jgi.p|Nanoce1779_2|161482, mRNA_7608 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|161482
Unique NamemRNA_7608
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length723
Alignment locationscaffold_20:366214..366936 -

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Properties
Property NameValue
TranscriptId161568
TrackFilteredModels2
ProteinId161482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:366214..366936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|161482gene_7608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|161482mRNA_7608-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7608CDS_7608Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7608 ID=mRNA_7608|Name=jgi.p|Nanoce1779_2|161482|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
TCTCTTGTTCTATTTAAGGCTTAAATCTGCCTTTTGCGTTGAAAGCGAAG
GCGTTGGAACCTCCTCCTTTTAAGGAAGGCAGCAGCAGTAGCAGCAGCGG
CAACGCTGGGGATGGATTTATGGCGCCCGCAATTGGCGCGATACAGCAGT
GGGTGGAGTGGAGTTTAAAAAAGGGTGCGGACAGGTATCGAGTCACTGCA
CAGCGGTAGGAGATGGCAGCACTGCAAAGATTCCTTCTCCCCTTGCCTTT
GTCCTCATCTGCAGGAGCAAGAGCCTCAGCAGCAGAAGTGACACCGGAGG
CTACTGTGACCGCATTGTGTCCTGCAGCCCCCTCTTCTTCCCAGTCTACC
ACTTTGTCTTTGTCAGCGATCCCCCACTACTGGCAGCAGCAGCAGCTGCA
GCAGCAGTACAACCCACTGGCTGGGTGCCGGCCTTCATTTTCTGGACGTG
GTTTGCCTTACACAAGCCTCTGTGTTAGCATAGAATGGAAGGAATTTCTC
ATGCGCGATGCTCGGGGGCAGGAGGCTTGGAAGCGGGCTACTACGAAGGG
GGCGGGATGCCCGAAAGCGGGCGAGGCTATGGAAGTACCTATCTATTGAA
CCAGTATCCCTTGGCGGCCGCTTTGCAATGCCAGCAGCACCAGCGGTCGT
AGTAGTAGTAGGAGCAGTAGCAGAAACTAGAAGAAGAACCTCAACTCCCG
CTCGCAAGTCCTCAGCAGCTTGG
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protein sequence of jgi.p|Nanoce1779_2|161482

>mRNA_7608-protein ID=mRNA_7608-protein|Name=jgi.p|Nanoce1779_2|161482|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MAALQRFLLPLPLSSSAGARASAAEVTPEATVTALCPAAPSSSQSTTLSL
SAIPHYWQQQQLQQQYNPLAGCRPSFSGRGLPYTSLCVSIEWKEFLMRDA
RGQEAWKRATTKGAGCPKAGEAMEVPIY*
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mRNA from alignment at scaffold_20:366214..366936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7608 ID=mRNA_7608|Name=jgi.p|Nanoce1779_2|161482|organism=Nannochloropsis oceanica|type=mRNA|length=723bp|location=Sequence derived from alignment at scaffold_20:366214..366936- (Nannochloropsis oceanica)
TCTCTTGTTCTATTTAAGGCTTAAATCTGCCTTTTGCGTTGAAAGCGAAG
GCGTTGGAACCTCCTCCTTTTAAGGAAGGCAGCAGCAGTAGCAGCAGCGG
CAACGCTGGGGATGGATTTATGGCGCCCGCAATTGGCGCGATACAGCAGT
GGGTGGAGTGGAGTTTAAAAAAGGGTGCGGACAGGTATCGAGTCACTGCA
CAGCGGTAGGAGATGGCAGCACTGCAAAGATTCCTTCTCCCCTTGCCTTT
GTCCTCATCTGCAGGAGCAAGAGCCTCAGCAGCAGAAGTGACACCGGAGG
CTACTGTGACCGCATTGTGTCCTGCAGCCCCCTCTTCTTCCCAGTCTACC
ACTTTGTCTTTGTCAGCGATCCCCCACTACTGGCAGCAGCAGCAGCTGCA
GCAGCAGTACAACCCACTGGCTGGGTGCCGGCCTTCATTTTCTGGACGTG
GTTTGCCTTACACAAGCCTCTGTGTTAGCATAGAATGGAAGGAATTTCTC
ATGCGCGATGCTCGGGGGCAGGAGGCTTGGAAGCGGGCTACTACGAAGGG
GGCGGGATGCCCGAAAGCGGGCGAGGCTATGGAAGTACCTATCTATTGAA
CCAGTATCCCTTGGCGGCCGCTTTGCAATGCCAGCAGCACCAGCGGTCGT
AGTAGTAGTAGGAGCAGTAGCAGAAACTAGAAGAAGAACCTCAACTCCCG
CTCGCAAGTCCTCAGCAGCTTGG
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Coding sequence (CDS) from alignment at scaffold_20:366214..366936-

>mRNA_7608 ID=mRNA_7608|Name=jgi.p|Nanoce1779_2|161482|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_20:366214..366936- (Nannochloropsis oceanica)
ATGGCAGCACTGCAAAGATTCCTTCTCCCCTTGCCTTTGTCCTCATCTGC
AGGAGCAAGAGCCTCAGCAGCAGAAGTGACACCGGAGGCTACTGTGACCG
CATTGTGTCCTGCAGCCCCCTCTTCTTCCCAGTCTACCACTTTGTCTTTG
TCAGCGATCCCCCACTACTGGCAGCAGCAGCAGCTGCAGCAGCAGTACAA
CCCACTGGCTGGGTGCCGGCCTTCATTTTCTGGACGTGGTTTGCCTTACA
CAAGCCTCTGTGTTAGCATAGAATGGAAGGAATTTCTCATGCGCGATGCT
CGGGGGCAGGAGGCTTGGAAGCGGGCTACTACGAAGGGGGCGGGATGCCC
GAAAGCGGGCGAGGCTATGGAAGTACCTATCTATTGA
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Synonyms
Publications