jgi.p|Nanoce1779_2|599287, mRNA_7594 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599287
Unique NamemRNA_7594
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_20:331785..332747 +

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Properties
Property NameValue
TranscriptId599373
TrackFilteredModels2
ProteinId599287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:331785..332747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599287gene_7594Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599287mRNA_7594-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7594CDS_7594Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7594 ID=mRNA_7594|Name=jgi.p|Nanoce1779_2|599287|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
CAGGGTCCTGCCGATTTGCCGGTGCGCCCTACTTCCGTTTAGAACGCTGC
CTAGCAGACCCAGCACACACATCCCATGATGAAAATCCTTGTGCTGCTGC
TGTCCCTTCTACTCCTGTCCTCGAGTCACGCGTTTGTTGTCCCGATCTAC
CGCAGCCGGAGAACGTCTTGCACCGCCGCTATGTCGAGGAGCAGCCATTG
CGGGACCAAGACCAGCAGCAGCTGCATCAGCTACAGCAGCAGGAGTAGGA
GGCTAGGACCGCTGCGTGCTGCTGAAGGCGAGGACAAGCCGGAGAAGCGG
GAGCTGGACCGTCTGTTTGAAGAGGCAGAAAAGGCGAATCAAAGCAGTGC
GTTCGGGGATGCCGTAAAAACCACCGTGGACCGGCTGCCGCTGCCAAGTT
TGGGGGGTCCTAAAGCAACCAGCCCAGAGCCCGACCGGCCCTTCCGCTTT
CCGGCCTACGGCTTCCTCTTCTTATCCATGATGCTGGGAATCAGCTTCAC
GGGATCGCTCGCGGAGCTCGCGGGTGGCAAACCACTTTTGGGGCTGATGG
GCACAACCGCTGTGGTGGCGATTGCGGGTCCTGGCTTTGTTGCCTCGTTC
GTGGTGGCAGTGAAGCGTTACAAGGAAGAGGAGAAAGAGGATAATGCTCG
GTTGGAAGAAGAGGAGCGTCAGGAGGCGCAAGCTCGGCGACGGGCGCTGC
AGGGGCCTGTGCCGCTAGAGGCCTTGAAGAAGAAGGAGTAAAGAAAGATC
ACGGAGCTAGGTATTGACAGATTTTTTATTACAGAACGGAACATGCGTGT
GTGCCTATGTTGCAACATCTGAAGTGATGAATGGAGCAGTCATATGCACA
AATGTTTTTTTCTCTGTTGTTTGGTTTGATCAAGCCTTCGCGTGATTCTC
GAAATTGAAATAATTGACCAAAAACAAAAGAATAGTATGTATGTGAAAGA
TTTCATTCTTTTT
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protein sequence of jgi.p|Nanoce1779_2|599287

