jgi.p|Nanoce1779_2|599283, mRNA_7593 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599283
Unique NamemRNA_7593
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1793
Alignment locationscaffold_20:329751..331660 -

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Properties
Property NameValue
TranscriptId599369
TrackFilteredModels2
ProteinId599283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:329751..331660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599283gene_7593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599283mRNA_7593-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7593CDS_7593Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7593 ID=mRNA_7593|Name=jgi.p|Nanoce1779_2|599283|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp
CAGGAGCAGCCGTTGTTGCGAGTCGGACATAAACAATATTAATAGAGTCG
GTCACTTCTAAACGCCTCTATTCCACTGTGAACACTTAAGCTAGACGCGT
TAGGCAGCAGGTAAATACGACTGGCAAGACCAGCGGAGCCTGTCCCGCGT
GCGGCCTTGGACAACAGCCTGGTTTCGTTGGAGTGCAGATACAAGGATAA
GAACAAGGGGGCAAGTAATAACGGAGCTGTCTTTTCCCTCTTCGTCCCGG
ACCCAGGGCTACGCCTGCCTCCCTTCAGCTCAAGCACAAATCCTCTCTCT
GTGAAAGAAACAATGTTGGACGAGACGCGAAGTCTTGAGACGCACGCTCC
TGCAGCCGCGGACGGCCTGATGGGGCAAGCTTATGGAAGAGGCCGCTACG
GGCACGCACACGAGCAGCACAAGAGCCATCCTAAACTGGAGAGCACTCAC
ACACCTGTGCAGCCTCAAGCTGCCCGAGGGCAAGACAGCGTTAACGACAA
TCCCCCGGATTACGCCGTGGCAAAGGTGCTTCAAAAGATCACAAAATGGA
AAGATTACACGAACTACGGTCAACCCCTTGGCAACTCCCGCGTCATTCCT
ATGAAGACTCCTCTGCCCCTTGACTTGCAGCGTCATCACTTTCCAACGTC
CCCTTCTTCGAGCGCTGTCCTACACAAGGACGCCGAGTCCGAGGCGCATG
TGCACACCATCGGAAAGTTTGTCAAGGAGCAGGCTGACCTCGGGCGGAAT
GTTGGGCTAGTCGTGGACCTCTCCAACCACTCATGTTTGTACGAGGACGA
CCTGAGTCGAGACTGCCCTCTCGTCAAGTATGAACACTTCTTTTTCGTGG
CCAAGGAGATTCCCAGTCACGCTATTTGTCAGCGCGTGAATCAATGCATT
ACGGCATACGTCTTGGCCAATCCGCAGGACTACGTAGCAATCCACTGCAG
CTATGGATGGAACCGCACTGGATTCGTCTGCGCCACCTACTTGGTGGAGG
AGCTACATTATGGCGCGTCCCAGGCCCTGGCTGCATTCACCTCGGCCCGA
TCACCAGGGATTCGACACGAACACTTCATAAGTGAGTTCTTGTCACGCTA
TAGTGATAGTGGCGGCGATGCCGTCGGCATGACAGGGGAGAGGTCGGTGG
TAGGGCAAGAGACTGGCGAGGAAAAGGGAACGGTCCTGCTTGGGGCGCAG
ACGGAGGGAAATGGCCGAGAGACCAATAATGAGACGCTGGGAGCCGTGCT
GGGACTAGAAATGCTGCAGGCCCTTCAAAAAGCGTCTCGAAGGCAGGGAG
GCGGATTCGCGGACGAGCCGCGGCGGATGTCGTCGATGAGGAGCTGCTGC
TTGTCCTAGCGGTCCGCTCGGAGGGGGGTATTCTCAATGGGGACACTGTG
TGCTTGATTGTGGTCTTCTCACCTTCAGGAGACGAGATTTTATTTCTAGG
AGCAGCTGGTTGAGCATAGAGATGAAGAATGGAAGGCAGAGTGTGTCATG
