jgi.p|Nanoce1779_2|599301, mRNA_7598 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599301
Unique NamemRNA_7598
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3689
Alignment locationscaffold_20:340570..344258 -

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Properties
Property NameValue
TranscriptId599387
TrackFilteredModels2
ProteinId599301
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:340570..344258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599301gene_7598Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599301mRNA_7598-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7598CDS_7598Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7598 ID=mRNA_7598|Name=jgi.p|Nanoce1779_2|599301|organism=Nannochloropsis oceanica|type=mRNA|length=3689bp
ATGGTTGCCGAATTATTCTGTGCTTTGAGAATTGTACATCAAAGAGTGAG
GCGTTTGAGTTGGGAGGTCCTGCCACAGGACTGCGCATCCAGCTTTTTTT
TTTAATTATCTAGTCAATTATTTGTCGTCTCGTCCTTAAACTATGCACGA
CTATCAGTCGTCGTAGTCGTCCTCAGTGGAAATCATGCACGCCTACTAGT
CGATGGGAATCATGCACAACTGTGACATATATCGTAATGATGAGTCAAGT
CATGCACGCCATTTTCGCAGGACAGTCGTCCAACGAGAGATCTCTCTATC
TCTCTATCTCCATGGATCCACAGGGCGCATATCTCGCTCGCTGCCACTGC
GCTTATATCATCACTGTCTCTTTCTCCCTCTCCTTTATCTTTTTCTAAGT
TCTTCTGGAGGACTTTCAAATTTCCGAGACGAGATGGCTCTCACAGACTG
ACACCTCCTTCGCACCAATCAACTGCACCCATATGTTATAGCTAACATGC
TCCACCAGCGGAAAGCGGCGATGGCAGCCGCCGCTGCCGGCGCGTGCCGC
AGCATTCGCAGCGTCGCATCGACCTTGCCCTCCTCTTCGCTCTCGACACG
CATCTATTTTATGGACCACCCGCCGCTCCACACCGCGCGCCCCGCGTCTA
TGGCATCCTCTTCTTCGTCGTCTAATGCTTGGCTGCCAGCCGCGCTGGTG
GCCGTGGCAACTGCTTCCGTCCTGACGTCGCTGACAGAGGCAGCGCCACC
AACAGCGGCGGCGTCGGCACCGGACAGCAGCGACGACACCAAAGATAATT
CAAAGGAAAATGTGTTGCCTATGCGAGAGGTCATGGCATTGATCGAAAGC
CGGCTGAAGCCCTTTCGCACGGAGCGCTTCCTTTCTTCTCGACCTCGCAG
AAGTAGCAGAAGCGGCAGCGGTACATTTCCTCCTACCGTCGGGGAGCACG
ACCTCCCCACCGTTGCCAGCAAAACTTTCCCCAAAATCGCCGTGTTGAGC
AAGGGCAAGGGCGTGGATGAGCCCTACACCATCGAAGTTCCCTTGCCGCC
AACGGCCAGTAGGGAAACAAATGTGCTCGCAGCCTGCCTACATGCCTTGC
AGAAGAAGGGGCACACGCTCACGTTCCACACGGGCTTGACCACAAACAAT
