jgi.p|Nanoce1779_2|599335, mRNA_7604 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599335
Unique NamemRNA_7604
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length944
Alignment locationscaffold_20:360971..361914 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599421
TrackFilteredModels2
ProteinId599335
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:360971..361914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599335gene_7604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599335mRNA_7604-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7604CDS_7604Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7604 ID=mRNA_7604|Name=jgi.p|Nanoce1779_2|599335|organism=Nannochloropsis oceanica|type=mRNA|length=944bp
AGCCCCCTTTGATTTTTGTAACCCTTATCGAACCAGCCGGCATTGCGCCA
TCCAGCATCTTCTCCCCGTGTTCATAGCGAGACTCCCGGTGAGATCGCCC
CCCCCTCAAACGAAAAATGCAGCCTCCACCGTACGACGCCGCCATCCAAT
CACAGCCATCCAAGCCCCCGCGAAGCAAATTCGACGCTCCTTCGCCGCCA
CCATCCCTGAAGCAAGAGATCAAACTGATCAATAATGCCGCAGAACGCCG
CAAGTACGAGGACCTAGCCGACCTCTACTCCATCATCAAGGCCACGGAGC
ATTTGGAGGCAGCCTTTGCTCGTGACGCCGTCACTCAAGAAGATTATACC
GCCGCGTGCAGCAAGTTGATCTCGCAATTTAAGTCCACCGAGGCCGCGGT
GCTGGCTGCCAAGACAGTGGCCGACACTCAAGCCTTTATGAGTGAATACC
ACATGGACTGCCCCCGGGCAGTGGAGCGCTTGCTTCGACTGGGCGTTCCT
GCCACGGTTATCAATCCTTCCTCGGACGACGGGCGAGGGGAGGCCATCAA
GGTGGCCGAGACGGTACAGCACTTCATCACGGCTATGGACGGCGTGCGGT
TGGAGCAGCGGGCCGTTGATGAGCTGCAACCAATGCTGACGGACATTATG
ACGAGTCTCACCCGCGTCCCGGGGCTGCCGACCGACTTTGTCGCCAGCAA
AAAGTTGGAGGATTGGCTGGTCACACTCAATGCTATGCGGGCCATGGACA
GTATCACGGAGGAGCAGGCGAGGCAGTTGCTCTTTGACTTGGACCAAGGA
TACAGCTCGTTTCACGCCTGGTTGAAGGCCGGTAATTAGTAGGAGGAAGG
TCGGGGGGAAGGAAAAGGAAGAGTTTGGTGTATTTGTGGTACAAACATCT
GGAAATAGAAATCAATAGTAGGGTCCAAAAACATTCAAACTGTA
back to top

protein sequence of jgi.p|Nanoce1779_2|599335

>mRNA_7604-protein ID=mRNA_7604-protein|Name=jgi.p|Nanoce1779_2|599335|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MQPPPYDAAIQSQPSKPPRSKFDAPSPPPSLKQEIKLINNAAERRKYEDL
ADLYSIIKATEHLEAAFARDAVTQEDYTAACSKLISQFKSTEAAVLAAKT
VADTQAFMSEYHMDCPRAVERLLRLGVPATVINPSSDDGRGEAIKVAETV
QHFITAMDGVRLEQRAVDELQPMLTDIMTSLTRVPGLPTDFVASKKLEDW
LVTLNAMRAMDSITEEQARQLLFDLDQGYSSFHAWLKAGN*
back to top

