jgi.p|Nanoce1779_2|574045, mRNA_760 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574045
Unique NamemRNA_760
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1389
Alignment locationscaffold_2:374381..375769 +

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Properties
Property NameValue
TranscriptId574131
TrackFilteredModels2
ProteinId574045
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:374381..375769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574045gene_760Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574045mRNA_760-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_760CDS_760Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_760 ID=mRNA_760|Name=jgi.p|Nanoce1779_2|574045|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ACAGCCATGTCCTCCTCGGAAACCTCCACCTCCACAGCTCCACCGCCTGC
CGACGCCAACGAGGGCTGTGTCGGCCCCACATCTGAGCACGCGGGAAAGG
CCAACGCCTGCGCGGGGTGCCCGAATCAGAAAGTATGTGCGTCAGGCGAG
GCTAAGCGGGTCGACCCTGCACTGGCCGTCGTCCAAGACAAGCTAGCTCA
AGTAAAGCACAAGCTGGTGGTGCTCTCAGGGAAGGGTGGTGTCGGAAAGA
CGACTTTTGCCTGTCAGCTAGCGTTTAGTCTGGCGCAGCAGCATGGCTTG
CAAGTGGGGTTGTTGGACGTGGATATTTGTGGGCCGAGCGTGCCGCGTGT
CATGGGATTGAACGGACAAGAAGTGCACCAAAGTGCGGCGGGCTGGTCCC
CTGTCTACGTAGACGACAATCTAGGAGTCATGTCTATTGGTTTTATGCTC
CCTAATCAGGATGATGCTGTCATATGGCGGGGGCCGCGGAAAAATGGGTT
GATCAAACAGTTTTTGACCGATGTAGACTGGGGAGAGTTGGATTATCTTA
TCATTGACACTCCACCTGGGACGTCTGACGAACATCTTTCCATCGTGCAG
TATTTGAAGCAAGGGTGTGGGGTGGATGGTGCTGTGGTCGTGACGACGCC
ACAGGAAGTGGCCATGATGGACGTGCGTAAGGAGCTGAATTTTTGCAAGA
AGACGGGGTTGAGGGTGATAGGGGTTGTGGAAAATATGAGCGGGCTCACT
GTTCCTCTGAAAGCCTTGCGGTTTTGGGGCGGACCTCTGACAGCTAGCAC
TGATGATGTGAGTGGCCAAGATACCAGTAGGAACAAGCCAGTGGTGGCGG
CCGTGGCACGGGAGGACAAGACAGCCGCAGTGCTGAAGGCACTTAGGCAG
ATTGATCATTCCTTGCTCGACTGCCTGGTGGAAGCGGATGTTTTCCCTGC
ATTTGGTAGTGGACCACAAGGGATGGCCGCGGCATTCGATGTTCCTTTTT
TGGGAAAATTGCCCTTGGATCCTGATTTGTTGCGGGCCTGTGAGGAAGGT
GTGTCGTTGGCCGAGAAGGCGCCTGAGTCCTCGGCGGTGCTGGCGTTGGA
AAATATCGTGCGGGGTGTTTTGGATGGGACTAGGCTAGAGGTAGGGAAGG
AGAGGGATGTAGTTGGTGATGGAAAGGGAGGGGAGGCGCAGCTGTGAGGG
GTGATGTGTAAAAAGAGGTGGACTGTATTGAGCGTAGTCGTATATGCGCA
GGTACGTTGTGAAAGAAATGGTGCGGAAAGAAGACGATTTAGATCTAGAT
TTCGGATTGAAAACTATTCTTTGGCTTGCTATTATCTTGATTTATCGATG
CAAAAAAAAGGAATGAACCTCCTCCCAGGCTTTTCGTAT
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protein sequence of jgi.p|Nanoce1779_2|574045