GGAACCAGCCTTTCCTTCGTCTTCGGCGACCAGTCCGGATCCGTCCTTCT
GACCTCTTCGTCGGCTGTCGCGGCGCCATCATCGTCGACTGAGGTGATGC
CATCGACAGGGACAGGCAAATCAAGCCTCCTTCTGTACAAGACCAAGGGC
TTTACAGAAGCGGACGTAGACGCGGTTGTTGATTCGTACATCATGGCTTG
GAGGAGCAGCCCAGACGATCAGCTCACCGGCTCATTCCTCAGCAATTTTA
CGGATGTCCTAGATGCGCTCCGTATTGGTGGCGGCGGTGGTGGCAAATAC
GCATTTGATCACGAGCAGGACGTCCCTTACTCGTCCCCTCAGCGCCCCGT
CCCACCACATTCCCCCTTTTCCCGGCCGTCCTCGACCCGCGGGGAAAGCA
TAGTTGAGCGAGGCGGCGGTATCGGGAGCGGGCAGAATGGCACTGCTGTG
ATGGGAGAAAACGACCCGGTGTCCAGGCTAAAGAAGCTTGGCGCGGAGGT
GTTCGAAAAGGCGACGGAAGAGGAACTGGACTGGACTTGCCTAGCGGGAT
ACGAGAGCATCAAGGCTGAGGTAGAGGATACAGTAGTCATGGCCTTGCAG
CACGCCGAGGCCTACGATGCTATTGCCCGTCAGACCCGCGAGCGTTATGA
GAGTAATCGCCCAAGGGCCGTTCTTTTTGAGGGCCCTCCAGGGACGGGCA
AGACATTGACCGCTCGCATCATTGCTAGCCGTACGGAGGTGCCGTTGGTC
TTCATTTCAACAGAGCGCGTCCTCAGTAAATGGTATGGCGATTCGGAGAA
GAATTTGGCGAAGGTTTTCGAGGCATGCAAAGAACTGGGAGGGGCTATCA
TCTTTATTGACGAAGTAGACGCGTTGGCTGCCAGCCGAGACACTAACATG
CACGAGGCTACGAGGCGTCTCCTTAGCGTCATACTGCAGAGTATCGAGGG
CTTTAGAGGCCGCAACAAAAACGTGCTCATATGCGCCACCAACCGCAAGC
AAGACCTCGATTCGGCCTTACTTTCTCGATTTGACGTATCCATCAAGTTT
GACCTGCCCACATGCCCTGCCCGTCAGGCGATCTTTGCCCGGTACGCAAA
ACATTTGGCCGGGAATGAGCTAGCCCGTCTGGCGGAGGCTTCCGAAGCCT
ACTCCTGCAGGGATATTAAGGAGGTGTGTGAAAATACGGAGCGGAAGTGG
GCTTCCAAAACCATTCGTGGACAAGCGGACGGCCTCACACCGCCACTCAA
GGAGTACCTCAATCAACTCAAAGCGCAGACCCTTTCCGATCATCAAACCC
TGCCTCATAACGTTTAAAATACGAGATGGCAAGTGAAGGCAAAATTTTGG
GATGGACAAATCAAGACATAGACAATGTGCATACTTAAAAAAAAAAACCC
ACAAAATTATACACGAGGTCTGATTACTTCACTTCTCGTCTATGGCTGCT
TGTGATGAGCTTTTTTGATGAGTGCATACTCCCCCTTCTAAAAAAACTCC
TTCCCCCAAACTGAGATATCTAGTCGTAATACTTCGAGAGGGAGTAAGTG
CTGCTCGGATAACGGTGCATTTGAATACGGCACGGATTCTTATAATGAAG
TGAACGTCTTGATTCTTGAGGGCCTTCTCAAAGAGTCCGCCAAGTTGGGG
CCACTGTAAATATAAAGAAAATCTCGCGTGATCATTTTCGCAGAGCTATC
AGGCACATTTCCATGAAATTTCAAATCCGCATGACATTTTTGCACACGCC
AGTCATAGACGACGAACACATGCTTCTTTTCACACCTGATTACCATTGAG
CTAAAGAGCGACTCACATTTCCGCCTCAGTTTCTCGGATGACAGCTCTCT
CACACTATACAAGAAGCAATACGGTGCGCCATAACGACGACATATAAGAC
AATACGGTGCGCCATACGGAAGCAGGCAGCACTGGCCGATTCTTTAAATT
AAGGACAAGATAAGGCTGAACTCATCACCTGGGATCTGAATGCTGAAAAA
