jgi.p|Nanoce1779_2|632367, mRNA_7595 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632367
Unique Name	mRNA_7595
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1384
Alignment location	scaffold_20:332746..334420 -

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Properties


Property Name	Value
TranscriptId	632453
Track	FilteredModels2
ProteinId	632367

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:332746..334420 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632367	gene_7595	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632367	mRNA_7595-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7595	CDS_7595	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:332746..334420-
coding sequence from alignment at scaffold_20:332746..334420-

mRNA sequence

>mRNA_7595 ID=mRNA_7595|Name=jgi.p|Nanoce1779_2|632367|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp
CCACACCAAGGCGACTTTCTCCGTACCTGACATGAAGCTGGTGAGCCGGG
ACGTGAGCGGGAAGGATGGAGAAGGAACGGTGGTATTGCGGCCCGAGGAA
CCCGAGGACATGTGGGCGATCTACAATTTAATAAGTGAGGGAGACCTGGT
GCGGACCACGACTTTCCGCAAGGTGGTCAAGGAAAGTGCCACGGGCTCAA
CGACCAGCAGCAAAATCCGCCTGAACCTAACCATCCAGGTGGAACGCGTG
CAGTTCGACCCAGACACGTGTGTCCTGCGCTTGAGTGGCCGGAATCGGGA
GGAATCGGAGCACGTCAAGATGGGGGCATACCATACCTTGGATCTGGAGT
TGCAGCGGAATTTTACCATCCAAAAGACCTGCTGGGACACGGTGGTGCTC
GACCGTTTGGACGAGGCTTGCGACCCTGTCAAGCAGGCCGAAGTCGCTGC
CATTGTTATGCAGCCCGGTCTGGCCAATATCTGCCTTCTTACGGGCTCTA
TGACCATCGTGCGGCAACGGATCGATATGTCCATCCCGAAGAAGCGGGCC
GGAAATGTTGCCCACGACAAGGCTTTGCAGAAATTCTACCGCGCCACGTA
CGAGGCCCTCATAAGACACATTAATTTCGGGTTGGTAAAGGCTGTGCTGT
TGGCAAGTCCTGGCTTCGTGAATTCAGACTTCTTTGCCTTCATGAACGCC
GAGGCCCAGCTGAAGGAGGACAAGCCGCTGCTGCAGAACAAAGCCAAATT
TGTGCTCTGCCACTCCTCTTCGGGCCACAAGCATGCGCTTGAAGAGGTAC
TGACACAACCCGGCATCCAGGCACGCTTGTCGGACACCAAGGCGGTGGGC
GAGGTGCAGGCTTTGGGGGACTTTTACGCCATGCTCTCGGCCCAGCCAGA
CCGCGCGCACTACGGCTTCAACCACGTGAGTGTAGCAGCCGAACATGACG
CAGTGGAAATGTTGCTCATGAGCGACTCCATCTTCCGGGGCCGCGACTTC
CTGGCGCGCCGCCGCTTTGTGGACCTGGTGGAAAGCGTCAAGGCCAAAGG
CGGCCGCTTTCTGTGCTTCTCCAGCTTGCACGTAACCGGCGAGAAGTTGC
ATCAGCTGGGCGGCGTGGCGGCGGTGCTGCGTTTTCCCTTAGAGATCGAA
ATGGAGGAAGAGGACTTACCGCTGGAGGAGGGAGGTAAGGGAAGCAGCAG
TAACGGCGTTTGTGGCGGCGGCGGGAGAGGCTCAAACAAGGACGGAGATG
TCGGGGACTTCTACAGTGGGGAGCCCATAGAACAGCATGAGGATGAAGAC
AGAGAAGAGCGCCACAGGGCTGTCGAAGAGGAGGGTATGGAGGCAATAAG
AGAAGCCACTGACTTGGAAGGAATGGGCTTGTAA

protein sequence of jgi.p|Nanoce1779_2|632367

>mRNA_7595-protein ID=mRNA_7595-protein|Name=jgi.p|Nanoce1779_2|632367|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVK
ESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAY
HTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANI
CLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFG
LVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHK
HALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVS
VAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLH
VTGEKLHQLGGVAAVLRFPLEIEMEEEDLPLEEGGKGSSSNGVCGGGGRG
SNKDGDVGDFYSGEPIEQHEDEDREERHRAVEEEGMEAIREATDLEGMGL
*

