jgi.p|Nanoce1779_2|599350, mRNA_7611 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599350
Unique NamemRNA_7611
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1399
Alignment locationscaffold_20:370846..372630 -

Link to JBrowse

Properties
Property NameValue
TranscriptId599436
TrackFilteredModels2
ProteinId599350
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:370846..372630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599350gene_7611Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599350mRNA_7611-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7611CDS_7611Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7611 ID=mRNA_7611|Name=jgi.p|Nanoce1779_2|599350|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp
ACAGGACCTCTTCCCTTCCATAATAACTATGAAGACCGCCGCGATTTTGG
CGGTTCTGGCTTGCGCCGCCAACGCCTTCGTCTTCCCCACGCCCAAGGTC
TCCCAGGTAAGGATTGGGAGAGAGGGAAAGAAGGACCGAAGAAGTGTATT
TGAGTCAGTTTCCTTGAGCAAACATGTCAATAAGAGGCCGGCACTATTCT
TTTCAGTGTCTCTTCATACGGGCCCCTGTCCAATGTTTTGAATGGTACGT
AGACAAACCTTGCTTTGATCTAAGAGCAAGGTACCATTCTCATTGCCATT
TTTGACTGCGACATGAACTGCTTGTGCATGTTTGAATAGTCGAGGTCTTC
CTTATGCACGAGTGCAGAATTTTAAATGTGTATCTCACCGCGATCCCTCG
CTCCTCTCCTTCCCCACATTTACTAAACACACAGACCGTCGTCAGAGGCA
CACCCTTCGACACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCC
ATGGCGGGAAAGAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCG
ATATCCTGCGGTCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGC
GATGGAATGGACGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACG
GGGTATGCGCAGGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAA
GGAGTGGGGCACGTGGGTCATCGTCAGTACGACTAATGGGGAACAGGTCA
CGATCCCCGCTGCCCGTGCTGCTATTGCCATTGGACACCTGCACTTCGGC
GCAGTTGGCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAAGGACAGGCT
TCTGTTGGAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCTTGTTCCCTG
CCCTTCGCCCGGGCTTGACCAAGGAAGCCGAGATGCTCAACGGTCGCGTG
GCCATGCTCGGCCTCGTGGCCCTCGTTGCCGTTTCCGCCGCCACGGGCCA
GGACATCCTCTCGGTCATTGACCAGGGCCTCGGTGGCCTGCTCCTCAAGG
CGTAATTCACTCTATACAATTTCAGAAGTGATCAGTACAACAATGAGTGG
ACTAGTATTTGTGAGTGTCAGTGTCTTTCTCCAGTCCCTTGCCCCTCTAA
TCATAATCGGTCCTTTTATTGGGCTTGTCAAGGCATTGAGTTGGATCGGG
CGGGCAAGGTGCCTCTTGTTGCTTGCCTTGTCTTGGCCCCTTTCCTTACC
CTCCAGAGCAGTAGCAGCGTCCTTAATTTCTTCCGTCGAATTTAGACGGC
GATTTAGTCTGCAGGAGAAAGAAATAAAATGAAAGATCGATCGATAGGAG
AGTACGCAAACATCAAACGAGTAAAGTGAAAGGCTACACAGAGCACGTA
back to top

protein sequence of jgi.p|Nanoce1779_2|599350

>mRNA_7611-protein ID=mRNA_7611-protein|Name=jgi.p|Nanoce1779_2|599350|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MHECRILNVYLTAIPRSSPSPHLLNTQTVVRGTPFDTVSKDELAVENKAM
AGKSVFERAMADFNGRYPAVAALGLGPSAKAERWNGRHAMFGWIVLLATG
YAQAHGLLPEGGMDAKEWGTWVIVSTTNGEQVTIPAARAAIAIGHLHFGA
VGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKEAEMLNGRVA
MLGLVALVAVSAATGQDILSVIDQGLGGLLLKA*
back to top

