jgi.p|Nanoce1779_2|599347, mRNA_7610 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599347
Unique Name	mRNA_7610
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1840
Alignment location	scaffold_20:368989..370828 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599433
Track	FilteredModels2
ProteinId	599347

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:368989..370828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599347	gene_7610	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599347	mRNA_7610-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7610	CDS_7610	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:368989..370828+
coding sequence from alignment at scaffold_20:368989..370828+

mRNA sequence

>mRNA_7610 ID=mRNA_7610|Name=jgi.p|Nanoce1779_2|599347|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp
TTCTTGGGTTTTATTTGTGAGAACGTGTGTTGTGTTGAGGAGTATTAGTG
AAGACTTGCTTGTGAGGAGGCGGTCACAGTTCTTGGGTTTTATTTGTGAG
AATGTGTGTTGTGTTGAGGAGTATTAGTGAAGACTTGCTTGTGAGGAGGC
GGTCACAGTTCTTATGTTTTATTTGTGGATATGATGGGATGCGAGGATTG
AGACGGTGGCTTGGAGCAAGAGCAAAAAGACCTGCCGGTAAGCGGAATGG
GTGAACTTGCTGCCTTTACTTGCCAGGGGGAGTCGAGACCGCGGGAGGTT
GTTGGCATGATGGAGCGCGATTTGTTTCTCAACATTCAGTTCCCCCGTCC
AGCAAGTCAGTGGCCGTATACGTATTCATCAGCTTTTGGGCCAAACAACA
CGATTTTTTGATGCACTCACGGAAAGAATGAACTCACCTCGCCTAACTCA
GCCGGACGATCAACAAGCAGCAACCCACTCGATCACGCCACAATGTCATA
AACTCATCACTCACAGGCTACACGTCGCCCTCCTTCTGGGAAAGCGACTT
TTATTACCATTCTTTCTTCCAACCTCGTCTTCTTTCCACCGGCGATCGTC
GTGATTTCGATCCTCACGATCAGGACAGCTATCGCTGCCTTCCCTACCAC
GCACCGTCTCACGTCTCGCTTCCTCCGTCCGCCACGTAACATCATGAAAC
GATACGTCGGCAGCAGCCATAGCAGCAGCATCAGCAGCGTAGCTAACCCC
TCCTCGCCGGACAACAACATGAAGCGTGCGAAAGTCGGCCTCCTCTCCAC
GAATTTCTTGCGCGTTTGTTCGTACAACGTGGATGGGCTCGATGACCTCA
ACATCTCGGATCGCGCAAACGAAGTGTGCTCCATCCTACTCCAAGAAGAA
CCGGACGGATTCTTGCCTGATGTCATTTTGCTGCAGGAAATCGTGCAAGC
AAATTTCCCGGTCTTTGTCTCCCGCCTTTGCTCCGCCGGGTACGTCCTCG
CCCCTTCGTCCATCCCCGAAGACAACGAATACTTTACCTTAGCCTTCTTC
AACGGAGCTCGCATTCAAATCACACGTTCGATGCGCACGCCCTTTTCCGG
GTCGAATATGGGGCGGGATTTGATAAAGGTGGAGGGACGGCTGGCACTTG
GTGCTGCTGACGAAACCCCTTTCTCCTCAGCCTCTTCTCGTGAGTTTCTT
TTCATGACTTCCCACTTCGAGTCCTTGGGTCCTGGGTCCACGGAACGCTG
CCGGCAGCTTACGCAAATCTTAGACAATCTCCTCTCCTTCCCTGGCCCTG
CCCTTTTTGCCGGCGACACCAACCTGAGAGAGGGGGAGGTGAAAGCCTGT
GAGCAGTATAAGAAAGTGGTGGACGCCTGGATGGCTGCTGGGAGTCCGGC
CGCCGAAAAAGTGACGTGGGATATGTCGATAAATGACAACTTGAAGATGG
ATGGTGCTTCTTTCTTGCCTCGAATGAGGTTGGACAGGCTATTGCTCAAT
TGGAAGTGGGGCGGGATAGGGACGACGACGGCTTCAACGACAGCAGCAGA
CTCGAATAAAGGATGCGGAGGGGGAAAGGGCAAAAAGAAAGCGGCGGAGA
CGGTGAAGGAACGGACGGAATTAGTGAGGCAGTGGAAGTTGCTTGGGAAG
GCGCGCATGGCTGACGGTAGGTTCCCCTCGGATCACTTTGGGATTTCGTG
CCTGGTACGCTTGCCGGCATCTGGTGTATGACGAGGGTGAGTTCTATCCA
GTCAGTCAGAAAGAAAGTGAGCTGGCGAATAGTGAAAGTGTAGAAGCGAA
AGACATAGAAGAGAAAAAAAGGAAGAAAAACAAGATGAGG

