jgi.p|Nanoce1779_2|599302, mRNA_7599 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599302
Unique NamemRNA_7599
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1592
Alignment locationscaffold_20:344235..345826 +

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Properties
Property NameValue
TranscriptId599388
TrackFilteredModels2
ProteinId599302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:344235..345826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599302gene_7599Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599302mRNA_7599-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7599CDS_7599Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7599 ID=mRNA_7599|Name=jgi.p|Nanoce1779_2|599302|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp
AGCACAGAATAATTCGGCAACCATAGAGTACATTAAACTCGTACAAGGCC
CACCCTTGTCCGTCTTTGTTCATCCAGGGCTGGAAATCAAGGATGGTCAC
GAGGGACAGCGAGGCATATTTGTCAAGCATGACATACCGTGCGGGGCAGA
ATTGGTCAGGGTGCCGTGGCTTTCCCTTTTTACCCTTGATAGCTTGCGGA
AGGACGATAGCCAAGCACTGCGCAGTCTGATGTCTGATTCTTCAAAATTG
CGGGAAGACGATGTACTTAGTATTGCCCTGCTCTACGAGTGCTTTGGGCG
TCCATCTGAGGCGCCTTCTAAATGGGCTACGCACATCGAGATGTTGCCCA
CTGGGCGGCTTCTTAATTCCATTAACTTGTCGCCGACGGCCCTCGAACAC
TTAGAAGGGTCCGCCTTGCATATCCTCGCTTGTCGTCAGCAAGAGCAAGT
TATTTCTGACTTTGAAGAGTTGAGTGCCTCGCCGCTGATGGTGGGGGACA
CATATTTGTCCAGTTGCGAATGGTGGAGCTCGAAAAACTACCGTTGGGCA
TTGGCGCAGATCCACAGTCGATTTGTGAGTGTCGCAACAGAGCCAGGGGA
GCCTCCACGAAAGGCAATGGCCCCCTTTTTTGACCTCTTCAATCATTCGT
CCGCGACACCATCTGCAATCTCACACAGCTTTGTTGCGGGAAATAGAGCC
GTTGGCAGTAAAAATGTGGCTGCTAGCGCCGATGACGAGAATGAAGGCTC
CCTGGTGGTCGTGGCAAGGCGGTCTCTTGTAGAAGGCGAGGAGGCGTGCT
TAAATTACGGCCCCCTTGGAAATCTCCGACTGCTCCAGCTGTATGGGTTT
GTCCTCCCTGACAATCATTTCGATGCCCTTGATATATGGGCAAGGATGGA
CCCGACAGCACCTGAATTCTCGGTCAAAGATCGTGCACTCGCTCGCTTGG
CTCTCCGGTCGCCTTTCGCCCTGACCAGGCAGCCCCCCGTCCTCTCCCCC
TCTCTCCTCGCGGCAATCCGCATTCAGTGTGCTAAAGGGTCGGAGATGGC
ATGTCTGGAAAATGCTTTGAAGGGGCCACTAAGTGAAGCCAACGAGAGGG
AGACACTGGCGGCCCTGGAAATGGCGCTGACTATCATGCGGGAGGCTTTG
CCCGTGGCCAGGGAGGAGAAAGAGTGGGGGGAGGAGGAGTTGCAAGAGAG
GGGTGGAGAAGAGAACGTGGAAGCTCAGCTTGTGCGCACATATTTGGAAA
GCGAGCGCGCTCTCTTGACGCAGGGCCTCGAAGCTGTGGCGGTACTGCAG
AGGCAGAAGGCGTACTCTAGTGGGATGGAATATTGAAGCATTAACGAAAG
