGGTAAAAGTAAAGAGTACACCA
CGAGTCAAGAAAAAAATCGTTGGGCTTGTGTTTTCGCTGGAGGCTCATAT
CATGTGAGAAGGGAAATGAGTATGGAAAAAATGCCATAGTCACTCCGTGA
ATGTGACAGCCTATGTCAGCCAGAAGCAATCGGCAACTGCAGTCTCGATC
GTCATCAACGAATAGCCGGTCGGGGCCATGGCTTTCCATGCCTGCTGGAG
ACCATAAGCATGACATGTGCCCGCCCTATGCCACCGTCACAATACAGACA
AGTAAAGCATTTCTTTCAAGGTGTGGGAATCGGTGGTGAGCCCGTAGTTG
ACCAAAGACAAGGATTATCTCATCATCTACGCCCGACCTCCCCACCCCCA
GGCACCATTCAAATATCACCCCGTGCACCTAGACTCACAGCATCTTTCAA
CGCCTACCACAACACAGGTTTCGCAAGCAAGTATGACCGATGTCAGCGGC
ACCGAAGCTTCCGCAACCGCTTGTTGTACCCGCACATCTCCTCCTCTTCC
ACCCATTACAACCTCCCCTCCTCTGGCCTCACAACCAGCCGCACTTCCCG
TCATCGAAGAAGGCGCCTGGGTAATCCTGCAAATGGGAGATGGCCGAAAT
TTTTTTGCTTGCGCGCAGTCCAAGGGTATGATGCGTCTTGGTAGGGTTAA
TATCTCGCTCAGTGGATTGATAGGTGTGCCCTATGGCAGTGTCTTGGAGG
TCCACCCGGATGGTCTAGTCCCTCTGCCGGGTACGAACGAGCTCTACGAA
GACCTTGCCGTGGGCGACATGGACGGAAACGAATTCACCCGAGGAGGAGG
ACCTGCGAGCGTGGGGGAGTATGATGGTGCTACCTCGGATAACAGGGATT
TTACGGACACAAACACGGCGCAGCGCATGACCATGGTCGAGATTGAAGAG
CTCAAGAATAGTGGAGCATCTGGCCACGCGATCATTCAAGCCTTGGCTTC
GAATTCAGACACCTGGGACAAAAAAACGGCGTTCGCAAAGCAGAAGTGGA
CCAGGAAAAAGGCGCATAAATACGTCGTGCGCGTCAGAGCAGTAGCCGGG
AACGGGACAAATGTGGTGCAAGCCCTCTTTGTGAAGTCGGGCCTTGTTAA
GAGCACTGCCATCCGTCCAGACAGTATCGCCCAACTCCTCTCCTATGGCA
ATGTCTCCGCCGGCTCCCGTGTCTTGCTCTTCGATTCCTACTCGGGCGTG
GTGCTGGGCTCGGTCCTTGAGCGATTGGGAGGGTATGGAAATGTGGTGAA
TTTATTCGCGGGGGCTCAGGCTCATATGGACCATGTCAAGTATTTTAATT
TGCCCAAGGAACATTTGGCCAGGACGCTGGTCCATTATCCGTTAACGGGA
TTGGCAGAGGCGGAGAGGGCGAGGAGGAGGAGGATGGAGGCCGGGGTGGA
GGAGGAGGAGGAGGAGGGGGATAAGAGGTTCTTACCGACGGCCGAGGAGG
AGGTCAAGGCGCGGGCGTCGGGGAAGTTCGTCGTGTACCAGAAGCCAGTA
GGTGTGAATGAAAGGGTGGAGGAAGGGAAGATTGGCAAGGGAGAGGAAGA
AGGGGATAGCTTTGATCGACCCAAGTGGTTGAAGTACCTGGAGAAGAAGC
GGAGTCGTCTCCGGGCCTTAGCGGAGGGCAGGAGATTGTTGTTGGAAGGG
ACAGATTGCTTGATCGTAGCCTGTCGGCATGATCCGGCAGTTGTGGTGCC
GAGGTTGTTGCCTTTCATGCAGGAGGGGGCGGCGTTTGCAGTGTACTGTG
AGTTTTTGGAGCCCTTGGTCGCCTTGCAGGACTTGTTGATGGACGCGGGC
ATGCTGAGACTGCAGTTGCTGAGCACATGGTGGCGTGAGTATCAGGTTAT
GCCCGGCAGGTCACATCCGCATATGAACATGAGTGCGGATGGTGGGTGCG
TCTTGACGGGCATAAAGATAAGCGATGGCGATAAGATATGTGGGGGGCCC
TCGATGGAGGGAGTGGAGGCGCAGGAGCGGGAGGCGGTGGGGGGAAATGG
AAATTCTAGAAAGCGGTACCGGAAGCAGAGATGATTTTTGAATGAATGAA
ATACAGAAAAATTACTCGAGTGGATATGTGCCTGGCACTGTGTTTCTGGT
