jgi.p|Nanoce1779_2|558751, mRNA_7612 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558751
Unique Name	mRNA_7612
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1343
Alignment location	scaffold_20:373479..375137 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558837
Track	FilteredModels2
ProteinId	558751

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:373479..375137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558751	gene_7612	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558751	mRNA_7612-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7612	CDS_7612	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:373479..375137+
coding sequence from alignment at scaffold_20:373479..375137+

mRNA sequence

>mRNA_7612 ID=mRNA_7612|Name=jgi.p|Nanoce1779_2|558751|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
CAGGGCTTCGTCTTGAACCGACAGGCAGCGCTGAGCAGCATGCGTCCCCC
ACGCCCCCAGATCCGACAAGTCGGTGGCGGCAACTCTCCAGAGGAATGGT
TCAAAAGCCTGCCGCCCATCACCAGGGCTTACCTCATCGCCGCCTTCTTC
TCCACCATTTTTTCCCACTTTGGCATTGTTTCCCCAAGGAAATTGATTTG
GGATTGGGAAGGGCTGAAGAACTTTCAGCTCTGGCGCCTCATCACCCCCT
TCACCTTTTTCGGTGGCCTGGGGATGCCCTTCGTCATGCAGCTCTTCATG
CTCGTTCAGTACTCGAGCCGGTACGAGATTTCCCCCTTCAACACCGGAGG
GGGCGGGGGGTCGTCGGACTATGCGATGATGCTGATTTTCGGGGCCGGGG
CCTTGCACATCTTGAACCTGTACATGGGCAAGATGGTGTTGGGCTCGTGT
TTGGTCATGATGATCACCTACGTTTGGTCTTGCCGGGAGCCGCACTCGAT
GGTGTCATTCTGGGGGTTTACCTTGGAGGCGATGTACCTGCCGTGGGCCC
TGACCGCCCTCCAGTTTTTGATGAACGGCCAGCAGGGGCTGAGCGACCCC
CTGATGGGCATCGCTGTCGGTCATGTGTACTTCTTCTTGATCGACACCCT
GCCCGTGGAGTACGACTGGGACGTGCTCAAGACGCCCAACTTCCTGGTAG
ATGCATTCGAGGGGCCACCGGTCGGGCCAGGAGGAGGAGGAGGAGGAGGA
GCGATGGCGGGGGGCGTGAGGGTTGGGGCGGGGGGGGGAGTAGGAGGAGC
GGGAGGAGCAGCAGGATGGACGGGGGGGGGGGGGGAGGGTGTTGGGGAGT
CAGTAGGAAGGTGGAGGGGCTGGAAGCAGGGGGGGGCGAGGGAGGAGCGA
TGTATACATACGACGAGAAGGATGGGGAAGAAATCAGGGAGAGAGGGAGA
GCTGATTGAGCAGCCGAGGGGGAGTGGGCGTTTTCTGTCGTCGCACATCC
TGACTGCGGTCCGCAGAGAAAAGAAAGTAACTATTGCGAAACGGGACGTG
AAATGAAGGCCACGCGTAAGTTATCGCCTCTCTGTACCCAGCCACCCCTT
TTGCCCTTGCCCTTCATAGGACGGCAAACACGAACGAAGGTAGAGTAAGA
GGGCAGTAAATGGAAAGAAACGTAGTCAGGCGATACGCCTCCGAAAGATT
GAAGAAGGGCTCTCTCGCGTCGGGAAAAAGCTAGCCAACTCGCTCTCACA
AGGGCTGTGGTCCGTTCAAGGCTCATCCCTCTTCATCGCTTCCTGACGCC
AGCGCTTACATCGACATACAAAAACGACCTTACCATATGTTAT

