jgi.p|Nanoce1779_2|599303, mRNA_7600 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599303
Unique Name	mRNA_7600
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1939
Alignment location	scaffold_20:345827..347981 -

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Properties


Property Name	Value
TranscriptId	599389
Track	FilteredModels2
ProteinId	599303

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:345827..347981 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599303	gene_7600	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599303	mRNA_7600-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7600	CDS_7600	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:345827..347981-
coding sequence from alignment at scaffold_20:345827..347981-

mRNA sequence

>mRNA_7600 ID=mRNA_7600|Name=jgi.p|Nanoce1779_2|599303|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp
ACAGGAGAAGGAGCGCGCAGGGGAAGGGGCACCAGTAGCCATTCCTCTTC
TTCTTAAATCGGCCTCTCCCTTCGTGGTGCAGCAGGCAGGCATACAAGGG
CAAGGAGGCGCCGTCCTGTTCAAAGCGAGATTTGCTTTGTGCGCGCTGTA
GTGCATGCGCGAGGGAGACGAACATTCAAAGCACGAATAGCCGCGACAAT
AATAATCTGAAATGGCTCGGCGTATCACCATGTCATGTTGCACGGGGGGC
TCGTGCGGGGGTAGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCTCGT
GCAAGTAGCCACGGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACGTGG
CTTACTGGCTGGGATTACAGGATTCCTTCACCACGAAAGTGCCCCTATCT
CTCAAATCCGTCGTGGCACTCATCCGCACCCTGGAAGGCCGCGACAAAGT
CACCAAGACGATCCAGTACGCTTGCCGGTTCCTGTGGTGGTACCATAAGA
ACCACATGCCTACGGACGAGAGCCGGGGCTCGCGATTTGAGAAGATGTTT
CGTGCCTCCCAGACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCTTTGA
GGAGCTGGAGAAGCTGCAAGCCTTGTCCTCCGACACCAAGACGCCCCAGT
GGCGGCGCCGGCTGATGATGCTGCGGGCGGCAGCCATGGCGGTCTACTGG
TTCTACGACAACACGTGCTTTTTCATCATCGTCAAGCTCTCCACCTTCGA
CCAGCGTACAGCCATCGCTCGCGACGGCGCCGCGTGGTCATTGGCCAACC
TGATCTCCGTGGGCCTCGCGCTCTACGACCTGGACCAGAACAGCAAGGAT
CGGAGGCGCCTTGAGGACAAGACGGTCGCACTGCTCAAGGCAAGGGCTGG
CGCCGGCAGGACTAGCACGGGCATCAGCCCCACCCACAGTGTGGCGGCTG
GCTCGGCCGCTGAGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTCGACG
GTGGGGAACGGTGCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTGGAGC
TAGCAATAGGAGTTTGGTGAATGGGAGCGGGAACGGCGTTGGCATTGACA
TCAACAAGGAGCTTAGGAGCCGACAGGCCGTCACTTCCACCCCCACGACC
AGCAGCAGCAGCCAGCCACAGGGCGGGGACACTGTGGCGGATATCGACGT
TGAAGAGGTTCTAGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTTGACC
TCGTGGGTGACATGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTGCAAC
TCCCCCGGATTCGACTTGCCACTGAGATTGCTTGGCTACCGGCTCCACGA
CGGCGTCATTGGTACGGCGGGCCTCATTTCGGCAATTTCGGCCGTGTACA
AGGCTTACCCGTCTGACATGGAACGTCTGCGGAAACACCGTCTCGTCCGC
TTACTTGGTGCGGCGCCCTGAGAGAGGACGGCTGGCAGCGAATGGGGGGT
AGGTGGGTTGTGTCTAGTCCCTATCTACACAGGCAATCTGATGTCCTGTT
ATACTCTCTTAGAGTGTATGTAGATCGCGCTCTCTGCCTGCTTGTTTGTT
TGGTGGATATATGCCTCTTCAGCGCTGTGGATATGTCCTCGTCCCTTCAC
GCCCCCTCGCCCCCTTTTTGTTTACAGAAGCAGTGCGAAAAAACGAACTT
CTTCCTTTCGTGTGTTTAGCTGCAGGCCTTTGTCCATAATAGATTCGATG
TCCACGCCAGCCGTCTCGTCGAGGAGTAAATCTTCTTCCACTGCCTGCAT
GTCCCTTTCAGCGTTTGTTTTTCGCCTTTTTAAAGGTATAAATTTGACGC
CATTCTTCCTTCTTTTTTGCCCACTGAATTAATTAAGAAGAGAGCTGAAG
AAAAGACATATAAACAAAAGCAAGTCAGAATAACAGACA

