jgi.p|Nanoce1779_2|531518, mRNA_7613 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531518
Unique NamemRNA_7613
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length615
Alignment locationscaffold_20:375328..375942 -

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Properties
Property NameValue
TranscriptId531604
TrackFilteredModels2
ProteinId531518
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:375328..375942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531518gene_7613Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7613CDS_7613Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531518mRNA_7613-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7613 ID=mRNA_7613|Name=jgi.p|Nanoce1779_2|531518|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATGTCATCGACAGGATTTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCA
GAATGTGTATTGGGGGATGTTGGCTCGCCATATGTACCCCGATAGGAAGG
ACCATCAGGTATTCTTGCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCG
CGGGATACTCCATATTACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGG
ACAGGGGCGTGAGAATGAGGACACTACTCTTCTGGGCATGATTGAGCTCT
CCCTGCAACCCACTACTGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCC
CCCATTAAACACTTTCTCGCACTTCTCGGTTTTCCCGTCCATCCATATAT
CTCCAACCTTTTGGTCGACGCGAGTGTCCGAAGGCAAGGACATGCGGCTC
GTTTGGTGGCTCATGCCGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTG
ATCTTTTTGCACGCAGATGGTGACTACAGACCCGCAGTGAAGCTTTACGA
AACCTTGGGCTATAAAGGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAG
AGAGAAGGGGATGGGTGGAAAAATGGGTGGGGATGAAGTTGAGGTATTTT
CGGAAGGAGCTCTGA
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protein sequence of jgi.p|Nanoce1779_2|531518

>mRNA_7613-protein ID=mRNA_7613-protein|Name=jgi.p|Nanoce1779_2|531518|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSSTGFGEQVEAWWLRQNVYWGMLARHMYPDRKDHQVFLLLEEQGGRKSA
RDTPYYRKGKKMGEEEGQGRENEDTTLLGMIELSLQPTTGLPPPLLPLPP
PIKHFLALLGFPVHPYISNLLVDASVRRQGHAARLVAHAESVAREDGFNL
IFLHADGDYRPAVKLYETLGYKGGEEEGEEGGEERRGWVEKWVGMKLRYF
RKEL*
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mRNA from alignment at scaffold_20:375328..375942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7613 ID=mRNA_7613|Name=jgi.p|Nanoce1779_2|531518|organism=Nannochloropsis oceanica|type=mRNA|length=615bp|location=Sequence derived from alignment at scaffold_20:375328..375942- (Nannochloropsis oceanica)
ATGTCATCGACAGGATTTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCA
GAATGTGTATTGGGGGATGTTGGCTCGCCATATGTACCCCGATAGGAAGG
ACCATCAGGTATTCTTGCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCG
CGGGATACTCCATATTACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGG
ACAGGGGCGTGAGAATGAGGACACTACTCTTCTGGGCATGATTGAGCTCT
CCCTGCAACCCACTACTGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCC
CCCATTAAACACTTTCTCGCACTTCTCGGTTTTCCCGTCCATCCATATAT
CTCCAACCTTTTGGTCGACGCGAGTGTCCGAAGGCAAGGACATGCGGCTC
GTTTGGTGGCTCATGCCGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTG
ATCTTTTTGCACGCAGATGGTGACTACAGACCCGCAGTGAAGCTTTACGA
AACCTTGGGCTATAAAGGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAG
AGAGAAGGGGATGGGTGGAAAAATGGGTGGGGATGAAGTTGAGGTATTTT
CGGAAGGAGCTCTGA
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Coding sequence (CDS) from alignment at scaffold_20:375328..375942-

>mRNA_7613 ID=mRNA_7613|Name=jgi.p|Nanoce1779_2|531518|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_20:375328..375942- (Nannochloropsis oceanica)
ATGTCATCGACAGGATTTGGAGAGCAGGTGGAGGCATGGTGGCTGCGGCA
GAATGTGTATTGGGGGATGTTGGCTCGCCATATGTACCCCGATAGGAAGG
ACCATCAGGTATTCTTGCTTTTGGAAGAACAGGGAGGAAGAAAAAGTGCG
CGGGATACTCCATATTACAGGAAGGGCAAGAAGATGGGCGAGGAGGAGGG
ACAGGGGCGTGAGAATGAGGACACTACTCTTCTGGGCATGATTGAGCTCT
CCCTGCAACCCACTACTGGCCTCCCCCCGCCCCTCCTCCCCCTCCCTCCC
CCCATTAAACACTTTCTCGCACTTCTCGGTTTTCCCGTCCATCCATATAT
CTCCAACCTTTTGGTCGACGCGAGTGTCCGAAGGCAAGGACATGCGGCTC
GTTTGGTGGCTCATGCCGAGAGCGTGGCGCGTGAGGACGGGTTTAATCTG
ATCTTTTTGCACGCAGATGGTGACTACAGACCCGCAGTGAAGCTTTACGA
AACCTTGGGCTATAAAGGAGGAGAAGAGGAGGGAGAAGAGGGAGGGGAAG
AGAGAAGGGGATGGGTGGAAAAATGGGTGGGGATGAAGTTGAGGTATTTT
CGGAAGGAGCTCTGA
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Synonyms
Publications