AAGGAACGAAACCGGTGCCGCTTTCTCGGGACCTCTTTTGTGGTGTCGGA
TGTTATCACCTGCCTACATGTCTGCATGCGTGCCAGGATGTCGTGATAAC
GATGCAGAGAAGAGGAGAGAAACGCGTGACCGGATCACGACAGGCACACG
ATTTCACCTTTCCCCACAGGACATTGCTTGCATTGTTAAGGAAAGTGGCG
AGACAAGTAAAAAGAAAGGGGTTACTCCTATGACCGGCTTTT
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protein sequence of jgi.p|Nanoce1779_2|599302

>mRNA_7599-protein ID=mRNA_7599-protein|Name=jgi.p|Nanoce1779_2|599302|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MSDSSKLREDDVLSIALLYECFGRPSEAPSKWATHIEMLPTGRLLNSINL
SPTALEHLEGSALHILACRQQEQVISDFEELSASPLMVGDTYLSSCEWWS
SKNYRWALAQIHSRFVSVATEPGEPPRKAMAPFFDLFNHSSATPSAISHS
FVAGNRAVGSKNVAASADDENEGSLVVVARRSLVEGEEACLNYGPLGNLR
LLQLYGFVLPDNHFDALDIWARMDPTAPEFSVKDRALARLALRSPFALTR
QPPVLSPSLLAAIRIQCAKGSEMACLENALKGPLSEANERETLAALEMAL
TIMREALPVAREEKEWGEEELQERGGEENVEAQLVRTYLESERALLTQGL
EAVAVLQRQKAYSSGMEY*
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mRNA from alignment at scaffold_20:344235..345826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7599 ID=mRNA_7599|Name=jgi.p|Nanoce1779_2|599302|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp|location=Sequence derived from alignment at scaffold_20:344235..345826+ (Nannochloropsis oceanica)
AGCACAGAATAATTCGGCAACCATAGAGTACATTAAACTCGTACAAGGCC
CACCCTTGTCCGTCTTTGTTCATCCAGGGCTGGAAATCAAGGATGGTCAC
GAGGGACAGCGAGGCATATTTGTCAAGCATGACATACCGTGCGGGGCAGA
ATTGGTCAGGGTGCCGTGGCTTTCCCTTTTTACCCTTGATAGCTTGCGGA
AGGACGATAGCCAAGCACTGCGCAGTCTGATGTCTGATTCTTCAAAATTG
CGGGAAGACGATGTACTTAGTATTGCCCTGCTCTACGAGTGCTTTGGGCG
TCCATCTGAGGCGCCTTCTAAATGGGCTACGCACATCGAGATGTTGCCCA
CTGGGCGGCTTCTTAATTCCATTAACTTGTCGCCGACGGCCCTCGAACAC
TTAGAAGGGTCCGCCTTGCATATCCTCGCTTGTCGTCAGCAAGAGCAAGT
TATTTCTGACTTTGAAGAGTTGAGTGCCTCGCCGCTGATGGTGGGGGACA
CATATTTGTCCAGTTGCGAATGGTGGAGCTCGAAAAACTACCGTTGGGCA
TTGGCGCAGATCCACAGTCGATTTGTGAGTGTCGCAACAGAGCCAGGGGA
GCCTCCACGAAAGGCAATGGCCCCCTTTTTTGACCTCTTCAATCATTCGT
CCGCGACACCATCTGCAATCTCACACAGCTTTGTTGCGGGAAATAGAGCC
GTTGGCAGTAAAAATGTGGCTGCTAGCGCCGATGACGAGAATGAAGGCTC
CCTGGTGGTCGTGGCAAGGCGGTCTCTTGTAGAAGGCGAGGAGGCGTGCT
TAAATTACGGCCCCCTTGGAAATCTCCGACTGCTCCAGCTGTATGGGTTT
GTCCTCCCTGACAATCATTTCGATGCCCTTGATATATGGGCAAGGATGGA
CCCGACAGCACCTGAATTCTCGGTCAAAGATCGTGCACTCGCTCGCTTGG