protein sequence of jgi.p|Nanoce1779_2|599303

>mRNA_7600-protein ID=mRNA_7600-protein|Name=jgi.p|Nanoce1779_2|599303|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MARRITMSCCTGGSCGGSSTLAGAAAPFLVQVATGGAESLTRPLDVAYWL
GLQDSFTTKVPLSLKSVVALIRTLEGRDKVTKTIQYACRFLWWYHKNHMP
TDESRGSRFEKMFRASQTARKCFHLFRTFEELEKLQALSSDTKTPQWRRR
LMMLRAAAMAVYWFYDNTCFFIIVKLSTFDQRTAIARDGAAWSLANLISV
GLALYDLDQNSKDRRRLEDKTVALLKARAGAGRTSTGISPTHSVAAGSAA
EGEIVGEGSTASTVGNGASAKVAGIWSSGASNRSLVNGSGNGVGIDINKE
LRSRQAVTSTPTTSSSSQPQGGDTVADIDVEEVLEEMARANVKRFDLVGD
MLRASCDFVVACNSPGFDLPLRLLGYRLHDGVIGTAGLISAISAVYKAYP
SDMERLRKHRLVRLLGAAP*

mRNA from alignment at scaffold_20:345827..347981-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7600 ID=mRNA_7600|Name=jgi.p|Nanoce1779_2|599303|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp|location=Sequence derived from alignment at scaffold_20:345827..347981- (Nannochloropsis oceanica)
ACAGGAGAAGGAGCGCGCAGGGGAAGGGGCACCAGTAGCCATTCCTCTTC
TTCTTAAATCGGCCTCTCCCTTCGTGGTGCAGCAGGCAGGCATACAAGGG
CAAGGAGGCGCCGTCCTGTTCAAAGCGAGATTTGCTTTGTGCGCGCTGTA
GTGCATGCGCGAGGGAGACGAACATTCAAAGCACGAATAGCCGCGACAAT
AATAATCTGAAATGGCTCGGCGTATCACCATGTCATGTTGCACGGGGGGC
TCGTGCGGGGGTAGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCTCGT
GCAAGTAGCCACGGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACGTGG
CTTACTGGCTGGGATTACAGGATTCCTTCACCACGAAAGTGCCCCTATCT
CTCAAATCCGTCGTGGCACTCATCCGCACCCTGGAAGGCCGCGACAAAGT
CACCAAGGTACGACGATGATAATGACAGGATGTGATGGTCGAATGAGGAT
GTGAATGGTGTGAGAGAGCGAGATCGGATTGTAGTCTTGCGCTATGTTAG
ACAGCTTTGGTCCAGGTTTTAGGATAATCACGACAAGATTGAGAGGGCAA