protein sequence of jgi.p|Nanoce1779_2|599347

>mRNA_7610-protein ID=mRNA_7610-protein|Name=jgi.p|Nanoce1779_2|599347|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MKRYVGSSHSSSISSVANPSSPDNNMKRAKVGLLSTNFLRVCSYNVDGLD
DLNISDRANEVCSILLQEEPDGFLPDVILLQEIVQANFPVFVSRLCSAGY
VLAPSSIPEDNEYFTLAFFNGARIQITRSMRTPFSGSNMGRDLIKVEGRL
ALGAADETPFSSASSREFLFMTSHFESLGPGSTERCRQLTQILDNLLSFP
GPALFAGDTNLREGEVKACEQYKKVVDAWMAAGSPAAEKVTWDMSINDNL
KMDGASFLPRMRLDRLLLNWKWGGIGTTTASTTAADSNKGCGGGKGKKKA
AETVKERTELVRQWKLLGKARMADGRFPSDHFGISCLVRLPASGV*

mRNA from alignment at scaffold_20:368989..370828+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7610 ID=mRNA_7610|Name=jgi.p|Nanoce1779_2|599347|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp|location=Sequence derived from alignment at scaffold_20:368989..370828+ (Nannochloropsis oceanica)
TTCTTGGGTTTTATTTGTGAGAACGTGTGTTGTGTTGAGGAGTATTAGTG
AAGACTTGCTTGTGAGGAGGCGGTCACAGTTCTTGGGTTTTATTTGTGAG
AATGTGTGTTGTGTTGAGGAGTATTAGTGAAGACTTGCTTGTGAGGAGGC
GGTCACAGTTCTTATGTTTTATTTGTGGATATGATGGGATGCGAGGATTG
AGACGGTGGCTTGGAGCAAGAGCAAAAAGACCTGCCGGTAAGCGGAATGG
GTGAACTTGCTGCCTTTACTTGCCAGGGGGAGTCGAGACCGCGGGAGGTT
GTTGGCATGATGGAGCGCGATTTGTTTCTCAACATTCAGTTCCCCCGTCC
AGCAAGTCAGTGGCCGTATACGTATTCATCAGCTTTTGGGCCAAACAACA
CGATTTTTTGATGCACTCACGGAAAGAATGAACTCACCTCGCCTAACTCA
GCCGGACGATCAACAAGCAGCAACCCACTCGATCACGCCACAATGTCATA
AACTCATCACTCACAGGCTACACGTCGCCCTCCTTCTGGGAAAGCGACTT
TTATTACCATTCTTTCTTCCAACCTCGTCTTCTTTCCACCGGCGATCGTC
GTGATTTCGATCCTCACGATCAGGACAGCTATCGCTGCCTTCCCTACCAC
GCACCGTCTCACGTCTCGCTTCCTCCGTCCGCCACGTAACATCATGAAAC
GATACGTCGGCAGCAGCCATAGCAGCAGCATCAGCAGCGTAGCTAACCCC
TCCTCGCCGGACAACAACATGAAGCGTGCGAAAGTCGGCCTCCTCTCCAC
GAATTTCTTGCGCGTTTGTTCGTACAACGTGGATGGGCTCGATGACCTCA
ACATCTCGGATCGCGCAAACGAAGTGTGCTCCATCCTACTCCAAGAAGAA
CCGGACGGATTCTTGCCTGATGTCATTTTGCTGCAGGAAATCGTGCAAGC
AAATTTCCCGGTCTTTGTCTCCCGCCTTTGCTCCGCCGGGTACGTCCTCG
CCCCTTCGTCCATCCCCGAAGACAACGAATACTTTACCTTAGCCTTCTTC
AACGGAGCTCGCATTCAAATCACACGTTCGATGCGCACGCCCTTTTCCGG
GTCGAATATGGGGCGGGATTTGATAAAGGTGGAGGGACGGCTGGCACTTG
GTGCTGCTGACGAAACCCCTTTCTCCTCAGCCTCTTCTCGTGAGTTTCTT
TTCATGACTTCCCACTTCGAGTCCTTGGGTCCTGGGTCCACGGAACGCTG
CCGGCAGCTTACGCAAATCTTAGACAATCTCCTCTCCTTCCCTGGCCCTG
CCCTTTTTGCCGGCGACACCAACCTGAGAGAGGGGGAGGTGAAAGCCTGT
GAGCAGTATAAGAAAGTGGTGGACGCCTGGATGGCTGCTGGGAGTCCGGC
CGCCGAAAAAGTGACGTGGGATATGTCGATAAATGACAACTTGAAGATGG
ATGGTGCTTCTTTCTTGCCTCGAATGAGGTTGGACAGGCTATTGCTCAAT
TGGAAGTGGGGCGGGATAGGGACGACGACGGCTTCAACGACAGCAGCAGA
CTCGAATAAAGGATGCGGAGGGGGAAAGGGCAAAAAGAAAGCGGCGGAGA
CGGTGAAGGAACGGACGGAATTAGTGAGGCAGTGGAAGTTGCTTGGGAAG
GCGCGCATGGCTGACGGTAGGTTCCCCTCGGATCACTTTGGGATTTCGTG
CCTGGTACGCTTGCCGGCATCTGGTGTATGACGAGGGTGAGTTCTATCCA
GTCAGTCAGAAAGAAAGTGAGCTGGCGAATAGTGAAAGTGTAGAAGCGAA
AGACATAGAAGAGAAAAAAAGGAAGAAAAACAAGATGAGG

