jgi.p|Nanoce1779_2|599297, mRNA_7596 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599297
Unique Name	mRNA_7596
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3033
Alignment location	scaffold_20:336022..339173 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599383
Track	FilteredModels2
ProteinId	599297

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:336022..339173 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599297	gene_7596	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599297	mRNA_7596-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7596	CDS_7596	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:336022..339173+
coding sequence from alignment at scaffold_20:336022..339173+

mRNA sequence

>mRNA_7596 ID=mRNA_7596|Name=jgi.p|Nanoce1779_2|599297|organism=Nannochloropsis oceanica|type=mRNA|length=3033bp
GTCGGCCCCAGTGGCACGGGCAAGACGACACTTCTCCGAGCGGCGGCTCA
ATATTTTGCTGATTGCAAAGGCTACAACGTGATGCGACTGGGCGGGCCAG
AGTTTGGGGGGCGCTTGGTGGGAGAGACAGAGACCAAGCTGCGTCAGGCA
TTTCAAGAGGCGAAAGCAATGGCACCCACCGTGATAGTGCTCGACGAGGT
GGAGGCCTTGTGCTTACGGCGAGACGCTACTTCCTCAGACCTAGACAAAC
GCATGGTGGCCACCTTCTTGGCCTTGTTGGACGGCTTTCAGGGGATGGAG
CGAGTTGTAGTTCTCGCTGCCACGAGCAGACCGCATGCACTTGACTCCGC
AGTGCGGCGTCCAGGTCGGCTGGACCGAGAGATCGACCTAGGCGTGCCCG
GGGAGGCGGCACGGAAAGACATCCTCAAGGTGCTGCTCCGACAGGCAGGC
CCCACAATCATGAAAGTCTCGGAGGAAGACATGCAGCGGGTGGCTAGTCG
CGCACATGGGTTTGTGGGCGCAGACCTGTTGCTTGTATGCAAGGAAGCAG
CCATGCTTGCAGCGAGACGAGTAGTAAAACAGTCAACTCGCGTAGAAGAG
GGTGGGGTCCAAGAGGGCAATGTGCAGGTGACAGGCGAGGACTTGCTGGC
GGGCCTAGCCCGAGTCCGACCAAGCGCACTTCGGGAAGTAGCGGTGGAGG
TGCCGCGGGTGCGCTGGGGGGATATTGGGGGCATGAGTGAGGTGAAGCGT
GCGTTGCAGGAGTGCGTGGAATGGCCGCTCACTCGACCTGAAGCATTCGT
GCGCATGGGCATCCCCCCACCCAAGGGAGTGCTTCTCTACGGACCGCCAG
GTTGTAGCAAAACGCTAATGGCCCGCGCCCTTGCCACCGAGTCCGGTATG
AATTTCTTGGCCGTCAAGGGACCAGAGCTCCTCAGCAAATGGCTGGGCGA
GAGCGAGAAGGCCCTGAAGGCACTCTTTAAAAAAGCGCGGGCGGCTGCGC
CCACAGTTATATTTTTCGATGAGGTGGATGCGCTGGCGGGGCGGCGGGGT
GAGGGCGAAGACTCCAAGGCCTCAGAAAGGGTGTTGAGCCAGTTGCTGAC