protein sequence of jgi.p|Nanoce1779_2|558751

>mRNA_7612-protein ID=mRNA_7612-protein|Name=jgi.p|Nanoce1779_2|558751|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MRPPRPQIRQVGGGNSPEEWFKSLPPITRAYLIAAFFSTIFSHFGIVSPR
KLIWDWEGLKNFQLWRLITPFTFFGGLGMPFVMQLFMLVQYSSRYEISPF
NTGGGGGSSDYAMMLIFGAGALHILNLYMGKMVLGSCLVMMITYVWSCRE
PHSMVSFWGFTLEAMYLPWALTALQFLMNGQQGLSDPLMGIAVGHVYFFL
IDTLPVEYDWDVLKTPNFLVDAFEGPPVGPGGGGGGGAMAGGVRVGAGGG
VGGAGGAAGWTGGGGEGVGESVGRWRGWKQGGAREERCIHTTRRMGKKSG
REGELIEQPRGSGRFLSSHILTAVRREKKVTIAKRDVK*

mRNA from alignment at scaffold_20:373479..375137+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7612 ID=mRNA_7612|Name=jgi.p|Nanoce1779_2|558751|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at scaffold_20:373479..375137+ (Nannochloropsis oceanica)
CAGGGCTTCGTCTTGAACCGACAGGCAGCGCTGAGCAGCATGCGTCCCCC
ACGCCCCCAGATCCGACAAGTCGGTGGCGGCAACTCTCCAGGTACGTTTT
TTGTGGTGCGTAGGGACTTAAGTTGGTCCGCACATCATTGATACCGTTTC
CCTTGACCCGCCTCGTCTCTTCTCCCGTCCCTTCTCCTTTTCTCTCTCCC
CAAATCAGAGGAATGGTTCAAAAGCCTGCCGCCCATCACCAGGGCTTACC
TCATCGCCGCCTTCTTCTCCACCATTTTTTCCCACTTTGGCATTGTTTCC
CCAAGGAAATTGATTTGGGATTGGGAAGGGCTGAAGAACTTTCAGGTTGG
AGGAGAGGCCGGACGGGAGGGGGGGATGGAAGTTTGACGAGGGGTCGTGC
GGGTGCGCGGCATGGGGTATTGCTAGGCCAGCGAAGAAAGGGATGAGGTT
CATTTTAGGGAGGAAATCACCGCTTGTATATTTACGCTTATGCAACGTTT
CTCGGTCGTCCCCTTTTCCCTCTTCCTACCTCCTCCTCATACAGCTCTGG
CGCCTCATCACCCCCTTCACCTTTTTCGGTGGCCTGGGGATGCCCTTCGT
CATGCAGCTCTTCATGCTCGTTCAGTACTCGAGCCGGTACGAGATTTCCC
CCTTCAACACCGGAGGGGGCGGGGGGTCGTCGGACTATGCGATGATGCTG
ATTTTCGGGGCCGGGGCCTTGCACATCTTGAACCTGTACATGGGCAAGAT
GGTGTTGGGCTCGTGTTTGGTCATGATGATCACCTACGTTTGGTCTTGCC
GGGAGCCGCACTCGATGGTGTCATTCTGGGGGTTTACCTTGGAGGCGATG
TACCTGCCGTGGGCCCTGACCGCCCTCCAGTTTTTGATGAACGGCCAGCA
GGGGCTGAGCGACCCCCTGATGGGCATCGCTGTCGGTCATGTGTACTTCT
TCTTGATCGACACCCTGCCCGTGGAGTACGACTGGGACGTGCTCAAGACG
CCCAACTTCCTGGTAGATGCATTCGAGGGGCCACCGGTCGGGCCAGGAGG
AGGAGGAGGAGGAGGAGCGATGGCGGGGGGCGTGAGGGTTGGGGCGGGGG
GGGGAGTAGGAGGAGCGGGAGGAGCAGCAGGATGGACGGGGGGGGGGGGG
GAGGGTGTTGGGGAGTCAGTAGGAAGGTGGAGGGGCTGGAAGCAGGGGGG
GGCGAGGGAGGAGCGATGTATACATACGACGAGAAGGATGGGGAAGAAAT
CAGGGAGAGAGGGAGAGCTGATTGAGCAGCCGAGGGGGAGTGGGCGTTTT
CTGTCGTCGCACATCCTGACTGCGGTCCGCAGAGAAAAGAAAGTAACTAT
TGCGAAACGGGACGTGAAATGAAGGCCACGCGTAAGTTATCGCCTCTCTG
TACCCAGCCACCCCTTTTGCCCTTGCCCTTCATAGGACGGCAAACACGAA
CGAAGGTAGAGTAAGAGGGCAGTAAATGGAAAGAAACGTAGTCAGGCGAT
ACGCCTCCGAAAGATTGAAGAAGGGCTCTCTCGCGTCGGGAAAAAGCTAG
CCAACTCGCTCTCACAAGGGCTGTGGTCCGTTCAAGGCTCATCCCTCTTC
ATCGCTTCCTGACGCCAGCGCTTACATCGACATACAAAAACGACCTTACC
ATATGTTAT