Coding sequence (CDS) from alignment at scaffold_20:368989..370828+

>mRNA_7610 ID=mRNA_7610|Name=jgi.p|Nanoce1779_2|599347|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_20:368989..370828+ (Nannochloropsis oceanica)
ATGAAACGATACGTCGGCAGCAGCCATAGCAGCAGCATCAGCAGCGTAGC
TAACCCCTCCTCGCCGGACAACAACATGAAGCGTGCGAAAGTCGGCCTCC
TCTCCACGAATTTCTTGCGCGTTTGTTCGTACAACGTGGATGGGCTCGAT
GACCTCAACATCTCGGATCGCGCAAACGAAGTGTGCTCCATCCTACTCCA
AGAAGAACCGGACGGATTCTTGCCTGATGTCATTTTGCTGCAGGAAATCG
TGCAAGCAAATTTCCCGGTCTTTGTCTCCCGCCTTTGCTCCGCCGGGTAC
GTCCTCGCCCCTTCGTCCATCCCCGAAGACAACGAATACTTTACCTTAGC
CTTCTTCAACGGAGCTCGCATTCAAATCACACGTTCGATGCGCACGCCCT
TTTCCGGGTCGAATATGGGGCGGGATTTGATAAAGGTGGAGGGACGGCTG
GCACTTGGTGCTGCTGACGAAACCCCTTTCTCCTCAGCCTCTTCTCGTGA
GTTTCTTTTCATGACTTCCCACTTCGAGTCCTTGGGTCCTGGGTCCACGG
AACGCTGCCGGCAGCTTACGCAAATCTTAGACAATCTCCTCTCCTTCCCT
GGCCCTGCCCTTTTTGCCGGCGACACCAACCTGAGAGAGGGGGAGGTGAA
AGCCTGTGAGCAGTATAAGAAAGTGGTGGACGCCTGGATGGCTGCTGGGA
GTCCGGCCGCCGAAAAAGTGACGTGGGATATGTCGATAAATGACAACTTG
AAGATGGATGGTGCTTCTTTCTTGCCTCGAATGAGGTTGGACAGGCTATT
GCTCAATTGGAAGTGGGGCGGGATAGGGACGACGACGGCTTCAACGACAG
CAGCAGACTCGAATAAAGGATGCGGAGGGGGAAAGGGCAAAAAGAAAGCG
GCGGAGACGGTGAAGGAACGGACGGAATTAGTGAGGCAGTGGAAGTTGCT
TGGGAAGGCGCGCATGGCTGACGGTAGGTTCCCCTCGGATCACTTTGGGA
TTTCGTGCCTGGTACGCTTGCCGGCATCTGGTGTATGA

Synonyms

Publications