TGAGTGTGTCGTGGTTTTCTTTTCTGCTTAACCCCGGTTAGGAGGTTGGA
TTAGGCGAGATACCAACCACAGGCGATGGACAATTTCATGTGACTGTTAG
CGTGATTTTCTGTCTATTTTTTGTATCACTAGGGCTGGAAGATAATATCA
CGAGAGGATGGACAACATATCACGCGAGGATGGACAACATAGCTTGAAAG
CGCTCAACAAGTACCTGGCCCTCGAGCTTCTGATAAAGCCCATTAAAATG
TTAACATGATCCAATATTCTGCGGAATCTGAAGCCCATGGGCGGCTCCAT
TGACCCGCTTATTCTTTCCATGGCCCCATGGTGATCAACAAGCATCTTGT
GTTGTGTGAAAAGAACCCTCCCCTCCCCCTTAGCCTTGTTGCCTTTTTTC
GATAAAACATGACTAAAGAGTTTTATTTGTTGTTTTTGTTCTGCCCTTTT
TGTTCTCTTCATTATGAATCATGCTCTATAATTGATCCACACGCGTCGGA
AATGCCCTCATCCGTCAGATATCCTCAGTAAAATGAAATATTTTA back to topCoding sequence (CDS) from alignment at scaffold_20:376840..379534- >mRNA_7614 ID=mRNA_7614|Name=jgi.p|Nanoce1779_2|653891|organism=Nannochloropsis oceanica|type=CDS|length=3318bp|location=Sequence derived from alignment at scaffold_20:376840..379534- (Nannochloropsis oceanica)
GTTTCGCAAGCAAGTATGACCGATGTCAGCGGCACCGAAGCTTCCGCAAC
CGCTTGTTGTACCCGCACATCTCCTCCTCTTCCACCCATTACAACCTCCC
CTCCTCTGGCCTCACAACCAGCCGCACTTCCCGTCATCGAAGAAGGCGCC
TGGGTAATCCTGCAAATGGGAGATGGCCGAAATTTTTTTGCTTGCGCGCA
GTCCAAGGGTATGATGCGTCTTGGTAGGGTTAATATCTCGCTCAGTGGAT
TGATAGGTGTGCCCTATGGCAGTGTCTTGGAGGTCCACCCGGATGGTCTA
GTCCCTCTGCCGGGTACGAACGAGCTCTACGAAGACCTTGCCGTGGGCGA
CATGGACGGAAACGAATTCACCCGAGGAGGAGGACCTGCGAGCGTGGGGG
AGTATGATGGTGCTACCTCGGATAACAGGGATTTTACGGACACAAACACG
GCGCAGCGCATGACCATGGTCGAGATTGAAGAGCTCAAGAATAGTGGAGC
ATCTGGCCACGCGATCATTCAAGCCTTGGCTTCGAATTCAGACACCTGGG
ACAAAAAAACGGCGTTCGCAAAGCAGAAGTGGACCAGGAAAAAGGCGCAT
AAATACGTCGTGCGCGTCAGAGCAGTAGCCGGGAACGGGACAAATGTGGT
GCAAGCCCTCTTTGTGAAGTCGGGCCTTGTTAAGAGCACTGCCATCCGTC
CAGACAGTATCGCCCAACTCCTCTCCTATGGCAATGTCTCCGCCGGCTCC
CGTGTCTTGCTCTTCGATTCCTACTCGGGCGTGGTGCTGGGCTCGGTCCT
TGAGCGATTGGGAGGGTATGGAAATGTGGTGAATTTATTCGCGGGGGCTC
AGGCTCATATGGACCATGTCAAGTATTTTAATTTGCCCAAGGAACATTTG
GCCAGGACGCTGGTCCATTATCCGTTAACGGGATTGGCAGAGGCGGAGAG
GGCGAGGAGGAGGAGGATGGAGGCCGGGGTGGAGGAGGAGGAGGAGGAGG
GGGATAAGAGGTTCTTACCGACGGCCGAGGAGGAGGTCAAGGCGCGGGCG
TCGGGGAAGTTCGTCGTGTACCAGAAGCCAGTAGGTGTGAATGAAAGGGT
GGAGGAAGGGAAGATTGGCAAGGGAGAGGAAGAAGGGGATAGCTTTGATC
GACCCAAGTGGTTGAAGTACCTGGAGAAGAAGCGGAGTCGTCTCCGGGCC
TTAGCGGAGGGCAGGAGATTGTTGTTGGAAGGGACAGATTGCTTGATCGT