mRNA from alignment at scaffold_20:332746..334420-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7595 ID=mRNA_7595|Name=jgi.p|Nanoce1779_2|632367|organism=Nannochloropsis oceanica|type=mRNA|length=1675bp|location=Sequence derived from alignment at scaffold_20:332746..334420- (Nannochloropsis oceanica)
CCACACCAAGGCGACTTTCTCCGTACCTGACATGAAGCTGGTGAGCCGGG
ACGTGAGCGGGAAGGATGGAGAAGGAACGGTGGTATTGCGGCCCGAGGAA
CCCGAGGACATGTGGGCGATCTACAATTTAATAAGTGAGGGAGACCTGGT
GCGGACCACGACTTTCCGCAAGGTGGTCAAGGAAAGTGCCACGGGCTCAA
CGACCAGCAGCAAAATCCGCCTGAACCTAACCATCCAGGTGGAACGCGTG
CAGTTCGACCCAGACACGTGTGTCCTGCGCTTGAGTGGCCGGAATCGGGA
GGAATCGGAGCACGTCAAGGTAAGAAAGGAGAATGACAGAGGTGCACGCT
CACATTTTAAACTTTGTCCTGCCCGTCCAATATCTCAGATGGGGGCATAC
CATACCTTGGATCTGGAGTTGCAGCGGAATTTTACCATCCAAAAGACCTG
CTGGGACACGGTGGTGCTCGACCGTTTGGACGAGGCTTGCGACCCTGTCA
AGCAGGCCGAAGTCGCTGCCATTGTTATGCAGCCCGGTCTGGCCAATATC
TGCCTTCTTACGGGCTCTATGACCATCGTGCGGCAACGGATCGATGTACG
TCTCCGGTACTTGCTCTTTGACTCTGGGTTACGGTCTAGTCTGCTTGTTG
CTGTTCAAGCCATTGGTGGTTGGTGGAACAGTTGCCGGGTATCATTCTCG
TCTTTTCTTTCGTTATCATGATTTTCCTGACTCTTCATTTATCTGGGTCC
CCATCTTCTCCTTCAAGCTACTGTCCCCCCCACCTGAATCTTCTCTCATC
CCCAACCCTTCCCTCAGATGTCCATCCCGAAGAAGCGGGCCGGAAATGTT
GCCCACGACAAGGCTTTGCAGAAATTCTACCGCGCCACGTACGAGGCCCT
CATAAGACACATTAATTTCGGGTTGGTAAAGGCTGTGCTGTTGGCAAGTC
CTGGCTTCGTGAATTCAGACTTCTTTGCCTTCATGAACGCCGAGGCCCAG
CTGAAGGAGGACAAGCCGCTGCTGCAGAACAAAGCCAAATTTGTGCTCTG
CCACTCCTCTTCGGGCCACAAGCATGCGCTTGAAGAGGTACTGACACAAC
CCGGCATCCAGGCACGCTTGTCGGACACCAAGGCGGTGGGCGAGGTGCAG
GCTTTGGGGGACTTTTACGCCATGCTCTCGGCCCAGCCAGACCGCGCGCA
CTACGGCTTCAACCACGTGAGTGTAGCAGCCGAACATGACGCAGTGGAAA
TGTTGCTCATGAGCGACTCCATCTTCCGGGGCCGCGACTTCCTGGCGCGC
CGCCGCTTTGTGGACCTGGTGGAAAGCGTCAAGGCCAAAGGCGGCCGCTT
TCTGTGCTTCTCCAGCTTGCACGTAACCGGCGAGAAGTTGCATCAGCTGG
GCGGCGTGGCGGCGGTGCTGCGTTTTCCCTTAGAGATCGAAATGGAGGAA
GAGGACTTACCGCTGGAGGAGGGAGGTAAGGGAAGCAGCAGTAACGGCGT
TTGTGGCGGCGGCGGGAGAGGCTCAAACAAGGACGGAGATGTCGGGGACT
TCTACAGTGGGGAGCCCATAGAACAGCATGAGGATGAAGACAGAGAAGAG
CGCCACAGGGCTGTCGAAGAGGAGGGTATGGAGGCAATAAGAGAAGCCAC
TGACTTGGAAGGAATGGGCTTGTAA

