jgi.p|Nanoce1779_2|599342, mRNA_7607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599342
Unique NamemRNA_7607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1520
Alignment locationscaffold_20:364181..365783 -

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Properties
Property NameValue
TranscriptId599428
TrackFilteredModels2
ProteinId599342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:364181..365783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599342gene_7607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599342mRNA_7607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7607CDS_7607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7607 ID=mRNA_7607|Name=jgi.p|Nanoce1779_2|599342|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
TAGTAGTAGTGATAGTAGTAGTAGCAGCAGCAGTGCGACATTTGGCGTGG
ACGTAAACTAAGTACAGCCTAATTCGCCTTCTGCTTTTGCGCCTACTCCT
GGGTTGTATCGATCTCTTGAAGCATGAGCGCAGGACAATGTGAGGCATTA
CGAAAAGTCGAGTCGAGACGGGTGCTGGCCGGCACAAGCTCATTTACTTT
TTATGTCCCACACCCACCCGCGAGCAGTGGCTTAGACACCGAGAGGGAGG
AGAGGACCACCGACAGTTGCAGGAGCGACGGCGCATCATCATTATCACGA
TCCCTCTCCGCAGGTAGACGATCTTGGACAGCGTAGCTCGAACTGGATCA
GTGAGATCGAGGTGAAGCGTACCCACGTCGTCGACCGTGGTTTTTTCCTT
TGGAGTGATTTCTCAGAGAGTTACCTTCTCGGGGAGGAGAGCAGCCACGC
GTGCAGCAGCAGGAGCAGTAGAAGTAGCAGTAAAAGTAGCAGTAGAAGTA
GCAGCAGTCATGGCACGAAGTCCACCAGCCGGAGCAACCATCACGAGGAA
AGTGGGCAAGACTTCACGAAAATCTTTCGAGAAGAAGCCCTTTCAACTGG
AGCAGCAACTGAAGGAGCCCGAAGGAGAGGGATAGATCTCGTCCCTCACA
GCCCATAACGGTTGGCGAGCTCTATTGTCGCGAGCTTCAGCGAGGGCGTC
TCAGCCGTGTCTTACAGGCATATGCAGTGTTTAACTCTCGATAGAGATAC
TGCCAGGGGATGAATGTATGCACGGCAATCTTGTTGACAGTGACTGGGAA
TGACGAAGAAGCGGCATTTGAGATGTTGGTGGGGTTGTGTGAGCGGTGTC
AGATGGAGGAGATGTGGATGGAGGGCATGCCGCGCTTGAAGGCTTGTTTT
GCGGTGTTGAATCGATTGTTGCACTTGCGGACGCCGGCTTTGCACGCGCT
TTTTGAGGAGGCTGGGGTGCATGTAGCCATGCTTTCGTCCAAGTAGTTCG
TGACTTTGTTCTCGAATCTGGATACCTTGCCACTGCAGACCGTGTCGAGT
TCGTAGAAGGATGGAGTGTGATTTTGGGGGTGGCCGTCTCTCTCATCGAG
ATGCTGGAGAGTCAATTGAAGGACTTGAAGCTTGACGACGTACTGCATAT
GATGCAAGACCCTCAAAAGGCGCCGCTGGAACTCCTCCTGACCCAGAGCC
CGATAAGGCAGCCGGTGGGTTGTTCTGAGGAGAAGGAATGTGCGGACGGG
GAAGGGGGCGGCGGCGTGGCTAGGGTAGGACAGGAAGCGACGAGGACAGG
GGAAAAGAGTGTCGGCGAGACTCTTCAGGAGACGGGTGAAAGCAGAGCGG
CGATGTCTATGTCGGCCGTGCTCATGCGGAGAGGAATCGCCATCACACAT
GGCGCCCAAGTATTAGCCGAGGTGCAGGAGGAGTATAATTTATAAACTGT
AGATAGGTGACAAGTGTGGGATTGAGAAAGCTCCAACAACGGGGACATGG
AAGAAGAAATGTTTTACCAA
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protein sequence of jgi.p|Nanoce1779_2|599342

