jgi.p|Nanoce1779_2|599337, mRNA_7605 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599337
Unique NamemRNA_7605
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1047
Alignment locationscaffold_20:362430..363476 -

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Properties
Property NameValue
TranscriptId599423
TrackFilteredModels2
ProteinId599337
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:362430..363476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599337gene_7605Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599337mRNA_7605-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7605CDS_7605Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7605 ID=mRNA_7605|Name=jgi.p|Nanoce1779_2|599337|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
ACAGCGGGAGGCACGCACGCCCACGTGACAGCCATGACCACTCTCATGAC
GGTAACCGCGGATGAGAAGGTGGAGATGAGCTTAGACGATCTGGTCAAGC
TGGAACGCAAGCAGCAGCAACAACAGAAGAAGAAGCCCATCGCTCCTGCA
GCGGCTGGCGGTGCCCAGAACAGCAAACAGAACAAGCGAGGCGGAGTCCG
TAAGCCCGTTCTGAAGCAGACACAGGCAGGGCAAACACGTAAACCGGGCC
AGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGAGCAAGCGGAACCTGGCC
ATCAACAATGCACGTGGTATCCAACCCGCACCAATGGTCGGCGTCACGAC
AGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAAGAAGAAGGCCTCGCCCG
CACCTAAGAAGATGTCGATCAAGGTCAGCAATGTCCAGGCGAACGGCGGT
GGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTCACTTCACTGGACGGTGG
TGTCAGCGGCAAGAAGGCTGCGGACTTTGTATTTGACAGCGCCGTCGGCA
ATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCTTTGGGCCTGGAGGCTTC
AAACTACCCAAGGGCACCACCCTCAAGATTTCCATTAATAATACTGCCAA
CGCTGGGACTGCCACGACCCCTGTCAATCCCATGGCCGCGCAGCGTAAAA
AGAAGCAGCAGCAGCCACAGCAGATGCAGGTGATTTTGAATCGAAGCAGT
GGTCCTCGTGTGAGTATGAAGGCGATGCAAGCGGAGCGACAGGCAGGGGC
AGGGGCTTTGGCCCGACGGATGGGTCGCATTTCCGTGACGCAGAATACGC
GGCAGATGCTTTTCAACCAAAGCCGTGGCTTGCCTCCGACTGCACCACAG
CAATTGCAGGTGACGACTGCGGGGGGTGGGGGGAAAACAAAGAAAAAGAT
AAATTCTGGTGGAGGAATGGGTGGGGGGAACCCGCGTCAGGTGATTGTGC
GGCGTCGGGTGAAATAAGGCAGGAGCTCTTGTCTTATTCCTCGGGGT
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protein sequence of jgi.p|Nanoce1779_2|599337