Coding sequence (CDS) from alignment at scaffold_20:332746..334420-

>mRNA_7595 ID=mRNA_7595|Name=jgi.p|Nanoce1779_2|632367|organism=Nannochloropsis oceanica|type=CDS|length=4059bp|location=Sequence derived from alignment at scaffold_20:332746..334420- (Nannochloropsis oceanica)
ATGTCCATCCCGAAGAAGCGGGCCGGAAATGTTGCCCACGACAAGGCTTT
GCAGAAATTCTACCGCGCCACGTACGAGGCCCTCATAAGACACATTAATT
TCGGGTTGGTAAAGGCTGTGCTGTTGGCAAGTCCTGGCTTCGTGAATTCA
GACTTCTTTGCCTTCATGAACGCCGAGGCCCAGCTGAAGGAGGACAAGCC
GCTGCTGCAGAACAAAGCCAAATTTGTGCTCTGCCACTCCTCTTCGGGCC
ACAAGCATGCGCTTGAAGAGGTACTGACACAACCCGGCATCCAGGCACGC
TTGTCGGACACCAAGGCGGTGGGCGAGGTGCAGGCTTTGGGGGACTTTTA
CGCCATGCTCTCGGCCCAGCCAGACCGCGCGCACTACGGCTTCAACCACG
TGAGTGTAGCAGCCGAACATGACGCAGTGGAAATGTTGCTCATGAGCGAC
TCCATCTTCCGGGGCCGCGACTTCCTGGCGCGCCGCCGCTTTGTGGACCT
GGTGGAAAGCGTCAAGGCCAAAGGCGGCCGCTTTCTGTGCTTCTCCAGCT
TGCACGTAACCGGCGAGAAGTTGCATCAGCTGGGCGGCGTGGCGGCGGTG
CTGCGTTTTCCCTTAGAGATCGAAATGGAGGAAGAGGACTTACCGCTGGA
GGAGGGAGGTAAGGGAAGCAGCAGTAACGGCGTTTGTGGCGGCGGCGGGA
GAGGCTCAAACAAGGACGGAGATGTCGGGGACTTCTACAGTGGGGAGCCC
ATAGAACAGCATGAGGATGAAGACAGAGAAGAGCGCCACAGGGCTGTCGA
AGAGGAGGGTATGGAGGCAATAAGAGAAGCCACTGACTTGGAAGGAATGG
GCTTGTAAATGGGGGCATACCATACCTTGGATCTGGAGTTGCAGCGGAAT
TTTACCATCCAAAAGACCTGCTGGGACACGGTGGTGCTCGACCGTTTGGA
CGAGGCTTGCGACCCTGTCAAGCAGGCCGAAGTCGCTGCCATTGTTATGC
AGCCCGGTCTGGCCAATATCTGCCTTCTTACGGGCTCTATGACCATCGTG
CGGCAACGGATCGATATGAAGCTGGTGAGCCGGGACGTGAGCGGGAAGGA
TGGAGAAGGAACGGTGGTATTGCGGCCCGAGGAACCCGAGGACATGTGGG
CGATCTACAATTTAATAAGTGAGGGAGACCTGGTGCGGACCACGACTTTC
CGCAAGGTGGTCAAGGAAAGTGCCACGGGCTCAACGACCAGCAGCAAAAT
CCGCCTGAACCTAACCATCCAGGTGGAACGCGTGCAGTTCGACCCAGACA
CGTGTGTCCTGCGCTTGAGTGGCCGGAATCGGGAGGAATCGGAGCACGTC
AAGATGTCCATCCCGAAGAAGCGGGCCGGAAATGTTGCCCACGACAAGGC
TTTGCAGAAATTCTACCGCGCCACGTACGAGGCCCTCATAAGACACATTA
ATTTCGGGTTGGTAAAGGCTGTGCTGTTGGCAAGTCCTGGCTTCGTGAAT
TCAGACTTCTTTGCCTTCATGAACGCCGAGGCCCAGCTGAAGGAGGACAA
GCCGCTGCTGCAGAACAAAGCCAAATTTGTGCTCTGCCACTCCTCTTCGG
GCCACAAGCATGCGCTTGAAGAGGTACTGACACAACCCGGCATCCAGGCA
CGCTTGTCGGACACCAAGGCGGTGGGCGAGGTGCAGGCTTTGGGGGACTT
TTACGCCATGCTCTCGGCCCAGCCAGACCGCGCGCACTACGGCTTCAACC
ACGTGAGTGTAGCAGCCGAACATGACGCAGTGGAAATGTTGCTCATGAGC
GACTCCATCTTCCGGGGCCGCGACTTCCTGGCGCGCCGCCGCTTTGTGGA
CCTGGTGGAAAGCGTCAAGGCCAAAGGCGGCCGCTTTCTGTGCTTCTCCA
