jgi.p|Nanoce1779_2|574047, mRNA_761 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574047
Unique Name	mRNA_761
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1813
Alignment location	scaffold_2:375770..377582 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574133
Track	FilteredModels2
ProteinId	574047

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:375770..377582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574047	gene_761	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574047	mRNA_761-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_761	CDS_761	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:375770..377582+
coding sequence from alignment at scaffold_2:375770..377582+

mRNA sequence

>mRNA_761 ID=mRNA_761|Name=jgi.p|Nanoce1779_2|574047|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp
AGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGAAAATTTCGT
CAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAGAAGAGCGTA
GAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCAATCCAACAC
ATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAATGGCGTTCA
GCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGCAATCCCCAA
GGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTATGTCGCCAC
CGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAAGTCAAAACT
CTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAGACCCCTGGA
CTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTGACCATGGTC
AATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATCGGCATGTGG
AAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCCTCACGTACA
TGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGCCTTGTCGCC
AGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCACCCCACGCT
GAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCATTGTGGTGCG
ACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTAACCCCACCA
ACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCTTCTACTCTC
TTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGCGTACATTGC
CCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCATTGATGATGT
CCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTATCTGTAATT
TTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGACACGGGCAT
GGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACCATGAACCCC
AGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAAGCTGCAGAA
ATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGCCACAACCAG
TACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACCCTACAAGCG
CCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGCTGCATGGAG
GCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCACGGGGATCC
AGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCATGTCTGCTG
ATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCATCGCCTGTC
CGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCATGCCGCCACA
AAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTACCAGCAGCA
GCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCGCCGCCTGCG
CCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTATGTACCATA
ACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATGTGTATAAAA
CCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAAACGATGAGA
AGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGAATAGGAATG
CCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAATGAATCGAA
GGATTTATCGAGC

protein sequence of jgi.p|Nanoce1779_2|574047

>mRNA_761-protein ID=mRNA_761-protein|Name=jgi.p|Nanoce1779_2|574047|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MESAPPPPPPAIVVRQESVTWPADSPPPNPTNYGSFSFFPPALESSTLLP
SSSLPPSSTAAAYIARSPCTDRRLRWRALMMSISMIVGVVAFVLVSVILF
TPRGHRRSDENDTGMALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEII
LGSAGTPTHTTATTSTAAAVADSGSPSYPTSAPDNPNIHIPVTMGCMEAK
CEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRM
GLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPS
PSDWGRYMPSGYVP*

mRNA from alignment at scaffold_2:375770..377582+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_761 ID=mRNA_761|Name=jgi.p|Nanoce1779_2|574047|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp|location=Sequence derived from alignment at scaffold_2:375770..377582+ (Nannochloropsis oceanica)
AGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGAAAATTTCGT
CAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAGAAGAGCGTA
GAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCAATCCAACAC
ATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAATGGCGTTCA
GCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGCAATCCCCAA
GGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTATGTCGCCAC
CGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAAGTCAAAACT
CTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAGACCCCTGGA
CTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTGACCATGGTC
AATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATCGGCATGTGG
AAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCCTCACGTACA
TGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGCCTTGTCGCC
AGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCACCCCACGCT
GAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCATTGTGGTGCG
ACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTAACCCCACCA
ACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCTTCTACTCTC
TTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGCGTACATTGC
CCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCATTGATGATGT
CCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTATCTGTAATT
TTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGACACGGGCAT
GGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACCATGAACCCC
AGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAAGCTGCAGAA
ATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGCCACAACCAG
TACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACCCTACAAGCG
CCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGCTGCATGGAG
GCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCACGGGGATCC
AGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCATGTCTGCTG
ATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCATCGCCTGTC
CGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCATGCCGCCACA
AAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTACCAGCAGCA
GCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCGCCGCCTGCG
CCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTATGTACCATA
ACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATGTGTATAAAA
CCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAAACGATGAGA
AGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGAATAGGAATG
CCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAATGAATCGAA
GGATTTATCGAGC

Coding sequence (CDS) from alignment at scaffold_2:375770..377582+

>mRNA_761 ID=mRNA_761|Name=jgi.p|Nanoce1779_2|574047|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_2:375770..377582+ (Nannochloropsis oceanica)
ATGGAATCTGCGCCACCGCCCCCGCCACCGGCCATTGTGGTGCGACAAGA
GTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTAACCCCACCAACTATG
GCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCTTCTACTCTCTTGCCG
TCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGCGTACATTGCCCGAAG
CCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCATTGATGATGTCCATTT
CTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTATCTGTAATTTTGTTC
ACACCGCGTGGGCACAGACGCTCAGATGAGAATGACACGGGCATGGCCTT
GGACTCGTACCCCTCTCCCTTTTCCTCCCACGACCATGAACCCCAGCACG
GTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAAGCTGCAGAAATTATT
CTCGGGAGCGCAGGCACCCCCACCCACACCACAGCCACAACCAGTACAGC
TGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACCCTACAAGCGCCCCTG
ACAATCCAAACATTCACATCCCTGTCACGATGGGCTGCATGGAGGCAAAG
TGTGAGGCATGGATGGCGGCTATGGGGAAGAACCACGGGGATCCAGCTAA
TTTGGTTCTTCTGGACTGCATTCAACGCACAGGCATGTCTGCTGATAGCG
CCAAAAGATGTTTTGCTAATTCGAATGTAACGGCATCGCCTGTCCGCATG
GGATTATACCGATGCGCCGTTTGCAAAGCGTGCATGCCGCCACAAAGCAA
GAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTACCAGCAGCAGCAGCA
CCGCCGCACCGGTGTCATCAACAGATATCACGTCGCCGCCTGCGCCCTCG
CCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTATGTACCATAA

Synonyms

Publications