AGAGCTGGATGGCGTGCAGCCTTTACGGCGCGTGGTGGTGGTGGCAGCTA
CCAATCGCCCCGACTTGCTGGATCCAGCCCTGCTTCGGCCCGGCCGCATT
GACCGCAAGGTCTACGTGCCACCGCCCGACACGGCTTCCCGCTTCGAAAT
TCTTCGCATTGCGTTGCGCGGTATGCCTGGGGAGTACACGGGTGGAGAAA
GGGATGGAGAGGCGATTTGCGGTGAAATGTTGAACTTGAATGAAATCGCG
CGGCGCACGGAGGGGTTCTCGGGGGCAGAGATGGTGGCTTTGTGTCGAGA
AGCTGCTCTCTGTGCGATAGAGGAAGACCCGGTGAATGCCCACTCGCTGC
AAGGTCGGCACCTTGACCAGGTCTTGACGGGCTGGCAGCGACAAATTACT
CCTCAAATGCTTGATTTTTATCATCACTACGCGGATGGACGATAAAGAAT
ACAAAACAGAGAAATTAAATGAAGATCTGTAAATCAATGTAAATCGATGA
CACTCTCGGAGTTGCAATTATTTTGATGTCCTTCTTGTCGATCGTCTTGC
ACTGAAACGGTATGTCACAAACAAGAAGCAAACGCGTACACCAGGACCAG
CCCAATAATCAGGAGAGGGCTCAAAAGGCGCACCCATCCTGGCAGCGTCT
CGGGCACTTGGACGCGTTGCACCGGGGCCGTCGGGGCAATCGGCGGGGGT
GCGGTCGCAGGGGCAGTGGCTTTTCGTCGACGTGTAGCCGTGACCTTCTT
GTCCTCATTCGCTTGACGGGGAGTTGTTGCTTTAATTGAGGAAGAGGGGG
TCGAGGTAGAAGTGGAAGAGGAGGGAGAAGAAGCTGGGGGCGCCGAGAGG
GGCATGCCTAAAGACGTCTCCCTCCGCAAGACCTTGTCCAAGGGTACTGG
GAGGCCTGCCCGTTGACAGGCGGTCTGGAGAGCCTTGATCTTGTCCAAGA
CCGCGAGGACCCGGAAGTCTCCCATCAGCTTCTCCGCCTGTTCCGGGGGA
AGACGGTTCTCGCCCGTCCAGTGCTTCATCGCCTGTTGGGGGGGTCAAGA
GGCAGATCGTAGTGGGAGGGGGGGTGGCGCTGATGAGGACAAAGGTGATC
ATGAGAATTAGGGGGGCGCCAAAGGTCGAAATTGTCTGGCCCACAGAGCT
CAGAGCGACGATTCCTCTGTCGACATGGTTATGAAGGTACAAGATCAGGA
CTGCTGATTGGATGCCACAGAAGCGGAATCACTCATGAGATTTATGGGAT
TGGACTATTTTCCAACGCAAGATCATTGGTTGACGCGCAATGTGACCCCA
CATACGCACCACAGAGTAATCGAATCAGTAGCGATACCACCGTACGGGAA
AGGGAAAGGCTTGTGGAAAGATGGGGCGCCAGGCTGAAAGGGCCATGCCA
AACAAACATACGTAAATCCGCGCAACCACACAGACAAGAACTAGCACAGC
AAAAAATGAGAGGACCAACACGCACAACGATAGACCGAAACGTACCAATC
GGACCTGCGGCTGGTGCAAGTCATCTTGGAAGTCTCCGTCGGCGGCCAGT
TTGGCCAAGAGCCCGTCCACGGCCTCCATGGCAAAGGCGGGGGTGCTGCT
GTAGTGGAGTTCGCCTGTCGTGGGTTACGTGTGCAATATACAAGTCAGAG
GCTAATATTGCATTCCTTGTCCACCATGGCTACCGCTTTTAGCGGCAATG
ACATCGCTGCTGCTGCTACCGTTATTGTTGCATCGTTTCCATCCAAAATA
GAGGGGTATAAGGAGGCCCGTGCCGAGATGGGAGCCGTCCACGCAACAAC
CATCCACTACAATGTCCCACGGCGAGATAGCCCTTAATTAATTTAATGGG
GAATCATTTCGGGAGGAGGAGGAAGAGGAGGAGGAGGAGGACGAGGAAGA
GGAGGAAGAGGAGGAAGAGGAGGAAGAGAAGGA