GCTTGCACGTAACCGGCGAGAAGTTGCATCAGCTGGGCGGCGTGGCGGCG
GTGCTGCGTTTTCCCTTAGAGATCGAAATGGAGGAAGAGGACTTACCGCT
GGAGGAGGGAGGTAAGGGAAGCAGCAGTAACGGCGTTTGTGGCGGCGGCG
GGAGAGGCTCAAACAAGGACGGAGATGTCGGGGACTTCTACAGTGGGGAG
CCCATAGAACAGCATGAGGATGAAGACAGAGAAGAGCGCCACAGGGCTGT
CGAAGAGGAGGGTATGGAGGCAATAAGAGAAGCCACTGACTTGGAAGGAA
TGGGCTTGTAAATGGGGGCATACCATACCTTGGATCTGGAGTTGCAGCGG
AATTTTACCATCCAAAAGACCTGCTGGGACACGGTGGTGCTCGACCGTTT
GGACGAGGCTTGCGACCCTGTCAAGCAGGCCGAAGTCGCTGCCATTGTTA
TGCAGCCCGGTCTGGCCAATATCTGCCTTCTTACGGGCTCTATGACCATC
GTGCGGCAACGGATCGATATGAAGCTGGTGAGCCGGGACGTGAGCGGGAA
GGATGGAGAAGGAACGGTGGTATTGCGGCCCGAGGAACCCGAGGACATGT
GGGCGATCTACAATTTAATAAGTGAGGGAGACCTGGTGCGGACCACGACT
TTCCGCAAGGTGGTCAAGGAAAGTGCCACGGGCTCAACGACCAGCAGCAA
AATCCGCCTGAACCTAACCATCCAGGTGGAACGCGTGCAGTTCGACCCAG
ACACGTGTGTCCTGCGCTTGAGTGGCCGGAATCGGGAGGAATCGGAGCAC
GTCAAGATGTCCATCCCGAAGAAGCGGGCCGGAAATGTTGCCCACGACAA
GGCTTTGCAGAAATTCTACCGCGCCACGTACGAGGCCCTCATAAGACACA
TTAATTTCGGGTTGGTAAAGGCTGTGCTGTTGGCAAGTCCTGGCTTCGTG
AATTCAGACTTCTTTGCCTTCATGAACGCCGAGGCCCAGCTGAAGGAGGA
CAAGCCGCTGCTGCAGAACAAAGCCAAATTTGTGCTCTGCCACTCCTCTT
CGGGCCACAAGCATGCGCTTGAAGAGGTACTGACACAACCCGGCATCCAG
GCACGCTTGTCGGACACCAAGGCGGTGGGCGAGGTGCAGGCTTTGGGGGA
CTTTTACGCCATGCTCTCGGCCCAGCCAGACCGCGCGCACTACGGCTTCA
ACCACGTGAGTGTAGCAGCCGAACATGACGCAGTGGAAATGTTGCTCATG
AGCGACTCCATCTTCCGGGGCCGCGACTTCCTGGCGCGCCGCCGCTTTGT
GGACCTGGTGGAAAGCGTCAAGGCCAAAGGCGGCCGCTTTCTGTGCTTCT
CCAGCTTGCACGTAACCGGCGAGAAGTTGCATCAGCTGGGCGGCGTGGCG
GCGGTGCTGCGTTTTCCCTTAGAGATCGAAATGGAGGAAGAGGACTTACC
GCTGGAGGAGGGAGGTAAGGGAAGCAGCAGTAACGGCGTTTGTGGCGGCG
GCGGGAGAGGCTCAAACAAGGACGGAGATGTCGGGGACTTCTACAGTGGG
GAGCCCATAGAACAGCATGAGGATGAAGACAGAGAAGAGCGCCACAGGGC
TGTCGAAGAGGAGGGTATGGAGGCAATAAGAGAAGCCACTGACTTGGAAG
GAATGGGCTTGTAAATGGGGGCATACCATACCTTGGATCTGGAGTTGCAG
CGGAATTTTACCATCCAAAAGACCTGCTGGGACACGGTGGTGCTCGACCG
TTTGGACGAGGCTTGCGACCCTGTCAAGCAGGCCGAAGTCGCTGCCATTG
TTATGCAGCCCGGTCTGGCCAATATCTGCCTTCTTACGGGCTCTATGACC
ATCGTGCGGCAACGGATCGATATGAAGCTGGTGAGCCGGGACGTGAGCGG
GAAGGATGGAGAAGGAACGGTGGTATTGCGGCCCGAGGAACCCGAGGACA
TGTGGGCGATCTACAATTTAATAAGTGAGGGAGACCTGGTGCGGACCACG
ACTTTCCGCAAGGTGGTCAAGGAAAGTGCCACGGGCTCAACGACCAGCAG
CAAAATCCGCCTGAACCTAACCATCCAGGTGGAACGCGTGCAGTTCGACC
CAGACACGTGTGTCCTGCGCTTGAGTGGCCGGAATCGGGAGGAATCGGAG
CACGTCAAG

Synonyms

Publications