>mRNA_7605-protein ID=mRNA_7605-protein|Name=jgi.p|Nanoce1779_2|599337|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MTTLMTVTADEKVEMSLDDLVKLERKQQQQQKKKPIAPAAAGGAQNSKQN
KRGGVRKPVLKQTQAGQTRKPGQAAKQSVLQAQSKRNLAINNARGIQPAP
MVGVTTAGAAGGKKRKKKKASPAPKKMSIKVSNVQANGGGRRGGVGGGGV
TSLDGGVSGKKAADFVFDSAVGNGGSGGGGGESFGPGGFKLPKGTTLKIS
INNTANAGTATTPVNPMAAQRKKKQQQPQQMQVILNRSSGPRVSMKAMQA
ERQAGAGALARRMGRISVTQNTRQMLFNQSRGLPPTAPQQLQVTTAGGGG
KTKKKINSGGGMGGGNPRQVIVRRRV
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mRNA from alignment at scaffold_20:362430..363476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7605 ID=mRNA_7605|Name=jgi.p|Nanoce1779_2|599337|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at scaffold_20:362430..363476- (Nannochloropsis oceanica)
ACAGCGGGAGGCACGCACGCCCACGTGACAGCCATGACCACTCTCATGAC
GGTAACCGCGGATGAGAAGGTGGAGATGAGCTTAGACGATCTGGTCAAGC
TGGAACGCAAGCAGCAGCAACAACAGAAGAAGAAGCCCATCGCTCCTGCA
GCGGCTGGCGGTGCCCAGAACAGCAAACAGAACAAGCGAGGCGGAGTCCG
TAAGCCCGTTCTGAAGCAGACACAGGCAGGGCAAACACGTAAACCGGGCC
AGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGAGCAAGCGGAACCTGGCC
ATCAACAATGCACGTGGTATCCAACCCGCACCAATGGTCGGCGTCACGAC
AGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAAGAAGAAGGCCTCGCCCG
CACCTAAGAAGATGTCGATCAAGGTCAGCAATGTCCAGGCGAACGGCGGT
GGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTCACTTCACTGGACGGTGG
TGTCAGCGGCAAGAAGGCTGCGGACTTTGTATTTGACAGCGCCGTCGGCA
ATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCTTTGGGCCTGGAGGCTTC
AAACTACCCAAGGGCACCACCCTCAAGATTTCCATTAATAATACTGCCAA
CGCTGGGACTGCCACGACCCCTGTCAATCCCATGGCCGCGCAGCGTAAAA
AGAAGCAGCAGCAGCCACAGCAGATGCAGGTGATTTTGAATCGAAGCAGT
GGTCCTCGTGTGAGTATGAAGGCGATGCAAGCGGAGCGACAGGCAGGGGC
AGGGGCTTTGGCCCGACGGATGGGTCGCATTTCCGTGACGCAGAATACGC
GGCAGATGCTTTTCAACCAAAGCCGTGGCTTGCCTCCGACTGCACCACAG
CAATTGCAGGTGACGACTGCGGGGGGTGGGGGGAAAACAAAGAAAAAGAT
AAATTCTGGTGGAGGAATGGGTGGGGGGAACCCGCGTCAGGTGATTGTGC
GGCGTCGGGTGAAATAAGGCAGGAGCTCTTGTCTTATTCCTCGGGGT
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Coding sequence (CDS) from alignment at scaffold_20:362430..363476-

>mRNA_7605 ID=mRNA_7605|Name=jgi.p|Nanoce1779_2|599337|organism=Nannochloropsis oceanica|type=CDS|length=979bp|location=Sequence derived from alignment at scaffold_20:362430..363476- (Nannochloropsis oceanica)
ATGACCACTCTCATGACGGTAACCGCGGATGAGAAGGTGGAGATGAGCTT
AGACGATCTGGTCAAGCTGGAACGCAAGCAGCAGCAACAACAGAAGAAGA
AGCCCATCGCTCCTGCAGCGGCTGGCGGTGCCCAGAACAGCAAACAGAAC
AAGCGAGGCGGAGTCCGTAAGCCCGTTCTGAAGCAGACACAGGCAGGGCA
AACACGTAAACCGGGCCAGGCAGCCAAGCAGAGCGTTCTTCAAGCCCAGA
GCAAGCGGAACCTGGCCATCAACAATGCACGTGGTATCCAACCCGCACCA
ATGGTCGGCGTCACGACAGCCGGGGCTGCCGGCGGCAAGAAGAGGAAAAA
GAAGAAGGCCTCGCCCGCACCTAAGAAGATGTCGATCAAGGTCAGCAATG
TCCAGGCGAACGGCGGTGGTCGTCGCGGTGGTGTTGGAGGAGGGGGAGTC
ACTTCACTGGACGGTGGTGTCAGCGGCAAGAAGGCTGCGGACTTTGTATT
TGACAGCGCCGTCGGCAATGGGGGCAGTGGGGGTGGTGGTGGGGAAAGCT
TTGGGCCTGGAGGCTTCAAACTACCCAAGGGCACCACCCTCAAGATTTCC
ATTAATAATACTGCCAACGCTGGGACTGCCACGACCCCTGTCAATCCCAT
GGCCGCGCAGCGTAAAAAGAAGCAGCAGCAGCCACAGCAGATGCAGGTGA
TTTTGAATCGAAGCAGTGGTCCTCGTGTGAGTATGAAGGCGATGCAAGCG
GAGCGACAGGCAGGGGCAGGGGCTTTGGCCCGACGGATGGGTCGCATTTC
CGTGACGCAGAATACGCGGCAGATGCTTTTCAACCAAAGCCGTGGCTTGC
CTCCGACTGCACCACAGCAATTGCAGGTGACGACTGCGGGGGGTGGGGGG
AAAACAAAGAAAAAGATAAATTCTGGTGGAGGAATGGGTGGGGGGAACCC
GCGTCAGGTGATTGTGCGGCGTCGGGTGA
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Synonyms
Publications