protein sequence of jgi.p|Nanoce1779_2|599297

>mRNA_7596-protein ID=mRNA_7596-protein|Name=jgi.p|Nanoce1779_2|599297|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MRLGGPEFGGRLVGETETKLRQAFQEAKAMAPTVIVLDEVEALCLRRDAT
SSDLDKRMVATFLALLDGFQGMERVVVLAATSRPHALDSAVRRPGRLDRE
IDLGVPGEAARKDILKVLLRQAGPTIMKVSEEDMQRVASRAHGFVGADLL
LVCKEAAMLAARRVVKQSTRVEEGGVQEGNVQVTGEDLLAGLARVRPSAL
REVAVEVPRVRWGDIGGMSEVKRALQECVEWPLTRPEAFVRMGIPPPKGV
LLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESEKALKALFK
KARAAAPTVIFFDEVDALAGRRGEGEDSKASERVLSQLLTELDGVQPLRR
VVVVAATNRPDLLDPALLRPGRIDRKVYVPPPDTASRFEILRIALRGMPG
EYTGGERDGEAICGEMLNLNEIARRTEGFSGAEMVALCREAALCAIEEDP
VNAHSLQGRHLDQVLTGWQRQITPQMLDFYHHYADGR*

mRNA from alignment at scaffold_20:336022..339173+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7596 ID=mRNA_7596|Name=jgi.p|Nanoce1779_2|599297|organism=Nannochloropsis oceanica|type=mRNA|length=3152bp|location=Sequence derived from alignment at scaffold_20:336022..339173+ (Nannochloropsis oceanica)
GTCGGCCCCAGTGGCACGGGCAAGACGACACTTCTCCGGTATGTGAAAAA
CTGTTGGTTCCACGAAAGATTATTCTTGTGTCAATTCTAATACAGTTCCT
TGTTGGAAGTCTCTCTTATGCTTTTTTTCACCTCCAACCCCCCTCCTCAA
CATACAGAGCGGCGGCTCAATATTTTGCTGATTGCAAAGGCTACAACGTG
ATGCGACTGGGCGGGCCAGAGTTTGGGGGGCGCTTGGTGGGAGAGACAGA
GACCAAGCTGCGTCAGGCATTTCAAGAGGCGAAAGCAATGGCACCCACCG
TGATAGTGCTCGACGAGGTGGAGGCCTTGTGCTTACGGCGAGACGCTACT
TCCTCAGACCTAGACAAACGCATGGTGGCCACCTTCTTGGCCTTGTTGGA
CGGCTTTCAGGGGATGGAGCGAGTTGTAGTTCTCGCTGCCACGAGCAGAC
CGCATGCACTTGACTCCGCAGTGCGGCGTCCAGGTCGGCTGGACCGAGAG
ATCGACCTAGGCGTGCCCGGGGAGGCGGCACGGAAAGACATCCTCAAGGT
GCTGCTCCGACAGGCAGGCCCCACAATCATGAAAGTCTCGGAGGAAGACA
TGCAGCGGGTGGCTAGTCGCGCACATGGGTTTGTGGGCGCAGACCTGTTG
CTTGTATGCAAGGAAGCAGCCATGCTTGCAGCGAGACGAGTAGTAAAACA
GTCAACTCGCGTAGAAGAGGGTGGGGTCCAAGAGGGCAATGTGCAGGTGA
CAGGCGAGGACTTGCTGGCGGGCCTAGCCCGAGTCCGACCAAGCGCACTT
CGGGAAGTAGCGGTGGAGGTGCCGCGGGTGCGCTGGGGGGATATTGGGGG
CATGAGTGAGGTGAAGCGTGCGTTGCAGGAGTGCGTGGAATGGCCGCTCA
CTCGACCTGAAGCATTCGTGCGCATGGGCATCCCCCCACCCAAGGGAGTG
CTTCTCTACGGACCGCCAGGTTGTAGCAAAACGCTAATGGCCCGCGCCCT
TGCCACCGAGTCCGGTATGAATTTCTTGGCCGTCAAGGGACCAGAGCTCC
TCAGCAAATGGCTGGGCGAGAGCGAGAAGGCCCTGAAGGCACTCTTTAAA