TGCTTGTGCACCTTACTTACTCCAATTGAATCCATCCCCTCGCCTTTTAC
TCATCATTACCAACTTACACTAGACGATCCAGTACGCTTGCCGGTTCCTG
TGGTGGTACCATAAGAACCACATGCCTACGGACGAGAGCCGGGGCTCGCG
ATTTGAGAAGATGTTTCGTGCCTCCCAGACTGCCCGTAAGTGTTTCCACC
TCTTCCGTACCTTTGAGGAGCTGGAGAAGCTGCAAGCCTTGTCCTCCGAC
ACCAAGACGCCCCAGTGGCGGCGCCGGCTGATGATGCTGCGGGCGGCAGC
CATGGCGGTCTACTGGTTCTACGACAACACGTGCTTTTTCATCATCGTCA
AGCTCTCCACCTTCGACCAGCGTACAGCCATCGCTCGCGACGGCGCCGCG
TGGTCATTGGCCAACCTGATCTCCGTGGGCCTCGCGCTCTACGACCTGGA
CCAGAACAGCAAGGATCGGAGGCGCCTTGAGGACAAGACGGTCGCACTGC
TCAAGGCAAGGGCTGGCGCCGGCAGGACTAGCACGGGCATCAGCCCCACC
CACAGTGTGGCGGCTGGCTCGGCCGCTGAGGGCGAGATTGTGGGGGAGGG
GTCGACGGCTTCGACGGTGGGGAACGGTGCGTCGGCGAAGGTGGCTGGCA
TTTGGAGTAGTGGAGCTAGCAATAGGAGTTTGGTGAATGGGAGCGGGAAC
GGCGTTGGCATTGACATCAACAAGGAGCTTAGGAGCCGACAGGCCGTCAC
TTCCACCCCCACGACCAGCAGCAGCAGCCAGCCACAGGGCGGGGACACTG
TGGCGGATATCGACGTTGAAGAGGTTCTAGAGGAGATGGCGAGGGCGAAC
GTGAAGCGCTTTGACCTCGTGGGTGACATGCTGCGGGCCTCGTGCGACTT
TGTGGTGGCTTGCAACTCCCCCGGATTCGACTTGCCACTGAGATTGCTTG
GCTACCGGCTCCACGACGGCGTCATTGGTACGGCGGGCCTCATTTCGGCA
ATTTCGGCCGTGTACAAGGCTTACCCGTCTGACATGGAACGTCTGCGGAA
ACACCGTCTCGTCCGCTTACTTGGTGCGGCGCCCTGAGAGAGGACGGCTG
GCAGCGAATGGGGGGTAGGTGGGTTGTGTCTAGTCCCTATCTACACAGGC
AATCTGATGTCCTGTTATACTCTCTTAGAGTGTATGTAGATCGCGCTCTC
TGCCTGCTTGTTTGTTTGGTGGATATATGCCTCTTCAGCGCTGTGGATAT
GTCCTCGTCCCTTCACGCCCCCTCGCCCCCTTTTTGTTTACAGAAGCAGT
GCGAAAAAACGAACTTCTTCCTTTCGTGTGTTTAGCTGCAGGCCTTTGTC
CATAATAGATTCGATGTCCACGCCAGCCGTCTCGTCGAGGAGTAAATCTT
CTTCCACTGCCTGCATGTCCCTTTCAGCGTTTGTTTTTCGCCTTTTTAAA
GGTATAAATTTGACGCCATTCTTCCTTCTTTTTTGCCCACTGAATTAATT
AAGAAGAGAGCTGAAGAAAAGACATATAAACAAAAGCAAGTCAGAATAAC
AGACA