mRNA from alignment at scaffold_20:360971..361914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7604 ID=mRNA_7604|Name=jgi.p|Nanoce1779_2|599335|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at scaffold_20:360971..361914+ (Nannochloropsis oceanica)
AGCCCCCTTTGATTTTTGTAACCCTTATCGAACCAGCCGGCATTGCGCCA
TCCAGCATCTTCTCCCCGTGTTCATAGCGAGACTCCCGGTGAGATCGCCC
CCCCCTCAAACGAAAAATGCAGCCTCCACCGTACGACGCCGCCATCCAAT
CACAGCCATCCAAGCCCCCGCGAAGCAAATTCGACGCTCCTTCGCCGCCA
CCATCCCTGAAGCAAGAGATCAAACTGATCAATAATGCCGCAGAACGCCG
CAAGTACGAGGACCTAGCCGACCTCTACTCCATCATCAAGGCCACGGAGC
ATTTGGAGGCAGCCTTTGCTCGTGACGCCGTCACTCAAGAAGATTATACC
GCCGCGTGCAGCAAGTTGATCTCGCAATTTAAGTCCACCGAGGCCGCGGT
GCTGGCTGCCAAGACAGTGGCCGACACTCAAGCCTTTATGAGTGAATACC
ACATGGACTGCCCCCGGGCAGTGGAGCGCTTGCTTCGACTGGGCGTTCCT
GCCACGGTTATCAATCCTTCCTCGGACGACGGGCGAGGGGAGGCCATCAA
GGTGGCCGAGACGGTACAGCACTTCATCACGGCTATGGACGGCGTGCGGT
TGGAGCAGCGGGCCGTTGATGAGCTGCAACCAATGCTGACGGACATTATG
ACGAGTCTCACCCGCGTCCCGGGGCTGCCGACCGACTTTGTCGCCAGCAA
AAAGTTGGAGGATTGGCTGGTCACACTCAATGCTATGCGGGCCATGGACA
GTATCACGGAGGAGCAGGCGAGGCAGTTGCTCTTTGACTTGGACCAAGGA
TACAGCTCGTTTCACGCCTGGTTGAAGGCCGGTAATTAGTAGGAGGAAGG
TCGGGGGGAAGGAAAAGGAAGAGTTTGGTGTATTTGTGGTACAAACATCT
GGAAATAGAAATCAATAGTAGGGTCCAAAAACATTCAAACTGTA
back to top

Coding sequence (CDS) from alignment at scaffold_20:360971..361914+

>mRNA_7604 ID=mRNA_7604|Name=jgi.p|Nanoce1779_2|599335|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_20:360971..361914+ (Nannochloropsis oceanica)
ATGCAGCCTCCACCGTACGACGCCGCCATCCAATCACAGCCATCCAAGCC
CCCGCGAAGCAAATTCGACGCTCCTTCGCCGCCACCATCCCTGAAGCAAG
AGATCAAACTGATCAATAATGCCGCAGAACGCCGCAAGTACGAGGACCTA
GCCGACCTCTACTCCATCATCAAGGCCACGGAGCATTTGGAGGCAGCCTT
TGCTCGTGACGCCGTCACTCAAGAAGATTATACCGCCGCGTGCAGCAAGT
TGATCTCGCAATTTAAGTCCACCGAGGCCGCGGTGCTGGCTGCCAAGACA
GTGGCCGACACTCAAGCCTTTATGAGTGAATACCACATGGACTGCCCCCG
GGCAGTGGAGCGCTTGCTTCGACTGGGCGTTCCTGCCACGGTTATCAATC
CTTCCTCGGACGACGGGCGAGGGGAGGCCATCAAGGTGGCCGAGACGGTA
CAGCACTTCATCACGGCTATGGACGGCGTGCGGTTGGAGCAGCGGGCCGT
TGATGAGCTGCAACCAATGCTGACGGACATTATGACGAGTCTCACCCGCG
TCCCGGGGCTGCCGACCGACTTTGTCGCCAGCAAAAAGTTGGAGGATTGG
CTGGTCACACTCAATGCTATGCGGGCCATGGACAGTATCACGGAGGAGCA
GGCGAGGCAGTTGCTCTTTGACTTGGACCAAGGATACAGCTCGTTTCACG
CCTGGTTGAAGGCCGGTAATTAG
back to top
Synonyms
Publications