jgi.p|Nanoce1779_2|160707, mRNA_7597 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|160707
Unique NamemRNA_7597
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length691
Alignment locationscaffold_20:337745..339003 -

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Properties
Property NameValue
TranscriptId160793
TrackFilteredModels2
ProteinId160707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:337745..339003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|160707gene_7597Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|160707mRNA_7597-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7597CDS_7597Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7597 ID=mRNA_7597|Name=jgi.p|Nanoce1779_2|160707|organism=Nannochloropsis oceanica|type=mRNA|length=691bp
CCTTATACCCCTCTATTTTGGATGGAAACGATGCAACAATAACGGCGAAC
TCCACTACAGCAGCACCCCCGCCTTTGCCATGGAGGCCGTGGACGGGCTC
TTGGCCAAACTGGCCGCCGACGGAGACTTCCAAGATGACTTGCACCAGCC
GCAGGTCCGATTGGCGATGAAGCACTGGACGGGCGAGAACCGTCTTCCCC
CGGAACAGGCGGAGAAGCTGATGGGAGACTTCCGGGTCCTCGCGGTCTTG
GACAAGATCAAGGCTCTCCAGACCGCCTGTCAACGGGCAGGCCTCCCAGT
ACCCTTGGACAAGGTCTTGCGGAGGGAGACGTCTTTAGGCATGCCCCTCT
CGGCGCCCCCAGCTTCTTCTCCCTCCTCTTCCACTTCTACCTCGACCCCC
TCTTCCTCAATTAAAGCAACAACTCCCCGTCAAGCGAATGAGGACAAGAA
GGTCACGGCTACACGTCGACGAAAAGCCACTGCCCCTGCGACCGCACCCC
CGCCGATTGCCCCGACGGCCCCGGTGCAACGCGTCCAAGTGCCCGAGACG
CTGCCAGGATGGGTGCGCCTTTTGAGCCCTCTCCTGATTATTGGGCTGGT
CCTGGTGTACGCGTTTGCTTCTTGTTTGTGACATACCGTTTCAGTGCAAG
ACGATCGACAAGAAGGACATCAAAATAATTGCAACTCCGAG
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protein sequence of jgi.p|Nanoce1779_2|160707

>mRNA_7597-protein ID=mRNA_7597-protein|Name=jgi.p|Nanoce1779_2|160707|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MEAVDGLLAKLAADGDFQDDLHQPQVRLAMKHWTGENRLPPEQAEKLMGD
FRVLAVLDKIKALQTACQRAGLPVPLDKVLRRETSLGMPLSAPPASSPSS
STSTSTPSSSIKATTPRQANEDKKVTATRRRKATAPATAPPPIAPTAPVQ
RVQVPETLPGWVRLLSPLLIIGLVLVYAFASCL*
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mRNA from alignment at scaffold_20:337745..339003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7597 ID=mRNA_7597|Name=jgi.p|Nanoce1779_2|160707|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp|location=Sequence derived from alignment at scaffold_20:337745..339003- (Nannochloropsis oceanica)
CCTTATACCCCTCTATTTTGGATGGAAACGATGCAACAATAACGGTAGCA
GCAGCAGCGATGTCATTGCCGCTAAAAGCGGTAGCCATGGTGGACAAGGA
ATGCAATATTAGCCTCTGACTTGTATATTGCACACGTAACCCACGACAGG
CGAACTCCACTACAGCAGCACCCCCGCCTTTGCCATGGAGGCCGTGGACG
GGCTCTTGGCCAAACTGGCCGCCGACGGAGACTTCCAAGATGACTTGCAC
CAGCCGCAGGTCCGATTGGTACGTTTCGGTCTATCGTTGTGCGTGTTGGT
CCTCTCATTTTTTGCTGTGCTAGTTCTTGTCTGTGTGGTTGCGCGGATTT
ACGTATGTTTGTTTGGCATGGCCCTTTCAGCCTGGCGCCCCATCTTTCCA
CAAGCCTTTCCCTTTCCCGTACGGTGGTATCGCTACTGATTCGATTACTC
TGTGGTGCGTATGTGGGGTCACATTGCGCGTCAACCAATGATCTTGCGTT
GGAAAATAGTCCAATCCCATAAATCTCATGAGTGATTCCGCTTCTGTGGC
ATCCAATCAGCAGTCCTGATCTTGTACCTTCATAACCATGTCGACAGAGG
AATCGTCGCTCTGAGCTCTGTGGGCCAGACAATTTCGACCTTTGGCGCCC
CCCTAATTCTCATGATCACCTTTGTCCTCATCAGCGCCACCCCCCCTCCC
ACTACGATCTGCCTCTTGACCCCCCCAACAGGCGATGAAGCACTGGACGG
GCGAGAACCGTCTTCCCCCGGAACAGGCGGAGAAGCTGATGGGAGACTTC
CGGGTCCTCGCGGTCTTGGACAAGATCAAGGCTCTCCAGACCGCCTGTCA
ACGGGCAGGCCTCCCAGTACCCTTGGACAAGGTCTTGCGGAGGGAGACGT
CTTTAGGCATGCCCCTCTCGGCGCCCCCAGCTTCTTCTCCCTCCTCTTCC
ACTTCTACCTCGACCCCCTCTTCCTCAATTAAAGCAACAACTCCCCGTCA
AGCGAATGAGGACAAGAAGGTCACGGCTACACGTCGACGAAAAGCCACTG
CCCCTGCGACCGCACCCCCGCCGATTGCCCCGACGGCCCCGGTGCAACGC
GTCCAAGTGCCCGAGACGCTGCCAGGATGGGTGCGCCTTTTGAGCCCTCT
CCTGATTATTGGGCTGGTCCTGGTGTACGCGTTTGCTTCTTGTTTGTGAC
ATACCGTTTCAGTGCAAGACGATCGACAAGAAGGACATCAAAATAATTGC
AACTCCGAG
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Coding sequence (CDS) from alignment at scaffold_20:337745..339003-