CCGATAAAAAGTGTCTTTTTGGTCGTATTCCGACTTACGTGGAAGTTAAA
TTGAAAATTTAATCCTGGAACCATTGCCATTCTTCCAGAATTCGAGTGTT
GCTAGTTTTCCGGTGTCTTATATGGAAAAAATCGTGTTGTCCTTATTTTT
GATGATTCTGAAAGAAATTAAGTGCAGAGGTAAAAGAAAGAAGACGATGA
GCAACAAGCGGACTTCATCCGTTTCCTGCTTCCTGCACTCACTCTTTCTT
CCTTTTATGGTGAATAACTCACCATAAAAAGGTGAAATCCTTGGTTCATA
GTAGACTGTAAGCGACTGTCTGACGAAATGGTAATAAACCACGCCCCGAT
GCCTCAAATGCGCTTCGCCATGATAGTGAGTGTAGGGAAGAAGCACGGGC
AACCCCATAGCAGTGCCATAAAGACCGCAGCATAGCAACAACAGCAGCAG
CAAAAGCGGCTGCGGCACAAAGAGCAAGATATGATGATGATGATGATGAT
GATGATGGTGATGATGAGGAGGAGGAGGAGGAGAAGGAG
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protein sequence of jgi.p|Nanoce1779_2|599301

>mRNA_7598-protein ID=mRNA_7598-protein|Name=jgi.p|Nanoce1779_2|599301|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MLHQRKAAMAAAAAGACRSIRSVASTLPSSSLSTRIYFMDHPPLHTARPA
SMASSSSSSNAWLPAALVAVATASVLTSLTEAAPPTAAASAPDSSDDTKD
NSKENVLPMREVMALIESRLKPFRTERFLSSRPRRSSRSGSGTFPPTVGE
HDLPTVASKTFPKIAVLSKGKGVDEPYTIEVPLPPTASRETNVLAACLHA
LQKKGHTLTFHTGLTTNNGTSLSFVFGDQSGSVLLTSSSAVAAPSSSTEV
MPSTGTGKSSLLLYKTKGFTEADVDAVVDSYIMAWRSSPDDQLTGSFLSN
FTDVLDALRIGGGGGGKYAFDHEQDVPYSSPQRPVPPHSPFSRPSSTRGE
SIVERGGGIGSGQNGTAVMGENDPVSRLKKLGAEVFEKATEEELDWTCLA
GYESIKAEVEDTVVMALQHAEAYDAIARQTRERYESNRPRAVLFEGPPGT
GKTLTARIIASRTEVPLVFISTERVLSKWYGDSEKNLAKVFEACKELGGA
IIFIDEVDALAASRDTNMHEATRRLLSVILQSIEGFRGRNKNVLICATNR
KQDLDSALLSRFDVSIKFDLPTCPARQAIFARYAKHLAGNELARLAEASE
AYSCRDIKEVCENTERKWASKTIRGQADGLTPPLKEYLNQLKAQTLSDHQ
TLPHNV*
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mRNA from alignment at scaffold_20:340570..344258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7598 ID=mRNA_7598|Name=jgi.p|Nanoce1779_2|599301|organism=Nannochloropsis oceanica|type=mRNA|length=3689bp|location=Sequence derived from alignment at scaffold_20:340570..344258- (Nannochloropsis oceanica)