CTCTCCGGTCGCCTTTCGCCCTGACCAGGCAGCCCCCCGTCCTCTCCCCC
TCTCTCCTCGCGGCAATCCGCATTCAGTGTGCTAAAGGGTCGGAGATGGC
ATGTCTGGAAAATGCTTTGAAGGGGCCACTAAGTGAAGCCAACGAGAGGG
AGACACTGGCGGCCCTGGAAATGGCGCTGACTATCATGCGGGAGGCTTTG
CCCGTGGCCAGGGAGGAGAAAGAGTGGGGGGAGGAGGAGTTGCAAGAGAG
GGGTGGAGAAGAGAACGTGGAAGCTCAGCTTGTGCGCACATATTTGGAAA
GCGAGCGCGCTCTCTTGACGCAGGGCCTCGAAGCTGTGGCGGTACTGCAG
AGGCAGAAGGCGTACTCTAGTGGGATGGAATATTGAAGCATTAACGAAAG
AAGGAACGAAACCGGTGCCGCTTTCTCGGGACCTCTTTTGTGGTGTCGGA
TGTTATCACCTGCCTACATGTCTGCATGCGTGCCAGGATGTCGTGATAAC
GATGCAGAGAAGAGGAGAGAAACGCGTGACCGGATCACGACAGGCACACG
ATTTCACCTTTCCCCACAGGACATTGCTTGCATTGTTAAGGAAAGTGGCG
AGACAAGTAAAAAGAAAGGGGTTACTCCTATGACCGGCTTTT
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Coding sequence (CDS) from alignment at scaffold_20:344235..345826+

>mRNA_7599 ID=mRNA_7599|Name=jgi.p|Nanoce1779_2|599302|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_20:344235..345826+ (Nannochloropsis oceanica)
ATGTCTGATTCTTCAAAATTGCGGGAAGACGATGTACTTAGTATTGCCCT
GCTCTACGAGTGCTTTGGGCGTCCATCTGAGGCGCCTTCTAAATGGGCTA
CGCACATCGAGATGTTGCCCACTGGGCGGCTTCTTAATTCCATTAACTTG
TCGCCGACGGCCCTCGAACACTTAGAAGGGTCCGCCTTGCATATCCTCGC
TTGTCGTCAGCAAGAGCAAGTTATTTCTGACTTTGAAGAGTTGAGTGCCT
CGCCGCTGATGGTGGGGGACACATATTTGTCCAGTTGCGAATGGTGGAGC
TCGAAAAACTACCGTTGGGCATTGGCGCAGATCCACAGTCGATTTGTGAG
TGTCGCAACAGAGCCAGGGGAGCCTCCACGAAAGGCAATGGCCCCCTTTT
TTGACCTCTTCAATCATTCGTCCGCGACACCATCTGCAATCTCACACAGC
TTTGTTGCGGGAAATAGAGCCGTTGGCAGTAAAAATGTGGCTGCTAGCGC
CGATGACGAGAATGAAGGCTCCCTGGTGGTCGTGGCAAGGCGGTCTCTTG
TAGAAGGCGAGGAGGCGTGCTTAAATTACGGCCCCCTTGGAAATCTCCGA
CTGCTCCAGCTGTATGGGTTTGTCCTCCCTGACAATCATTTCGATGCCCT
TGATATATGGGCAAGGATGGACCCGACAGCACCTGAATTCTCGGTCAAAG
ATCGTGCACTCGCTCGCTTGGCTCTCCGGTCGCCTTTCGCCCTGACCAGG
CAGCCCCCCGTCCTCTCCCCCTCTCTCCTCGCGGCAATCCGCATTCAGTG
TGCTAAAGGGTCGGAGATGGCATGTCTGGAAAATGCTTTGAAGGGGCCAC
TAAGTGAAGCCAACGAGAGGGAGACACTGGCGGCCCTGGAAATGGCGCTG
ACTATCATGCGGGAGGCTTTGCCCGTGGCCAGGGAGGAGAAAGAGTGGGG
GGAGGAGGAGTTGCAAGAGAGGGGTGGAGAAGAGAACGTGGAAGCTCAGC
TTGTGCGCACATATTTGGAAAGCGAGCGCGCTCTCTTGACGCAGGGCCTC
GAAGCTGTGGCGGTACTGCAGAGGCAGAAGGCGTACTCTAGTGGGATGGA
ATATTGA
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Synonyms
Publications