>mRNA_7597 ID=mRNA_7597|Name=jgi.p|Nanoce1779_2|160707|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_20:337745..339003- (Nannochloropsis oceanica)
GCGATGAAGCACTGGACGGGCGAGAACCGTCTTCCCCCGGAACAGGCGGA
GAAGCTGATGGGAGACTTCCGGGTCCTCGCGGTCTTGGACAAGATCAAGG
CTCTCCAGACCGCCTGTCAACGGGCAGGCCTCCCAGTACCCTTGGACAAG
GTCTTGCGGAGGGAGACGTCTTTAGGCATGCCCCTCTCGGCGCCCCCAGC
TTCTTCTCCCTCCTCTTCCACTTCTACCTCGACCCCCTCTTCCTCAATTA
AAGCAACAACTCCCCGTCAAGCGAATGAGGACAAGAAGGTCACGGCTACA
CGTCGACGAAAAGCCACTGCCCCTGCGACCGCACCCCCGCCGATTGCCCC
GACGGCCCCGGTGCAACGCGTCCAAGTGCCCGAGACGCTGCCAGGATGGG
TGCGCCTTTTGAGCCCTCTCCTGATTATTGGGCTGGTCCTGGTGTACGCG
TTTGCTTCTTGTTTGTGAATGGAGGCCGTGGACGGGCTCTTGGCCAAACT
GGCCGCCGACGGAGACTTCCAAGATGACTTGCACCAGCCGCAGGTCCGAT
TGGCGATGAAGCACTGGACGGGCGAGAACCGTCTTCCCCCGGAACAGGCG
GAGAAGCTGATGGGAGACTTCCGGGTCCTCGCGGTCTTGGACAAGATCAA
GGCTCTCCAGACCGCCTGTCAACGGGCAGGCCTCCCAGTACCCTTGGACA
AGGTCTTGCGGAGGGAGACGTCTTTAGGCATGCCCCTCTCGGCGCCCCCA
GCTTCTTCTCCCTCCTCTTCCACTTCTACCTCGACCCCCTCTTCCTCAAT
TAAAGCAACAACTCCCCGTCAAGCGAATGAGGACAAGAAGGTCACGGCTA
CACGTCGACGAAAAGCCACTGCCCCTGCGACCGCACCCCCGCCGATTGCC
CCGACGGCCCCGGTGCAACGCGTCCAAGTGCCCGAGACGCTGCCAGGATG
GGTGCGCCTTTTGAGCCCTCTCCTGATTATTGGGCTGGTCCTGGTGTACG
CGTTTGCTTCTTGTTTGTGAATGGAGGCCGTGGACGGGCTCTTGGCCAAA
CTGGCCGCCGACGGAGACTTCCAAGATGACTTGCACCAGCCGCAGGTCCG
ATTG
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Synonyms
Publications