mRNA from alignment at scaffold_20:370846..372630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7611 ID=mRNA_7611|Name=jgi.p|Nanoce1779_2|599350|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at scaffold_20:370846..372630- (Nannochloropsis oceanica)
ACAGGACCTCTTCCCTTCCATAATAACTATGAAGACCGCCGCGATTTTGG
CGGTTCTGGCTTGCGCCGCCAACGCCTTCGTCTTCCCCACGCCCAAGGTC
TCCCAGGTAAGGATTGGGAGAGAGGGAAAGAAGGACCGAAGAAGTGTATT
TGAGTCAGTTTCCTTGAGCAAACATGTCAATAAGAGGCCGGCACTATTCT
TTTCAGTGTCTCTTCATACGGGCCCCTGTCCAATGTTTTGAATGGTACGT
AGACAAACCTTGCTTTGATCTAAGAGCAAGGTACCATTCTCATTGCCATT
TTTGACTGCGACATGAACTGCTTGTGCATGTTTGAATAGTCGAGGTCTTC
CTTATGCACGAGTGCAGAATTTTAAATGTGTATCTCACCGCGATCCCTCG
CTCCTCTCCTTCCCCACATTTACTAAACACACAGACCGTCGTCAGAGGCA
CACCCTTCGACACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCC
ATGGCGGGAAAGAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCG
ATATCCTGCGGTCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGC
GATGGAATGGACGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACG
GGGTATGCGCAGGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAA
GGAGTGGGGCACGGTGAGCTTCATTATAGGGGGAGAATGAGGTGATAGTG
TTTGCTTTCTGGTGTGCGAGGGTTTTGCTGCTGATTGCCGTAGGGGGGGT
ATCACACTCCTCCCCAACGCAAGGCACTCGTATAGTAAACACATCAGAAT
TAGTAACTGGATCGTCCTTCATGACTAAATCATCATTTGTACCATACATA
CAACCACCTCAACTAAAACTAGTGGGTCATCGTCAGTACGACTAATGGGG
AACAGGTCACGATCCCCGCTGCCCGTGCTGCTATTGCCATTGGACACCTG
CACTTCGGCGCAGTTGGCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAA
GGACAGGCTTCTGTTGGAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCT
TGTTCCCTGCCCTTCGCCCGGGCTTGACCAAGGAAGCCGAGATGCTCAAC
GGTGAGTAAACGACTAGCTGCATGCATCAGTTATGTCAATGGAAAGATGG
CAACCTGTCGGGGGAAAGACGAAGAGTCAAACACACTTAAGGCACCTGAA
ACGTACTCATTCATTTCAAGGCACCTGGAACGTACTCATTCATGTCCCCG
TTCTTGCTCCCTCTCTCCCGTTCCCCAGGTCGCGTGGCCATGCTCGGCCT
CGTGGCCCTCGTTGCCGTTTCCGCCGCCACGGGCCAGGACATCCTCTCGG
TCATTGACCAGGGCCTCGGTGGCCTGCTCCTCAAGGCGTAATTCACTCTA
TACAATTTCAGAAGTGATCAGTACAACAATGAGTGGACTAGTATTTGTGA
GTGTCAGTGTCTTTCTCCAGTCCCTTGCCCCTCTAATCATAATCGGTCCT
TTTATTGGGCTTGTCAAGGCATTGAGTTGGATCGGGCGGGCAAGGTGCCT
CTTGTTGCTTGCCTTGTCTTGGCCCCTTTCCTTACCCTCCAGAGCAGTAG
CAGCGTCCTTAATTTCTTCCGTCGAATTTAGACGGCGATTTAGTCTGCAG
GAGAAAGAAATAAAATGAAAGATCGATCGATAGGAGAGTACGCAAACATC
AAACGAGTAAAGTGAAAGGCTACACAGAGCACGTA
back to top

Coding sequence (CDS) from alignment at scaffold_20:370846..372630-

>mRNA_7611 ID=mRNA_7611|Name=jgi.p|Nanoce1779_2|599350|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_20:370846..372630- (Nannochloropsis oceanica)
GTCGCGTGGCCATGCTCGGCCTCGTGGCCCTCGTTGCCGTTTCCGCCGCC
ACGGGCCAGGACATCCTCTCGGTCATTGACCAGGGCCTCGGTGGCCTGCT
CCTCAAGGCGTAATGGGTCATCGTCAGTACGACTAATGGGGAACAGGTCA
CGATCCCCGCTGCCCGTGCTGCTATTGCCATTGGACACCTGCACTTCGGC
GCAGTTGGCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAAGGACAGGCT
TCTGTTGGAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCTTGTTCCCTG
CCCTTCGCCCGGGCTTGACCAAGGAAGCCGAGATGCTCAACGATGCACGA
GTGCAGAATTTTAAATGTGTATCTCACCGCGATCCCTCGCTCCTCTCCTT
CCCCACATTTACTAAACACACAGACCGTCGTCAGAGGCACACCCTTCGAC
ACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCCATGGCGGGAAA
GAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCGATATCCTGCGG
TCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGCGATGGAATGGA
CGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACGGGGTATGCGCA
GGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAAGGAGTGGGGCA
CGGTCGCGTGGCCATGCTCGGCCTCGTGGCCCTCGTTGCCGTTTCCGCCG
CCACGGGCCAGGACATCCTCTCGGTCATTGACCAGGGCCTCGGTGGCCTG
CTCCTCAAGGCGTAATGGGTCATCGTCAGTACGACTAATGGGGAACAGGT
CACGATCCCCGCTGCCCGTGCTGCTATTGCCATTGGACACCTGCACTTCG
GCGCAGTTGGCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAAGGACAGG
CTTCTGTTGGAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCTTGTTCCC
TGCCCTTCGCCCGGGCTTGACCAAGGAAGCCGAGATGCTCAACGATGCAC
GAGTGCAGAATTTTAAATGTGTATCTCACCGCGATCCCTCGCTCCTCTCC
TTCCCCACATTTACTAAACACACAGACCGTCGTCAGAGGCACACCCTTCG
ACACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCCATGGCGGGA
AAGAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCGATATCCTGC
GGTCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGCGATGGAATG
GACGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACGGGGTATGCG
CAGGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAAGGAGTGGGG
CACGGTCGCGTGGCCATGCTCGGCCTCGTGGCCCTCGTTGCCGTTTCCGC
CGCCACGGGCCAGGACATCCTCTCGGTCATTGACCAGGGCCTCGGTGGCC
TGCTCCTCAAGGCGTAATGGGTCATCGTCAGTACGACTAATGGGGAACAG
GTCACGATCCCCGCTGCCCGTGCTGCTATTGCCATTGGACACCTGCACTT
CGGCGCAGTTGGCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAAGGACA
GGCTTCTGTTGGAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCTTGTTC
CCTGCCCTTCGCCCGGGCTTGACCAAGGAAGCCGAGATGCTCAACGATGC
ACGAGTGCAGAATTTTAAATGTGTATCTCACCGCGATCCCTCGCTCCTCT
CCTTCCCCACATTTACTAAACACACAGACCGTCGTCAGAGGCACACCCTT
CGACACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCCATGGCGG
GAAAGAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCGATATCCT
GCGGTCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGCGATGGAA
TGGACGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACGGGGTATG
CGCAGGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAAGGAGTGG
GGCACG
back to top
Synonyms
Publications