>mRNA_7594-protein ID=mRNA_7594-protein|Name=jgi.p|Nanoce1779_2|599287|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MMKILVLLLSLLLLSSSHAFVVPIYRSRRTSCTAAMSRSSHCGTKTSSSC
ISYSSRSRRLGPLRAAEGEDKPEKRELDRLFEEAEKANQSSAFGDAVKTT
VDRLPLPSLGGPKATSPEPDRPFRFPAYGFLFLSMMLGISFTGSLAELAG
GKPLLGLMGTTAVVAIAGPGFVASFVVAVKRYKEEEKEDNARLEEEERQE
AQARRRALQGPVPLEALKKKE*
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mRNA from alignment at scaffold_20:331785..332747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7594 ID=mRNA_7594|Name=jgi.p|Nanoce1779_2|599287|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at scaffold_20:331785..332747+ (Nannochloropsis oceanica)
CAGGGTCCTGCCGATTTGCCGGTGCGCCCTACTTCCGTTTAGAACGCTGC
CTAGCAGACCCAGCACACACATCCCATGATGAAAATCCTTGTGCTGCTGC
TGTCCCTTCTACTCCTGTCCTCGAGTCACGCGTTTGTTGTCCCGATCTAC
CGCAGCCGGAGAACGTCTTGCACCGCCGCTATGTCGAGGAGCAGCCATTG
CGGGACCAAGACCAGCAGCAGCTGCATCAGCTACAGCAGCAGGAGTAGGA
GGCTAGGACCGCTGCGTGCTGCTGAAGGCGAGGACAAGCCGGAGAAGCGG
GAGCTGGACCGTCTGTTTGAAGAGGCAGAAAAGGCGAATCAAAGCAGTGC
GTTCGGGGATGCCGTAAAAACCACCGTGGACCGGCTGCCGCTGCCAAGTT
TGGGGGGTCCTAAAGCAACCAGCCCAGAGCCCGACCGGCCCTTCCGCTTT
CCGGCCTACGGCTTCCTCTTCTTATCCATGATGCTGGGAATCAGCTTCAC
GGGATCGCTCGCGGAGCTCGCGGGTGGCAAACCACTTTTGGGGCTGATGG
GCACAACCGCTGTGGTGGCGATTGCGGGTCCTGGCTTTGTTGCCTCGTTC
GTGGTGGCAGTGAAGCGTTACAAGGAAGAGGAGAAAGAGGATAATGCTCG
GTTGGAAGAAGAGGAGCGTCAGGAGGCGCAAGCTCGGCGACGGGCGCTGC
AGGGGCCTGTGCCGCTAGAGGCCTTGAAGAAGAAGGAGTAAAGAAAGATC
ACGGAGCTAGGTATTGACAGATTTTTTATTACAGAACGGAACATGCGTGT
GTGCCTATGTTGCAACATCTGAAGTGATGAATGGAGCAGTCATATGCACA
AATGTTTTTTTCTCTGTTGTTTGGTTTGATCAAGCCTTCGCGTGATTCTC
GAAATTGAAATAATTGACCAAAAACAAAAGAATAGTATGTATGTGAAAGA
TTTCATTCTTTTT
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Coding sequence (CDS) from alignment at scaffold_20:331785..332747+

>mRNA_7594 ID=mRNA_7594|Name=jgi.p|Nanoce1779_2|599287|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_20:331785..332747+ (Nannochloropsis oceanica)
ATGATGAAAATCCTTGTGCTGCTGCTGTCCCTTCTACTCCTGTCCTCGAG
TCACGCGTTTGTTGTCCCGATCTACCGCAGCCGGAGAACGTCTTGCACCG
CCGCTATGTCGAGGAGCAGCCATTGCGGGACCAAGACCAGCAGCAGCTGC
ATCAGCTACAGCAGCAGGAGTAGGAGGCTAGGACCGCTGCGTGCTGCTGA
AGGCGAGGACAAGCCGGAGAAGCGGGAGCTGGACCGTCTGTTTGAAGAGG
CAGAAAAGGCGAATCAAAGCAGTGCGTTCGGGGATGCCGTAAAAACCACC
GTGGACCGGCTGCCGCTGCCAAGTTTGGGGGGTCCTAAAGCAACCAGCCC
AGAGCCCGACCGGCCCTTCCGCTTTCCGGCCTACGGCTTCCTCTTCTTAT
CCATGATGCTGGGAATCAGCTTCACGGGATCGCTCGCGGAGCTCGCGGGT
GGCAAACCACTTTTGGGGCTGATGGGCACAACCGCTGTGGTGGCGATTGC
GGGTCCTGGCTTTGTTGCCTCGTTCGTGGTGGCAGTGAAGCGTTACAAGG
AAGAGGAGAAAGAGGATAATGCTCGGTTGGAAGAAGAGGAGCGTCAGGAG
GCGCAAGCTCGGCGACGGGCGCTGCAGGGGCCTGTGCCGCTAGAGGCCTT
GAAGAAGAAGGAGTAA
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Synonyms
Publications