AAAGCGCGGGCGGCTGCGCCCACAGTTATATTTTTCGATGAGGTGGATGC
GCTGGCGGGGCGGCGGGGTGAGGGCGAAGACTCCAAGGCCTCAGAAAGGG
TGTTGAGCCAGTTGCTGACAGAGCTGGATGGCGTGCAGCCTTTACGGCGC
GTGGTGGTGGTGGCAGCTACCAATCGCCCCGACTTGCTGGATCCAGCCCT
GCTTCGGCCCGGCCGCATTGACCGCAAGGTCTACGTGCCACCGCCCGACA
CGGCTTCCCGCTTCGAAATTCTTCGCATTGCGTTGCGCGGTATGCCTGGG
GAGTACACGGGTGGAGAAAGGGATGGAGAGGCGATTTGCGGTGAAATGTT
GAACTTGAATGAAATCGCGCGGCGCACGGAGGGGTTCTCGGGGGCAGAGA
TGGTGGCTTTGTGTCGAGAAGCTGCTCTCTGTGCGATAGAGGAAGACCCG
GTGAATGCCCACTCGCTGCAAGGTCGGCACCTTGACCAGGTCTTGACGGG
CTGGCAGCGACAAATTACTCCTCAAATGCTTGATTTTTATCATCACTACG
CGGATGGACGATAAAGAATACAAAACAGAGAAATTAAATGAAGATCTGTA
AATCAATGTAAATCGATGACACTCTCGGAGTTGCAATTATTTTGATGTCC
TTCTTGTCGATCGTCTTGCACTGAAACGGTATGTCACAAACAAGAAGCAA
ACGCGTACACCAGGACCAGCCCAATAATCAGGAGAGGGCTCAAAAGGCGC
ACCCATCCTGGCAGCGTCTCGGGCACTTGGACGCGTTGCACCGGGGCCGT
CGGGGCAATCGGCGGGGGTGCGGTCGCAGGGGCAGTGGCTTTTCGTCGAC
GTGTAGCCGTGACCTTCTTGTCCTCATTCGCTTGACGGGGAGTTGTTGCT
TTAATTGAGGAAGAGGGGGTCGAGGTAGAAGTGGAAGAGGAGGGAGAAGA
AGCTGGGGGCGCCGAGAGGGGCATGCCTAAAGACGTCTCCCTCCGCAAGA
CCTTGTCCAAGGGTACTGGGAGGCCTGCCCGTTGACAGGCGGTCTGGAGA
GCCTTGATCTTGTCCAAGACCGCGAGGACCCGGAAGTCTCCCATCAGCTT
CTCCGCCTGTTCCGGGGGAAGACGGTTCTCGCCCGTCCAGTGCTTCATCG
CCTGTTGGGGGGGTCAAGAGGCAGATCGTAGTGGGAGGGGGGGTGGCGCT
GATGAGGACAAAGGTGATCATGAGAATTAGGGGGGCGCCAAAGGTCGAAA
TTGTCTGGCCCACAGAGCTCAGAGCGACGATTCCTCTGTCGACATGGTTA
TGAAGGTACAAGATCAGGACTGCTGATTGGATGCCACAGAAGCGGAATCA
CTCATGAGATTTATGGGATTGGACTATTTTCCAACGCAAGATCATTGGTT
GACGCGCAATGTGACCCCACATACGCACCACAGAGTAATCGAATCAGTAG
CGATACCACCGTACGGGAAAGGGAAAGGCTTGTGGAAAGATGGGGCGCCA
GGCTGAAAGGGCCATGCCAAACAAACATACGTAAATCCGCGCAACCACAC
AGACAAGAACTAGCACAGCAAAAAATGAGAGGACCAACACGCACAACGAT
AGACCGAAACGTACCAATCGGACCTGCGGCTGGTGCAAGTCATCTTGGAA
GTCTCCGTCGGCGGCCAGTTTGGCCAAGAGCCCGTCCACGGCCTCCATGG
CAAAGGCGGGGGTGCTGCTGTAGTGGAGTTCGCCTGTCGTGGGTTACGTG
TGCAATATACAAGTCAGAGGCTAATATTGCATTCCTTGTCCACCATGGCT
ACCGCTTTTAGCGGCAATGACATCGCTGCTGCTGCTACCGTTATTGTTGC
ATCGTTTCCATCCAAAATAGAGGGGTATAAGGAGGCCCGTGCCGAGATGG
GAGCCGTCCACGCAACAACCATCCACTACAATGTCCCACGGCGAGATAGC
CCTTAATTAATTTAATGGGGAATCATTTCGGGAGGAGGAGGAAGAGGAGG
AGGAGGAGGACGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGAAG
GA