AATGCGAGGTACGGGCAGGCACCAGACTGTCAACTCTTGTACATTACGAT
ATTATGTCAGCTGGGGCAGTAGGGTGTTATACGTACATTTGTGGGCAGTT
GCACAGGCAAAGCGGGGCGTGTGATATTGAGAGCTGTGCGAGGAAAAATC
GCACACACATACACACACGAGAGACTTGCCGTCCTCTGTAAGTTGGATTG
GTATTTGTACATGAAGGTATGTATCACAGAAAATCCTTCAGTCCTACACA
TAAAGTGTAAAGAAATGTGTGAGAAACACCGTACACGTATGTA
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protein sequence of jgi.p|Nanoce1779_2|599283

>mRNA_7593-protein ID=mRNA_7593-protein|Name=jgi.p|Nanoce1779_2|599283|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MLDETRSLETHAPAAADGLMGQAYGRGRYGHAHEQHKSHPKLESTHTPVQ
PQAARGQDSVNDNPPDYAVAKVLQKITKWKDYTNYGQPLGNSRVIPMKTP
LPLDLQRHHFPTSPSSSAVLHKDAESEAHVHTIGKFVKEQADLGRNVGLV
VDLSNHSCLYEDDLSRDCPLVKYEHFFFVAKEIPSHAICQRVNQCITAYV
LANPQDYVAIHCSYGWNRTGFVCATYLVEELHYGASQALAAFTSARSPGI
RHEHFISEFLSRYSDSGGDAVGMTGERSVVGQETGEEKGTVLLGAQTEGN
GRETNNETLGAVLGLEMLQALQKASRRQGGGFADEPRRMSSMRSCCLS*
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mRNA from alignment at scaffold_20:329751..331660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7593 ID=mRNA_7593|Name=jgi.p|Nanoce1779_2|599283|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp|location=Sequence derived from alignment at scaffold_20:329751..331660- (Nannochloropsis oceanica)
CAGGAGCAGCCGTTGTTGCGAGTCGGACATAAACAATATTAATAGAGTCG
GTCACTTCTAAACGCCTCTATTCCACTGTGAACACTTAAGCTAGACGCGT
TAGGCAGCAGGTAAATACGACTGGCAAGACCAGCGGAGCCTGTCCCGCGT
GCGGCCTTGGGTAAGGGGTCCCCCCCTGGGGAGGACGCACGCAGTGGAAG
GAGATGCACCCCCCTCTCAAGGCTCGTACTTGCATGAATGAATTAACGCT
CCCACGTACAATACAATCCATAACAAGACAACAGCCTGGTTTCGTTGGAG
TGCAGATACAAGGATAAGAACAAGGGGGCAAGTAATAACGGAGCTGTCTT
TTCCCTCTTCGTCCCGGACCCAGGGCTACGCCTGCCTCCCTTCAGCTCAA
GCACAAATCCTCTCTCTGTGAAAGAAACAATGTTGGACGAGACGCGAAGT
CTTGAGACGCACGCTCCTGCAGCCGCGGACGGCCTGATGGGGCAAGCTTA
TGGAAGAGGCCGCTACGGGCACGCACACGAGCAGCACAAGAGCCATCCTA
AACTGGAGAGCACTCACACACCTGTGCAGCCTCAAGCTGCCCGAGGGCAA
GACAGCGTTAACGACAATCCCCCGGATTACGCCGTGGCAAAGGTGCTTCA
AAAGATCACAAAATGGAAAGATTACACGAACTACGGTCAACCCCTTGGCA
ACTCCCGCGTCATTCCTATGAAGACTCCTCTGCCCCTTGACTTGCAGCGT
CATCACTTTCCAACGTCCCCTTCTTCGAGCGCTGTCCTACACAAGGACGC
CGAGTCCGAGGCGCATGTGCACACCATCGGAAAGTTTGTCAAGGAGCAGG
CTGACCTCGGGCGGAATGTTGGGCTAGTCGTGGACCTCTCCAACCACTCA
TGTTTGTACGAGGACGACCTGAGTCGAGACTGCCCTCTCGTCAAGTATGA
ACACTTCTTTTTCGTGGCCAAGGAGATTCCCAGTCACGCTATTTGTCAGC
GCGTGAATCAATGCATTACGGCATACGTCTTGGCCAATCCGCAGGACTAC