>mRNA_7607-protein ID=mRNA_7607-protein|Name=jgi.p|Nanoce1779_2|599342|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MNVCTAILLTVTGNDEEAAFEMLVGLCERCQMEEMWMEGMPRLKACFAVL
NRLLHLRTPALHALFEEAGVHVAMLSSK*
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mRNA from alignment at scaffold_20:364181..365783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7607 ID=mRNA_7607|Name=jgi.p|Nanoce1779_2|599342|organism=Nannochloropsis oceanica|type=mRNA|length=1603bp|location=Sequence derived from alignment at scaffold_20:364181..365783- (Nannochloropsis oceanica)
TAGTAGTAGTGATAGTAGTAGTAGCAGCAGCAGTGCGACATTTGGCGTGG
ACGTAAACTAAGTACAGCCTAATTCGCCTTCTGCTTTTGCGCCTACTCCT
GGGTTGTATCGATCTCTTGAAGCATGAGCGCAGGACAATGTGAGGCATTA
CGAAAAGTCGAGTCGAGACGGGTGCTGGCCGGCACAAGCTCATTTACTTT
TTATGTCCCACACCCACCCGCGAGCAGTGGCTTAGACACCGAGAGGGAGG
AGAGGACCACCGACAGTTGCAGGAGCGACGGCGGTAAGGGGCAGCAGCAG
GCATCCCCTTAGTTAGTGACTGTAAGAGCAGCAGCACCACTAACTGAGTC
TTACCTTCCTTACCAGCATCATCATTATCACGATCCCTCTCCGCAGGTAG
ACGATCTTGGACAGCGTAGCTCGAACTGGATCAGTGAGATCGAGGTGAAG
CGTACCCACGTCGTCGACCGTGGTTTTTTCCTTTGGAGTGATTTCTCAGA
GAGTTACCTTCTCGGGGAGGAGAGCAGCCACGCGTGCAGCAGCAGGAGCA
GTAGAAGTAGCAGTAAAAGTAGCAGTAGAAGTAGCAGCAGTCATGGCACG
AAGTCCACCAGCCGGAGCAACCATCACGAGGAAAGTGGGCAAGACTTCAC
GAAAATCTTTCGAGAAGAAGCCCTTTCAACTGGAGCAGCAACTGAAGGAG
CCCGAAGGAGAGGGATAGATCTCGTCCCTCACAGCCCATAACGGTTGGCG
AGCTCTATTGTCGCGAGCTTCAGCGAGGGCGTCTCAGCCGTGTCTTACAG
GCATATGCAGTGTTTAACTCTCGATAGAGATACTGCCAGGGGATGAATGT
ATGCACGGCAATCTTGTTGACAGTGACTGGGAATGACGAAGAAGCGGCAT
TTGAGATGTTGGTGGGGTTGTGTGAGCGGTGTCAGATGGAGGAGATGTGG
ATGGAGGGCATGCCGCGCTTGAAGGCTTGTTTTGCGGTGTTGAATCGATT
GTTGCACTTGCGGACGCCGGCTTTGCACGCGCTTTTTGAGGAGGCTGGGG
TGCATGTAGCCATGCTTTCGTCCAAGTAGTTCGTGACTTTGTTCTCGAAT
CTGGATACCTTGCCACTGCAGACCGTGTCGAGTTCGTAGAAGGATGGAGT
GTGATTTTGGGGGTGGCCGTCTCTCTCATCGAGATGCTGGAGAGTCAATT
GAAGGACTTGAAGCTTGACGACGTACTGCATATGATGCAAGACCCTCAAA
AGGCGCCGCTGGAACTCCTCCTGACCCAGAGCCCGATAAGGCAGCCGGTG
GGTTGTTCTGAGGAGAAGGAATGTGCGGACGGGGAAGGGGGCGGCGGCGT
GGCTAGGGTAGGACAGGAAGCGACGAGGACAGGGGAAAAGAGTGTCGGCG
AGACTCTTCAGGAGACGGGTGAAAGCAGAGCGGCGATGTCTATGTCGGCC
GTGCTCATGCGGAGAGGAATCGCCATCACACATGGCGCCCAAGTATTAGC
CGAGGTGCAGGAGGAGTATAATTTATAAACTGTAGATAGGTGACAAGTGT
GGGATTGAGAAAGCTCCAACAACGGGGACATGGAAGAAGAAATGTTTTAC
CAA
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Coding sequence (CDS) from alignment at scaffold_20:364181..365783-

>mRNA_7607 ID=mRNA_7607|Name=jgi.p|Nanoce1779_2|599342|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_20:364181..365783- (Nannochloropsis oceanica)
ATGAATGTATGCACGGCAATCTTGTTGACAGTGACTGGGAATGACGAAGA
AGCGGCATTTGAGATGTTGGTGGGGTTGTGTGAGCGGTGTCAGATGGAGG
AGATGTGGATGGAGGGCATGCCGCGCTTGAAGGCTTGTTTTGCGGTGTTG
AATCGATTGTTGCACTTGCGGACGCCGGCTTTGCACGCGCTTTTTGAGGA
GGCTGGGGTGCATGTAGCCATGCTTTCGTCCAAGTAG
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Synonyms
Publications