Coding sequence (CDS) from alignment at scaffold_20:336022..339173+

>mRNA_7596 ID=mRNA_7596|Name=jgi.p|Nanoce1779_2|599297|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_20:336022..339173+ (Nannochloropsis oceanica)
ATGCGACTGGGCGGGCCAGAGTTTGGGGGGCGCTTGGTGGGAGAGACAGA
GACCAAGCTGCGTCAGGCATTTCAAGAGGCGAAAGCAATGGCACCCACCG
TGATAGTGCTCGACGAGGTGGAGGCCTTGTGCTTACGGCGAGACGCTACT
TCCTCAGACCTAGACAAACGCATGGTGGCCACCTTCTTGGCCTTGTTGGA
CGGCTTTCAGGGGATGGAGCGAGTTGTAGTTCTCGCTGCCACGAGCAGAC
CGCATGCACTTGACTCCGCAGTGCGGCGTCCAGGTCGGCTGGACCGAGAG
ATCGACCTAGGCGTGCCCGGGGAGGCGGCACGGAAAGACATCCTCAAGGT
GCTGCTCCGACAGGCAGGCCCCACAATCATGAAAGTCTCGGAGGAAGACA
TGCAGCGGGTGGCTAGTCGCGCACATGGGTTTGTGGGCGCAGACCTGTTG
CTTGTATGCAAGGAAGCAGCCATGCTTGCAGCGAGACGAGTAGTAAAACA
GTCAACTCGCGTAGAAGAGGGTGGGGTCCAAGAGGGCAATGTGCAGGTGA
CAGGCGAGGACTTGCTGGCGGGCCTAGCCCGAGTCCGACCAAGCGCACTT
CGGGAAGTAGCGGTGGAGGTGCCGCGGGTGCGCTGGGGGGATATTGGGGG
CATGAGTGAGGTGAAGCGTGCGTTGCAGGAGTGCGTGGAATGGCCGCTCA
CTCGACCTGAAGCATTCGTGCGCATGGGCATCCCCCCACCCAAGGGAGTG
CTTCTCTACGGACCGCCAGGTTGTAGCAAAACGCTAATGGCCCGCGCCCT
TGCCACCGAGTCCGGTATGAATTTCTTGGCCGTCAAGGGACCAGAGCTCC
TCAGCAAATGGCTGGGCGAGAGCGAGAAGGCCCTGAAGGCACTCTTTAAA
AAAGCGCGGGCGGCTGCGCCCACAGTTATATTTTTCGATGAGGTGGATGC
GCTGGCGGGGCGGCGGGGTGAGGGCGAAGACTCCAAGGCCTCAGAAAGGG
TGTTGAGCCAGTTGCTGACAGAGCTGGATGGCGTGCAGCCTTTACGGCGC
GTGGTGGTGGTGGCAGCTACCAATCGCCCCGACTTGCTGGATCCAGCCCT
GCTTCGGCCCGGCCGCATTGACCGCAAGGTCTACGTGCCACCGCCCGACA
CGGCTTCCCGCTTCGAAATTCTTCGCATTGCGTTGCGCGGTATGCCTGGG
GAGTACACGGGTGGAGAAAGGGATGGAGAGGCGATTTGCGGTGAAATGTT
GAACTTGAATGAAATCGCGCGGCGCACGGAGGGGTTCTCGGGGGCAGAGA
TGGTGGCTTTGTGTCGAGAAGCTGCTCTCTGTGCGATAGAGGAAGACCCG
GTGAATGCCCACTCGCTGCAAGGTCGGCACCTTGACCAGGTCTTGACGGG
CTGGCAGCGACAAATTACTCCTCAAATGCTTGATTTTTATCATCACTACG
CGGATGGACGATAA

Synonyms

Publications