Coding sequence (CDS) from alignment at scaffold_20:373479..375137+

>mRNA_7612 ID=mRNA_7612|Name=jgi.p|Nanoce1779_2|558751|organism=Nannochloropsis oceanica|type=CDS|length=3051bp|location=Sequence derived from alignment at scaffold_20:373479..375137+ (Nannochloropsis oceanica)
ATGCGTCCCCCACGCCCCCAGATCCGACAAGTCGGTGGCGGCAACTCTCC
AGAGGAATGGTTCAAAAGCCTGCCGCCCATCACCAGGGCTTACCTCATCG
CCGCCTTCTTCTCCACCATTTTTTCCCACTTTGGCATTGTTTCCCCAAGG
AAATTGATTTGGGATTGGGAAGGGCTGAAGAACTTTCAGCTCTGGCGCCT
CATCACCCCCTTCACCTTTTTCGGTGGCCTGGGGATGCCCTTCGTCATGC
AGCTCTTCATGCTCGTTCAGTACTCGAGCCGGTACGAGATTTCCCCCTTC
AACACCGGAGGGGGCGGGGGGTCGTCGGACTATGCGATGATGCTGATTTT
CGGGGCCGGGGCCTTGCACATCTTGAACCTGTACATGGGCAAGATGGTGT
TGGGCTCGTGTTTGGTCATGATGATCACCTACGTTTGGTCTTGCCGGGAG
CCGCACTCGATGGTGTCATTCTGGGGGTTTACCTTGGAGGCGATGTACCT
GCCGTGGGCCCTGACCGCCCTCCAGTTTTTGATGAACGGCCAGCAGGGGC
TGAGCGACCCCCTGATGGGCATCGCTGTCGGTCATGTGTACTTCTTCTTG
ATCGACACCCTGCCCGTGGAGTACGACTGGGACGTGCTCAAGACGCCCAA
CTTCCTGGTAGATGCATTCGAGGGGCCACCGGTCGGGCCAGGAGGAGGAG
GAGGAGGAGGAGCGATGGCGGGGGGCGTGAGGGTTGGGGCGGGGGGGGGA
GTAGGAGGAGCGGGAGGAGCAGCAGGATGGACGGGGGGGGGGGGGGAGGG
TGTTGGGGAGTCAGTAGGAAGGTGGAGGGGCTGGAAGCAGGGGGGGGCGA
GGGAGGAGCGATGTATACATACGACGAGAAGGATGGGGAAGAAATCAGGG
AGAGAGGGAGAGCTGATTGAGCAGCCGAGGGGGAGTGGGCGTTTTCTGTC
GTCGCACATCCTGACTGCGGTCCGCAGAGAAAAGAAAGTAACTATTGCGA
AACGGGACGTGAAATGAATGCGTCCCCCACGCCCCCAGATCCGACAAGTC
GGTGGCGGCAACTCTCCAGAGGAATGGTTCAAAAGCCTGCCGCCCATCAC
CAGGGCTTACCTCATCGCCGCCTTCTTCTCCACCATTTTTTCCCACTTTG
GCATTGTTTCCCCAAGGAAATTGATTTGGGATTGGGAAGGGCTGAAGAAC
TTTCAGCTCTGGCGCCTCATCACCCCCTTCACCTTTTTCGGTGGCCTGGG
GATGCCCTTCGTCATGCAGCTCTTCATGCTCGTTCAGTACTCGAGCCGGT
ACGAGATTTCCCCCTTCAACACCGGAGGGGGCGGGGGGTCGTCGGACTAT
GCGATGATGCTGATTTTCGGGGCCGGGGCCTTGCACATCTTGAACCTGTA