ATGGTTGCCGAATTATTCTGTGCTTTGAGAATTGTACATCAAAGAGTGAG GCGTTTGAGTTGGGAGGTCCTGCCACAGGACTGCGCATCCAGCTTTTTTT TTTAATTATCTAGTCAATTATTTGTCGTCTCGTCCTTAAACTATGCACGA CTATCAGTCGTCGTAGTCGTCCTCAGTGGAAATCATGCACGCCTACTAGT CGATGGGAATCATGCACAACTGTGACATATATCGTAATGATGAGTCAAGT CATGCACGCCATTTTCGCAGGACAGTCGTCCAACGAGAGATCTCTCTATC TCTCTATCTCCATGGATCCACAGGGCGCATATCTCGCTCGCTGCCACTGC GCTTATATCATCACTGTCTCTTTCTCCCTCTCCTTTATCTTTTTCTAAGT TCTTCTGGAGGACTTTCAAATTTCCGAGACGAGATGGCTCTCACAGACTG ACACCTCCTTCGCACCAATCAACTGCACCCATATGTTATAGCTAACATGC TCCACCAGCGGAAAGCGGCGATGGCAGCCGCCGCTGCCGGCGCGTGCCGC AGCATTCGCAGCGTCGCATCGACCTTGCCCTCCTCTTCGCTCTCGACACG CATCTATTTTATGGACCACCCGCCGCTCCACACCGCGCGCCCCGCGTCTA TGGCATCCTCTTCTTCGTCGTCTAATGCTTGGCTGCCAGCCGCGCTGGTG GCCGTGGCAACTGCTTCCGTCCTGACGTCGCTGACAGAGGCAGCGCCACC AACAGCGGCGGCGTCGGCACCGGACAGCAGCGACGACACCAAAGATAATT CAAAGGAAAATGTGTTGCCTATGCGAGAGGTCATGGCATTGATCGAAAGC CGGCTGAAGCCCTTTCGCACGGAGCGCTTCCTTTCTTCTCGACCTCGCAG AAGTAGCAGAAGCGGCAGCGGTACATTTCCTCCTACCGTCGGGGAGCACG ACCTCCCCACCGTTGCCAGCAAAACTTTCCCCAAAATCGCCGTGTTGAGC AAGGGCAAGGGCGTGGATGAGCCCTACACCATCGAAGTTCCCTTGCCGCC AACGGCCAGTAGGGAAACAAATGTGCTCGCAGCCTGCCTACATGCCTTGC AGAAGAAGGGGCACACGCTCACGTTCCACACGGGCTTGACCACAAACAAT GGAACCAGCCTTTCCTTCGTCTTCGGCGACCAGTCCGGATCCGTCCTTCT GACCTCTTCGTCGGCTGTCGCGGCGCCATCATCGTCGACTGAGGTGATGC CATCGACAGGGACAGGCAAATCAAGCCTCCTTCTGTACAAGACCAAGGGC TTTACAGAAGCGGACGTAGACGCGGTTGTTGATTCGTACATCATGGCTTG GAGGAGCAGCCCAGACGATCAGCTCACCGGCTCATTCCTCAGCAATTTTA CGGATGTCCTAGATGCGCTCCGTATTGGTGGCGGCGGTGGTGGCAAATAC GCATTTGATCACGAGCAGGACGTCCCTTACTCGTCCCCTCAGCGCCCCGT CCCACCACATTCCCCCTTTTCCCGGCCGTCCTCGACCCGCGGGGAAAGCA TAGTTGAGCGAGGCGGCGGTATCGGGAGCGGGCAGAATGGCACTGCTGTG ATGGGAGAAAACGACCCGGTGTCCAGGCTAAAGAAGCTTGGCGCGGAGGT GTTCGAAAAGGCGACGGAAGAGGAACTGGACTGGACTTGCCTAGCGGGAT ACGAGAGCATCAAGGCTGAGGTAGAGGATACAGTAGTCATGGCCTTGCAG CACGCCGAGGCCTACGATGCTATTGCCCGTCAGACCCGCGAGCGTTATGA GAGTAATCGCCCAAGGGCCGTTCTTTTTGAGGGCCCTCCAGGGACGGGCA AGACATTGACCGCTCGCATCATTGCTAGCCGTACGGAGGTGCCGTTGGTC TTCATTTCAACAGAGCGCGTCCTCAGTAAATGGTATGGCGATTCGGAGAA GAATTTGGCGAAGGTTTTCGAGGCATGCAAAGAACTGGGAGGGGCTATCA TCTTTATTGACGAAGTAGACGCGTTGGCTGCCAGCCGAGACACTAACATG CACGAGGCTACGAGGCGTCTCCTTAGCGTCATACTGCAGAGTATCGAGGG