jgi.p|Nanoce1779_2|599345, mRNA_7609 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599345
Unique NamemRNA_7609
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1315
Alignment locationscaffold_20:367586..368900 -

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Properties
Property NameValue
TranscriptId599431
TrackFilteredModels2
ProteinId599345
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:367586..368900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599345gene_7609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599345mRNA_7609-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7609CDS_7609Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7609 ID=mRNA_7609|Name=jgi.p|Nanoce1779_2|599345|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
CAGCGAGCCTGGCCCATCCCAACATCTTCTAGCCTCAAATGTTTGCGAGT
TTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCGGGCAAACAGCGA
CAATGGAGATGGAGGCGGTGGATCCAGCACCAACACACCAATCATCGCTG
CGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGACGTGCAGTTGATG
CTACACATTGACAAGGACTTCAACCTCCTTTGGAATCAGTGCTGCCATCA
TGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGGGAAATCTGCTAC
TTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCGGAGAGCTTTGGA
GGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGACGCCTGCGATTA
CATCAACGCAACCACACTAATTGCAACCGAATCTTTCAATGATTTTGAGC
ATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTACACTGCGAACGAG
AACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGACCTGCTAAAGCA
ACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGAGAGCCACCACTA
CCACCACCGCCGCCATCGATACTCCATCACATCCACTACACGCACAAATG
CACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCCTAGGGCTGAGTT
CTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCTCCCTCCTCCGTG
ACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTATCCCAAATCCAA
TTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAAGTCGTTGGGTTA
CGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAGAGGGGGTCTTCA
CCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAGAAGGAGGAGGAG
TATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGACACGTTGAGTTGAA
GAAGCATCAGAAGAATGATGAGGATGTGGCAGCTTCCTCGGAAGGAGTCG
GGGGGGATCCTATGCATGTAGGGGGAAGCGTCGCTGCAGGTAGTGCCGTC
TGTGCTGAAGCCGTGGCGTTGTGCGAGCAGCAAGTTATTGAGGAGGAAGC
AGCAGCACCTGCTGATACTGCTCTTGCGACAGCTTGTTATAGCGGCAGTG
GAAGTGGTGGTGGGCGGGCGCGACGCTTCCCATCCCTCTTCTTGTCGGGT
CGGCAACTAACTATCATGTCTCCAGCCGGGTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCT
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protein sequence of jgi.p|Nanoce1779_2|599345