CATGGGCAAGATGGTGTTGGGCTCGTGTTTGGTCATGATGATCACCTACG
TTTGGTCTTGCCGGGAGCCGCACTCGATGGTGTCATTCTGGGGGTTTACC
TTGGAGGCGATGTACCTGCCGTGGGCCCTGACCGCCCTCCAGTTTTTGAT
GAACGGCCAGCAGGGGCTGAGCGACCCCCTGATGGGCATCGCTGTCGGTC
ATGTGTACTTCTTCTTGATCGACACCCTGCCCGTGGAGTACGACTGGGAC
GTGCTCAAGACGCCCAACTTCCTGGTAGATGCATTCGAGGGGCCACCGGT
CGGGCCAGGAGGAGGAGGAGGAGGAGGAGCGATGGCGGGGGGCGTGAGGG
TTGGGGCGGGGGGGGGAGTAGGAGGAGCGGGAGGAGCAGCAGGATGGACG
GGGGGGGGGGGGGAGGGTGTTGGGGAGTCAGTAGGAAGGTGGAGGGGCTG
GAAGCAGGGGGGGGCGAGGGAGGAGCGATGTATACATACGACGAGAAGGA
TGGGGAAGAAATCAGGGAGAGAGGGAGAGCTGATTGAGCAGCCGAGGGGG
AGTGGGCGTTTTCTGTCGTCGCACATCCTGACTGCGGTCCGCAGAGAAAA
GAAAGTAACTATTGCGAAACGGGACGTGAAATGAATGCGTCCCCCACGCC
CCCAGATCCGACAAGTCGGTGGCGGCAACTCTCCAGAGGAATGGTTCAAA
AGCCTGCCGCCCATCACCAGGGCTTACCTCATCGCCGCCTTCTTCTCCAC
CATTTTTTCCCACTTTGGCATTGTTTCCCCAAGGAAATTGATTTGGGATT
GGGAAGGGCTGAAGAACTTTCAGCTCTGGCGCCTCATCACCCCCTTCACC
TTTTTCGGTGGCCTGGGGATGCCCTTCGTCATGCAGCTCTTCATGCTCGT
TCAGTACTCGAGCCGGTACGAGATTTCCCCCTTCAACACCGGAGGGGGCG
GGGGGTCGTCGGACTATGCGATGATGCTGATTTTCGGGGCCGGGGCCTTG
CACATCTTGAACCTGTACATGGGCAAGATGGTGTTGGGCTCGTGTTTGGT
CATGATGATCACCTACGTTTGGTCTTGCCGGGAGCCGCACTCGATGGTGT
CATTCTGGGGGTTTACCTTGGAGGCGATGTACCTGCCGTGGGCCCTGACC
GCCCTCCAGTTTTTGATGAACGGCCAGCAGGGGCTGAGCGACCCCCTGAT
GGGCATCGCTGTCGGTCATGTGTACTTCTTCTTGATCGACACCCTGCCCG
TGGAGTACGACTGGGACGTGCTCAAGACGCCCAACTTCCTGGTAGATGCA
TTCGAGGGGCCACCGGTCGGGCCAGGAGGAGGAGGAGGAGGAGGAGCGAT
GGCGGGGGGCGTGAGGGTTGGGGCGGGGGGGGGAGTAGGAGGAGCGGGAG
GAGCAGCAGGATGGACGGGGGGGGGGGGGGAGGGTGTTGGGGAGTCAGTA
GGAAGGTGGAGGGGCTGGAAGCAGGGGGGGGCGAGGGAGGAGCGATGTAT
ACATACGACGAGAAGGATGGGGAAGAAATCAGGGAGAGAGGGAGAGCTGA
TTGAGCAGCCGAGGGGGAGTGGGCGTTTTCTGTCGTCGCACATCCTGACT
GCGGTCCGCAGAGAAAAGAAAGTAACTATTGCGAAACGGGACGTGAAATG
A

Synonyms

Publications