CTTTAGAGGCCGCAACAAAAACGTGCTCATATGCGCCACCAACCGCAAGC AAGACCTCGATTCGGCCTTACTTTCTCGATTTGACGTATCCATCAAGTTT GACCTGCCCACATGCCCTGCCCGTCAGGCGATCTTTGCCCGGTACGCAAA ACATTTGGCCGGGAATGAGCTAGCCCGTCTGGCGGAGGCTTCCGAAGCCT ACTCCTGCAGGGATATTAAGGAGGTGTGTGAAAATACGGAGCGGAAGTGG GCTTCCAAAACCATTCGTGGACAAGCGGACGGCCTCACACCGCCACTCAA GGAGTACCTCAATCAACTCAAAGCGCAGACCCTTTCCGATCATCAAACCC TGCCTCATAACGTTTAAAATACGAGATGGCAAGTGAAGGCAAAATTTTGG GATGGACAAATCAAGACATAGACAATGTGCATACTTAAAAAAAAAAACCC ACAAAATTATACACGAGGTCTGATTACTTCACTTCTCGTCTATGGCTGCT TGTGATGAGCTTTTTTGATGAGTGCATACTCCCCCTTCTAAAAAAACTCC TTCCCCCAAACTGAGATATCTAGTCGTAATACTTCGAGAGGGAGTAAGTG CTGCTCGGATAACGGTGCATTTGAATACGGCACGGATTCTTATAATGAAG TGAACGTCTTGATTCTTGAGGGCCTTCTCAAAGAGTCCGCCAAGTTGGGG CCACTGTAAATATAAAGAAAATCTCGCGTGATCATTTTCGCAGAGCTATC AGGCACATTTCCATGAAATTTCAAATCCGCATGACATTTTTGCACACGCC AGTCATAGACGACGAACACATGCTTCTTTTCACACCTGATTACCATTGAG CTAAAGAGCGACTCACATTTCCGCCTCAGTTTCTCGGATGACAGCTCTCT CACACTATACAAGAAGCAATACGGTGCGCCATAACGACGACATATAAGAC AATACGGTGCGCCATACGGAAGCAGGCAGCACTGGCCGATTCTTTAAATT AAGGACAAGATAAGGCTGAACTCATCACCTGGGATCTGAATGCTGAAAAA CCGATAAAAAGTGTCTTTTTGGTCGTATTCCGACTTACGTGGAAGTTAAA TTGAAAATTTAATCCTGGAACCATTGCCATTCTTCCAGAATTCGAGTGTT GCTAGTTTTCCGGTGTCTTATATGGAAAAAATCGTGTTGTCCTTATTTTT GATGATTCTGAAAGAAATTAAGTGCAGAGGTAAAAGAAAGAAGACGATGA GCAACAAGCGGACTTCATCCGTTTCCTGCTTCCTGCACTCACTCTTTCTT CCTTTTATGGTGAATAACTCACCATAAAAAGGTGAAATCCTTGGTTCATA GTAGACTGTAAGCGACTGTCTGACGAAATGGTAATAAACCACGCCCCGAT GCCTCAAATGCGCTTCGCCATGATAGTGAGTGTAGGGAAGAAGCACGGGC AACCCCATAGCAGTGCCATAAAGACCGCAGCATAGCAACAACAGCAGCAG CAAAAGCGGCTGCGGCACAAAGAGCAAGATATGATGATGATGATGATGAT GATGATGGTGATGATGAGGAGGAGGAGGAGGAGAAGGAG
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Coding sequence (CDS) from alignment at scaffold_20:340570..344258-

>mRNA_7598 ID=mRNA_7598|Name=jgi.p|Nanoce1779_2|599301|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at scaffold_20:340570..344258- (Nannochloropsis oceanica)
ATGCTCCACCAGCGGAAAGCGGCGATGGCAGCCGCCGCTGCCGGCGCGTG
CCGCAGCATTCGCAGCGTCGCATCGACCTTGCCCTCCTCTTCGCTCTCGA