Coding sequence (CDS) from alignment at scaffold_20:345827..347981-

>mRNA_7600 ID=mRNA_7600|Name=jgi.p|Nanoce1779_2|599303|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_20:345827..347981- (Nannochloropsis oceanica)
ACGATCCAGTACGCTTGCCGGTTCCTGTGGTGGTACCATAAGAACCACAT
GCCTACGGACGAGAGCCGGGGCTCGCGATTTGAGAAGATGTTTCGTGCCT
CCCAGACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCTTTGAGGAGCTG
GAGAAGCTGCAAGCCTTGTCCTCCGACACCAAGACGCCCCAGTGGCGGCG
CCGGCTGATGATGCTGCGGGCGGCAGCCATGGCGGTCTACTGGTTCTACG
ACAACACGTGCTTTTTCATCATCGTCAAGCTCTCCACCTTCGACCAGCGT
ACAGCCATCGCTCGCGACGGCGCCGCGTGGTCATTGGCCAACCTGATCTC
CGTGGGCCTCGCGCTCTACGACCTGGACCAGAACAGCAAGGATCGGAGGC
GCCTTGAGGACAAGACGGTCGCACTGCTCAAGGCAAGGGCTGGCGCCGGC
AGGACTAGCACGGGCATCAGCCCCACCCACAGTGTGGCGGCTGGCTCGGC
CGCTGAGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTCGACGGTGGGGA
ACGGTGCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTGGAGCTAGCAAT
AGGAGTTTGGTGAATGGGAGCGGGAACGGCGTTGGCATTGACATCAACAA
GGAGCTTAGGAGCCGACAGGCCGTCACTTCCACCCCCACGACCAGCAGCA
GCAGCCAGCCACAGGGCGGGGACACTGTGGCGGATATCGACGTTGAAGAG
GTTCTAGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTTGACCTCGTGGG
TGACATGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTGCAACTCCCCCG
GATTCGACTTGCCACTGAGATTGCTTGGCTACCGGCTCCACGACGGCGTC
ATTGGTACGGCGGGCCTCATTTCGGCAATTTCGGCCGTGTACAAGGCTTA
CCCGTCTGACATGGAACGTCTGCGGAAACACCGTCTCGTCCGCTTACTTG
GTGCGGCGCCCTGAATGGCTCGGCGTATCACCATGTCATGTTGCACGGGG
GGCTCGTGCGGGGGTAGCAGCACCCTGGCCGGGGCTGCGGCGCCTTTCCT
CGTGCAAGTAGCCACGGGCGGTGCCGAGAGCTTGACGCGGCCCTTGGACG
TGGCTTACTGGCTGGGATTACAGGATTCCTTCACCACGAAAGTGCCCCTA
TCTCTCAAATCCGTCGTGGCACTCATCCGCACCCTGGAAGGCCGCGACAA
AGTCACCAAGACGATCCAGTACGCTTGCCGGTTCCTGTGGTGGTACCATA
AGAACCACATGCCTACGGACGAGAGCCGGGGCTCGCGATTTGAGAAGATG
TTTCGTGCCTCCCAGACTGCCCGTAAGTGTTTCCACCTCTTCCGTACCTT
TGAGGAGCTGGAGAAGCTGCAAGCCTTGTCCTCCGACACCAAGACGCCCC
AGTGGCGGCGCCGGCTGATGATGCTGCGGGCGGCAGCCATGGCGGTCTAC
TGGTTCTACGACAACACGTGCTTTTTCATCATCGTCAAGCTCTCCACCTT
CGACCAGCGTACAGCCATCGCTCGCGACGGCGCCGCGTGGTCATTGGCCA
ACCTGATCTCCGTGGGCCTCGCGCTCTACGACCTGGACCAGAACAGCAAG
GATCGGAGGCGCCTTGAGGACAAGACGGTCGCACTGCTCAAGGCAAGGGC
TGGCGCCGGCAGGACTAGCACGGGCATCAGCCCCACCCACAGTGTGGCGG
CTGGCTCGGCCGCTGAGGGCGAGATTGTGGGGGAGGGGTCGACGGCTTCG
ACGGTGGGGAACGGTGCGTCGGCGAAGGTGGCTGGCATTTGGAGTAGTGG
AGCTAGCAATAGGAGTTTGGTGAATGGGAGCGGGAACGGCGTTGGCATTG
ACATCAACAAGGAGCTTAGGAGCCGACAGGCCGTCACTTCCACCCCCACG
ACCAGCAGCAGCAGCCAGCCACAGGGCGGGGACACTGTGGCGGATATCGA
CGTTGAAGAGGTTCTAGAGGAGATGGCGAGGGCGAACGTGAAGCGCTTTG
ACCTCGTGGGTGACATGCTGCGGGCCTCGTGCGACTTTGTGGTGGCTTGC
AACTCCCCCGGATTCGACTTGCCACTGAGATTGCTTGGCTACCGGCTCCA
CGACGGCGTCATTGGTACGGCGGGCCTCATTTCGGCAATTTCGGCCGTGT
ACAAGGCTTACCCGTCTGACATGGAACGTCTGCGGAAACACCGTCTCGTC
CGCTTACTTGGTGCGGCGCCCTGAATGGCTCGGCGTATCACCATGTCATG
TTGCACGGGGGGCTCGTGCGGGGGTAGCAGCACCCTGGCCGGGGCTGCGG
CGCCTTTCCTCGTGCAAGTAGCCACGGGCGGTGCCGAGAGCTTGACGCGG
CCCTTGGACGTGGCTTACTGGCTGGGATTACAGGATTCCTTCACCACGAA
AGTGCCCCTATCTCTCAAATCCGTCGTGGCACTCATCCGCACCCTGGAAG
GCCGCGACAAAGTCACCAAG

Synonyms

Publications