GTAGCAATCCACTGCAGCTATGGATGGAACCGCACTGGATTCGTCTGCGC
CACCTACTTGGTGGAGGAGCTACATTATGGCGCGTCCCAGGCCCTGGCTG
CATTCACCTCGGCCCGATCACCAGGGATTCGACACGAACACTTCATAAGT
GAGTTCTTGTCACGCTATAGTGATAGTGGCGGCGATGCCGTCGGCATGAC
AGGGGAGAGGTCGGTGGTAGGGCAAGAGACTGGCGAGGAAAAGGGAACGG
TCCTGCTTGGGGCGCAGACGGAGGGAAATGGCCGAGAGACCAATAATGAG
ACGCTGGGAGCCGTGCTGGGACTAGAAATGCTGCAGGCCCTTCAAAAAGC
GTCTCGAAGGCAGGGAGGCGGATTCGCGGACGAGCCGCGGCGGATGTCGT
CGATGAGGAGCTGCTGCTTGTCCTAGCGGTCCGCTCGGAGGGGGGTATTC
TCAATGGGGACACTGTGTGCTTGATTGTGGTCTTCTCACCTTCAGGAGAC
GAGATTTTATTTCTAGGAGCAGCTGGTTGAGCATAGAGATGAAGAATGGA
AGGCAGAGTGTGTCATGAATGCGAGGTACGGGCAGGCACCAGACTGTCAA
CTCTTGTACATTACGATATTATGTCAGCTGGGGCAGTAGGGTGTTATACG
TACATTTGTGGGCAGTTGCACAGGCAAAGCGGGGCGTGTGATATTGAGAG
CTGTGCGAGGAAAAATCGCACACACATACACACACGAGAGACTTGCCGTC
CTCTGTAAGTTGGATTGGTATTTGTACATGAAGGTATGTATCACAGAAAA
TCCTTCAGTCCTACACATAAAGTGTAAAGAAATGTGTGAGAAACACCGTA
CACGTATGTA
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Coding sequence (CDS) from alignment at scaffold_20:329751..331660-

>mRNA_7593 ID=mRNA_7593|Name=jgi.p|Nanoce1779_2|599283|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_20:329751..331660- (Nannochloropsis oceanica)
ATGTTGGACGAGACGCGAAGTCTTGAGACGCACGCTCCTGCAGCCGCGGA
CGGCCTGATGGGGCAAGCTTATGGAAGAGGCCGCTACGGGCACGCACACG
AGCAGCACAAGAGCCATCCTAAACTGGAGAGCACTCACACACCTGTGCAG
CCTCAAGCTGCCCGAGGGCAAGACAGCGTTAACGACAATCCCCCGGATTA
CGCCGTGGCAAAGGTGCTTCAAAAGATCACAAAATGGAAAGATTACACGA
ACTACGGTCAACCCCTTGGCAACTCCCGCGTCATTCCTATGAAGACTCCT
CTGCCCCTTGACTTGCAGCGTCATCACTTTCCAACGTCCCCTTCTTCGAG
CGCTGTCCTACACAAGGACGCCGAGTCCGAGGCGCATGTGCACACCATCG
GAAAGTTTGTCAAGGAGCAGGCTGACCTCGGGCGGAATGTTGGGCTAGTC
GTGGACCTCTCCAACCACTCATGTTTGTACGAGGACGACCTGAGTCGAGA
CTGCCCTCTCGTCAAGTATGAACACTTCTTTTTCGTGGCCAAGGAGATTC
CCAGTCACGCTATTTGTCAGCGCGTGAATCAATGCATTACGGCATACGTC
TTGGCCAATCCGCAGGACTACGTAGCAATCCACTGCAGCTATGGATGGAA
CCGCACTGGATTCGTCTGCGCCACCTACTTGGTGGAGGAGCTACATTATG
GCGCGTCCCAGGCCCTGGCTGCATTCACCTCGGCCCGATCACCAGGGATT
CGACACGAACACTTCATAAGTGAGTTCTTGTCACGCTATAGTGATAGTGG
CGGCGATGCCGTCGGCATGACAGGGGAGAGGTCGGTGGTAGGGCAAGAGA
CTGGCGAGGAAAAGGGAACGGTCCTGCTTGGGGCGCAGACGGAGGGAAAT
GGCCGAGAGACCAATAATGAGACGCTGGGAGCCGTGCTGGGACTAGAAAT
GCTGCAGGCCCTTCAAAAAGCGTCTCGAAGGCAGGGAGGCGGATTCGCGG
ACGAGCCGCGGCGGATGTCGTCGATGAGGAGCTGCTGCTTGTCCTAG
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Synonyms
Publications