>mRNA_7609-protein ID=mRNA_7609-protein|Name=jgi.p|Nanoce1779_2|599345|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MFASFHRGDKKSTEAGRANSDNGDGGGGSSTNTPIIAARSSSFSASSPSD
VQLMLHIDKDFNLLWNQCCHHETSTTQLQQKIKGNLLLFREAAQSLCAIS
ESFGGGLDSSTGGVSVDACDYINATTLIATESFNDFEHELREHVLSTMGY
TANENRRTEEKMKARLDLLKQHDAAFRAMVCARRATTTTTAAIDTPSHPL
HAQMHQREPQAVTVGTPRAEFFALQDQIKIEIGSLLRDRVNLFQKMLAKL
SQIQLRLFVKMYSVLSKSLGYDVEVPPPPAVSEEGVFTSKEEGLRKGEEK
KEEEYQEKGDRRSGG*
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mRNA from alignment at scaffold_20:367586..368900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7609 ID=mRNA_7609|Name=jgi.p|Nanoce1779_2|599345|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp|location=Sequence derived from alignment at scaffold_20:367586..368900- (Nannochloropsis oceanica)
CAGCGAGCCTGGCCCATCCCAACATCTTCTAGCCTCAAATGTTTGCGAGT
TTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCGGGCAAACAGCGA
CAATGGAGATGGAGGCGGTGGATCCAGCACCAACACACCAATCATCGCTG
CGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGACGTGCAGTTGATG
CTACACATTGACAAGGACTTCAACCTCCTTTGGAATCAGTGCTGCCATCA
TGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGGGAAATCTGCTAC
TTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCGGAGAGCTTTGGA
GGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGACGCCTGCGATTA
CATCAACGCAACCACACTAATTGCAACCGAATCTTTCAATGATTTTGAGC
ATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTACACTGCGAACGAG
AACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGACCTGCTAAAGCA
ACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGAGAGCCACCACTA
CCACCACCGCCGCCATCGATACTCCATCACATCCACTACACGCACAAATG
CACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCCTAGGGCTGAGTT
CTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCTCCCTCCTCCGTG
ACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTATCCCAAATCCAA
TTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAAGTCGTTGGGTTA
CGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAGAGGGGGTCTTCA
CCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAGAAGGAGGAGGAG
TATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGACACGTTGAGTTGAA
GAAGCATCAGAAGAATGATGAGGATGTGGCAGCTTCCTCGGAAGGAGTCG
GGGGGGATCCTATGCATGTAGGGGGAAGCGTCGCTGCAGGTAGTGCCGTC
TGTGCTGAAGCCGTGGCGTTGTGCGAGCAGCAAGTTATTGAGGAGGAAGC
AGCAGCACCTGCTGATACTGCTCTTGCGACAGCTTGTTATAGCGGCAGTG
GAAGTGGTGGTGGGCGGGCGCGACGCTTCCCATCCCTCTTCTTGTCGGGT
CGGCAACTAACTATCATGTCTCCAGCCGGGTTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at scaffold_20:367586..368900-

>mRNA_7609 ID=mRNA_7609|Name=jgi.p|Nanoce1779_2|599345|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_20:367586..368900- (Nannochloropsis oceanica)
ATGTTTGCGAGTTTCCACCGCGGCGACAAAAAGAGCACGGAAGCAGGGCG
GGCAAACAGCGACAATGGAGATGGAGGCGGTGGATCCAGCACCAACACAC
CAATCATCGCTGCGAGGTCCTCCTCCTTCTCCGCTTCTTCCCCCTCTGAC
GTGCAGTTGATGCTACACATTGACAAGGACTTCAACCTCCTTTGGAATCA
GTGCTGCCATCATGAGACCTCCACCACGCAGTTACAACAAAAGATTAAGG
GAAATCTGCTACTTTTCCGCGAGGCGGCGCAATCCCTGTGCGCCATCTCG
GAGAGCTTTGGAGGTGGCTTGGACTCGTCCACTGGAGGTGTCTCTGTCGA
CGCCTGCGATTACATCAACGCAACCACACTAATTGCAACCGAATCTTTCA
ATGATTTTGAGCATGAATTGCGGGAGCATGTACTTTCGACAATGGGTTAC
ACTGCGAACGAGAACCGACGGACAGAGGAAAAGATGAAAGCACGTCTTGA
CCTGCTAAAGCAACACGACGCCGCCTTTCGGGCCATGGTCTGCGCTCGGA
GAGCCACCACTACCACCACCGCCGCCATCGATACTCCATCACATCCACTA
CACGCACAAATGCACCAGCGAGAGCCCCAAGCAGTCACCGTGGGTACTCC
TAGGGCTGAGTTCTTCGCCTTGCAAGATCAAATAAAAATTGAAATTGGCT
CCCTCCTCCGTGACCGCGTGAACCTGTTTCAAAAGATGCTAGCCAAGCTA
TCCCAAATCCAATTGAGGCTTTTTGTCAAAATGTACAGTGTGCTGAGCAA
GTCGTTGGGTTACGATGTAGAGGTACCTCCCCCACCTGCTGTGTCGGAAG
AGGGGGTCTTCACCAGCAAGGAGGAGGGCCTTAGGAAGGGCGAGGAGAAG
AAGGAGGAGGAGTATCAGGAGAAGGGGGACAGGCGCAGTGGCGGGTGA
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Synonyms
Publications