CACGCATCTATTTTATGGACCACCCGCCGCTCCACACCGCGCGCCCCGCG
TCTATGGCATCCTCTTCTTCGTCGTCTAATGCTTGGCTGCCAGCCGCGCT
GGTGGCCGTGGCAACTGCTTCCGTCCTGACGTCGCTGACAGAGGCAGCGC
CACCAACAGCGGCGGCGTCGGCACCGGACAGCAGCGACGACACCAAAGAT
AATTCAAAGGAAAATGTGTTGCCTATGCGAGAGGTCATGGCATTGATCGA
AAGCCGGCTGAAGCCCTTTCGCACGGAGCGCTTCCTTTCTTCTCGACCTC
GCAGAAGTAGCAGAAGCGGCAGCGGTACATTTCCTCCTACCGTCGGGGAG
CACGACCTCCCCACCGTTGCCAGCAAAACTTTCCCCAAAATCGCCGTGTT
GAGCAAGGGCAAGGGCGTGGATGAGCCCTACACCATCGAAGTTCCCTTGC
CGCCAACGGCCAGTAGGGAAACAAATGTGCTCGCAGCCTGCCTACATGCC
TTGCAGAAGAAGGGGCACACGCTCACGTTCCACACGGGCTTGACCACAAA
CAATGGAACCAGCCTTTCCTTCGTCTTCGGCGACCAGTCCGGATCCGTCC
TTCTGACCTCTTCGTCGGCTGTCGCGGCGCCATCATCGTCGACTGAGGTG
ATGCCATCGACAGGGACAGGCAAATCAAGCCTCCTTCTGTACAAGACCAA
GGGCTTTACAGAAGCGGACGTAGACGCGGTTGTTGATTCGTACATCATGG
CTTGGAGGAGCAGCCCAGACGATCAGCTCACCGGCTCATTCCTCAGCAAT
TTTACGGATGTCCTAGATGCGCTCCGTATTGGTGGCGGCGGTGGTGGCAA
ATACGCATTTGATCACGAGCAGGACGTCCCTTACTCGTCCCCTCAGCGCC
CCGTCCCACCACATTCCCCCTTTTCCCGGCCGTCCTCGACCCGCGGGGAA
AGCATAGTTGAGCGAGGCGGCGGTATCGGGAGCGGGCAGAATGGCACTGC
TGTGATGGGAGAAAACGACCCGGTGTCCAGGCTAAAGAAGCTTGGCGCGG
AGGTGTTCGAAAAGGCGACGGAAGAGGAACTGGACTGGACTTGCCTAGCG
GGATACGAGAGCATCAAGGCTGAGGTAGAGGATACAGTAGTCATGGCCTT
GCAGCACGCCGAGGCCTACGATGCTATTGCCCGTCAGACCCGCGAGCGTT
ATGAGAGTAATCGCCCAAGGGCCGTTCTTTTTGAGGGCCCTCCAGGGACG
GGCAAGACATTGACCGCTCGCATCATTGCTAGCCGTACGGAGGTGCCGTT
GGTCTTCATTTCAACAGAGCGCGTCCTCAGTAAATGGTATGGCGATTCGG
AGAAGAATTTGGCGAAGGTTTTCGAGGCATGCAAAGAACTGGGAGGGGCT
ATCATCTTTATTGACGAAGTAGACGCGTTGGCTGCCAGCCGAGACACTAA
CATGCACGAGGCTACGAGGCGTCTCCTTAGCGTCATACTGCAGAGTATCG
AGGGCTTTAGAGGCCGCAACAAAAACGTGCTCATATGCGCCACCAACCGC
AAGCAAGACCTCGATTCGGCCTTACTTTCTCGATTTGACGTATCCATCAA
GTTTGACCTGCCCACATGCCCTGCCCGTCAGGCGATCTTTGCCCGGTACG
CAAAACATTTGGCCGGGAATGAGCTAGCCCGTCTGGCGGAGGCTTCCGAA
GCCTACTCCTGCAGGGATATTAAGGAGGTGTGTGAAAATACGGAGCGGAA
GTGGGCTTCCAAAACCATTCGTGGACAAGCGGACGGCCTCACACCGCCAC
TCAAGGAGTACCTCAATCAACTCAAAGCGCAGACCCTTTCCGATCATCAA
ACCCTGCCTCATAACGTTTAA
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Synonyms
Publications