>mRNA_760-protein ID=mRNA_760-protein|Name=jgi.p|Nanoce1779_2|574045|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MSSSETSTSTAPPPADANEGCVGPTSEHAGKANACAGCPNQKVCASGEAK
RVDPALAVVQDKLAQVKHKLVVLSGKGGVGKTTFACQLAFSLAQQHGLQV
GLLDVDICGPSVPRVMGLNGQEVHQSAAGWSPVYVDDNLGVMSIGFMLPN
QDDAVIWRGPRKNGLIKQFLTDVDWGELDYLIIDTPPGTSDEHLSIVQYL
KQGCGVDGAVVVTTPQEVAMMDVRKELNFCKKTGLRVIGVVENMSGLTVP
LKALRFWGGPLTASTDDVSGQDTSRNKPVVAAVAREDKTAAVLKALRQID
HSLLDCLVEADVFPAFGSGPQGMAAAFDVPFLGKLPLDPDLLRACEEGVS
LAEKAPESSAVLALENIVRGVLDGTRLEVGKERDVVGDGKGGEAQL*
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mRNA from alignment at scaffold_2:374381..375769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_760 ID=mRNA_760|Name=jgi.p|Nanoce1779_2|574045|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at scaffold_2:374381..375769+ (Nannochloropsis oceanica)
ACAGCCATGTCCTCCTCGGAAACCTCCACCTCCACAGCTCCACCGCCTGC
CGACGCCAACGAGGGCTGTGTCGGCCCCACATCTGAGCACGCGGGAAAGG
CCAACGCCTGCGCGGGGTGCCCGAATCAGAAAGTATGTGCGTCAGGCGAG
GCTAAGCGGGTCGACCCTGCACTGGCCGTCGTCCAAGACAAGCTAGCTCA
AGTAAAGCACAAGCTGGTGGTGCTCTCAGGGAAGGGTGGTGTCGGAAAGA
CGACTTTTGCCTGTCAGCTAGCGTTTAGTCTGGCGCAGCAGCATGGCTTG
CAAGTGGGGTTGTTGGACGTGGATATTTGTGGGCCGAGCGTGCCGCGTGT
CATGGGATTGAACGGACAAGAAGTGCACCAAAGTGCGGCGGGCTGGTCCC
CTGTCTACGTAGACGACAATCTAGGAGTCATGTCTATTGGTTTTATGCTC
CCTAATCAGGATGATGCTGTCATATGGCGGGGGCCGCGGAAAAATGGGTT
GATCAAACAGTTTTTGACCGATGTAGACTGGGGAGAGTTGGATTATCTTA
TCATTGACACTCCACCTGGGACGTCTGACGAACATCTTTCCATCGTGCAG
TATTTGAAGCAAGGGTGTGGGGTGGATGGTGCTGTGGTCGTGACGACGCC
ACAGGAAGTGGCCATGATGGACGTGCGTAAGGAGCTGAATTTTTGCAAGA
AGACGGGGTTGAGGGTGATAGGGGTTGTGGAAAATATGAGCGGGCTCACT
GTTCCTCTGAAAGCCTTGCGGTTTTGGGGCGGACCTCTGACAGCTAGCAC
TGATGATGTGAGTGGCCAAGATACCAGTAGGAACAAGCCAGTGGTGGCGG
CCGTGGCACGGGAGGACAAGACAGCCGCAGTGCTGAAGGCACTTAGGCAG
ATTGATCATTCCTTGCTCGACTGCCTGGTGGAAGCGGATGTTTTCCCTGC
ATTTGGTAGTGGACCACAAGGGATGGCCGCGGCATTCGATGTTCCTTTTT
TGGGAAAATTGCCCTTGGATCCTGATTTGTTGCGGGCCTGTGAGGAAGGT
GTGTCGTTGGCCGAGAAGGCGCCTGAGTCCTCGGCGGTGCTGGCGTTGGA
AAATATCGTGCGGGGTGTTTTGGATGGGACTAGGCTAGAGGTAGGGAAGG
AGAGGGATGTAGTTGGTGATGGAAAGGGAGGGGAGGCGCAGCTGTGAGGG
GTGATGTGTAAAAAGAGGTGGACTGTATTGAGCGTAGTCGTATATGCGCA
GGTACGTTGTGAAAGAAATGGTGCGGAAAGAAGACGATTTAGATCTAGAT
TTCGGATTGAAAACTATTCTTTGGCTTGCTATTATCTTGATTTATCGATG
CAAAAAAAAGGAATGAACCTCCTCCCAGGCTTTTCGTAT
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Coding sequence (CDS) from alignment at scaffold_2:374381..375769+

>mRNA_760 ID=mRNA_760|Name=jgi.p|Nanoce1779_2|574045|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_2:374381..375769+ (Nannochloropsis oceanica)
ATGTCCTCCTCGGAAACCTCCACCTCCACAGCTCCACCGCCTGCCGACGC
CAACGAGGGCTGTGTCGGCCCCACATCTGAGCACGCGGGAAAGGCCAACG
CCTGCGCGGGGTGCCCGAATCAGAAAGTATGTGCGTCAGGCGAGGCTAAG
CGGGTCGACCCTGCACTGGCCGTCGTCCAAGACAAGCTAGCTCAAGTAAA
GCACAAGCTGGTGGTGCTCTCAGGGAAGGGTGGTGTCGGAAAGACGACTT
TTGCCTGTCAGCTAGCGTTTAGTCTGGCGCAGCAGCATGGCTTGCAAGTG
GGGTTGTTGGACGTGGATATTTGTGGGCCGAGCGTGCCGCGTGTCATGGG
ATTGAACGGACAAGAAGTGCACCAAAGTGCGGCGGGCTGGTCCCCTGTCT
ACGTAGACGACAATCTAGGAGTCATGTCTATTGGTTTTATGCTCCCTAAT
CAGGATGATGCTGTCATATGGCGGGGGCCGCGGAAAAATGGGTTGATCAA
ACAGTTTTTGACCGATGTAGACTGGGGAGAGTTGGATTATCTTATCATTG
ACACTCCACCTGGGACGTCTGACGAACATCTTTCCATCGTGCAGTATTTG
AAGCAAGGGTGTGGGGTGGATGGTGCTGTGGTCGTGACGACGCCACAGGA
AGTGGCCATGATGGACGTGCGTAAGGAGCTGAATTTTTGCAAGAAGACGG
GGTTGAGGGTGATAGGGGTTGTGGAAAATATGAGCGGGCTCACTGTTCCT
CTGAAAGCCTTGCGGTTTTGGGGCGGACCTCTGACAGCTAGCACTGATGA
TGTGAGTGGCCAAGATACCAGTAGGAACAAGCCAGTGGTGGCGGCCGTGG
CACGGGAGGACAAGACAGCCGCAGTGCTGAAGGCACTTAGGCAGATTGAT
CATTCCTTGCTCGACTGCCTGGTGGAAGCGGATGTTTTCCCTGCATTTGG
TAGTGGACCACAAGGGATGGCCGCGGCATTCGATGTTCCTTTTTTGGGAA
AATTGCCCTTGGATCCTGATTTGTTGCGGGCCTGTGAGGAAGGTGTGTCG
TTGGCCGAGAAGGCGCCTGAGTCCTCGGCGGTGCTGGCGTTGGAAAATAT
CGTGCGGGGTGTTTTGGATGGGACTAGGCTAGAGGTAGGGAAGGAGAGGG
ATGTAGTTGGTGATGGAAAGGGAGGGGAGGCGCAGCTGTGA
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Synonyms
Publications