AGCCTGTCGGCATGATCCGGCAGTTGTGGTGCCGAGGTTGTTGCCTTTCA
TGCAGGAGGGGGCGGCGTTTGCAGTGTACTGTGAGTTTTTGGAGCCCTTG
GTCGCCTTGCAGGACTTGTTGATGGACGCGGGCATGCTGAGACTGCAGTT
GCTGAGCACATGGTGGCGTGAGTATCAGGTTATGCCCGGCAGGTCACATC
CGCATATGAACATGAGTGCGGATGGTGGGTGCGTCTTGACGGGCATAAAG
ATAAGCGATGGCGATAAGATATGTGGGGGGCCCTCGATGGAGGGAGTGGA
GGCGCAGGAGCGGGAGGCGGTGGGGGGAAATGGAAATTCTAGAAAGCGGT
ACCGGAAGCAGAGATGAATGACATGTGCCCGCCCTATGCCACCGTCACAA
TACAGACAAGTTTCGCAAGCAAGTATGACCGATGTCAGCGGCACCGAAGC
TTCCGCAACCGCTTGTTGTACCCGCACATCTCCTCCTCTTCCACCCATTA
CAACCTCCCCTCCTCTGGCCTCACAACCAGCCGCACTTCCCGTCATCGAA
GAAGGCGCCTGGGTAATCCTGCAAATGGGAGATGGCCGAAATTTTTTTGC
TTGCGCGCAGTCCAAGGGTATGATGCGTCTTGGTAGGGTTAATATCTCGC
TCAGTGGATTGATAGGTGTGCCCTATGGCAGTGTCTTGGAGGTCCACCCG
GATGGTCTAGTCCCTCTGCCGGGTACGAACGAGCTCTACGAAGACCTTGC
CGTGGGCGACATGGACGGAAACGAATTCACCCGAGGAGGAGGACCTGCGA
GCGTGGGGGAGTATGATGGTGCTACCTCGGATAACAGGGATTTTACGGAC
ACAAACACGGCGCAGCGCATGACCATGGTCGAGATTGAAGAGCTCAAGAA
TAGTGGAGCATCTGGCCACGCGATCATTCAAGCCTTGGCTTCGAATTCAG
ACACCTGGGACAAAAAAACGGCGTTCGCAAAGCAGAAGTGGACCAGGAAA
AAGGCGCATAAATACGTCGTGCGCGTCAGAGCAGTAGCCGGGAACGGGAC
AAATGTGGTGCAAGCCCTCTTTGTGAAGTCGGGCCTTGTTAAGAGCACTG
CCATCCGTCCAGACAGTATCGCCCAACTCCTCTCCTATGGCAATGTCTCC
GCCGGCTCCCGTGTCTTGCTCTTCGATTCCTACTCGGGCGTGGTGCTGGG
CTCGGTCCTTGAGCGATTGGGAGGGTATGGAAATGTGGTGAATTTATTCG
CGGGGGCTCAGGCTCATATGGACCATGTCAAGTATTTTAATTTGCCCAAG
GAACATTTGGCCAGGACGCTGGTCCATTATCCGTTAACGGGATTGGCAGA
GGCGGAGAGGGCGAGGAGGAGGAGGATGGAGGCCGGGGTGGAGGAGGAGG
AGGAGGAGGGGGATAAGAGGTTCTTACCGACGGCCGAGGAGGAGGTCAAG
GCGCGGGCGTCGGGGAAGTTCGTCGTGTACCAGAAGCCAGTAGGTGTGAA
TGAAAGGGTGGAGGAAGGGAAGATTGGCAAGGGAGAGGAAGAAGGGGATA
GCTTTGATCGACCCAAGTGGTTGAAGTACCTGGAGAAGAAGCGGAGTCGT
CTCCGGGCCTTAGCGGAGGGCAGGAGATTGTTGTTGGAAGGGACAGATTG
CTTGATCGTAGCCTGTCGGCATGATCCGGCAGTTGTGGTGCCGAGGTTGT
TGCCTTTCATGCAGGAGGGGGCGGCGTTTGCAGTGTACTGTGAGTTTTTG
GAGCCCTTGGTCGCCTTGCAGGACTTGTTGATGGACGCGGGCATGCTGAG
ACTGCAGTTGCTGAGCACATGGTGGCGTGAGTATCAGGTTATGCCCGGCA
GGTCACATCCGCATATGAACATGAGTGCGGATGGTGGGTGCGTCTTGACG
GGCATAAAGATAAGCGATGGCGATAAGATATGTGGGGGGCCCTCGATGGA
GGGAGTGGAGGCGCAGGAGCGGGAGGCGGTGGGGGGAAATGGAAATTCTA
GAAAGCGGTACCGGAAGCAGAGATGAATGACATGTGCCCGCCCTATGCCA
CCGTCACAATACAGACAA back to top
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