jgi.p|Nanoce1779_2|599279, mRNA_7592 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599279
Unique NamemRNA_7592
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1430
Alignment locationscaffold_20:328175..329750 +

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Properties
Property NameValue
TranscriptId599365
TrackFilteredModels2
ProteinId599279
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:328175..329750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599279gene_7592Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599279mRNA_7592-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7592CDS_7592Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7592 ID=mRNA_7592|Name=jgi.p|Nanoce1779_2|599279|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
ACAGATCAGAGATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGG
AAAGGCCATGTAAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATC
GCCCACAGCAAGAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGC
TGGGTATGACTATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGT
GTAGTCGCAGGGGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTG
GGTACTAAGCGTTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGG
TGGCCCTGTGCGCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCA
GCAGACTCGATTTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCG
GAGCAATGGGTCCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGG
CTGCCGAGGAGCGTAGTAAGGCGTATGAGCGGAAGATGGGCAAAGCGGGA
ATCGGTAATACGAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTT
CGCGGCCAAGGACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGC
GGTTCGAAGCTGAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCT
CAGAGCATGTCGCGAGCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACC
GGTGTCTTCCACTGCGTCGGCACGACCGTCTATAGTGCCACCGGTGCCCC
CATCATCGTCCTTGCCACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACG
ACTTCCTCCTCACCCGAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAG
TCAGGAGGAGTACGAGAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAG
ACGTGGCAATGGCGAGGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTC
GCCGTCTCTACCATTATCCGTATCCTGGTCAACGTCTTGGAACACCCTTT
CCAGGAAAAGTACAGGAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCA
AAGTATCCGCCGTTACTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTT
GGGTATGTCTCAGAGGATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGC
GCCCGAGGTGCCATTGCAGACCCGCGTCTTGTACCACCGACTGAAACAAA
TCTTGAATGATACGGAGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCT
TGACCGCTGGCAAAATAAAGTCCACCTTGTGACTTGGGCGGGAGATATTG
TAAATGTGGTATCGAGGTAGTGAGGAAGAACATGCAAAATACGAAAATAG
CGTGTGGGGGCAAAAAGGGGAAGGAACAACAAAATGCTATCTATGGCAGC
GCGACATTTGCCGGTGGCAGCAGGCGGCAG
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protein sequence of jgi.p|Nanoce1779_2|599279

>mRNA_7592-protein ID=mRNA_7592-protein|Name=jgi.p|Nanoce1779_2|599279|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MEYLKSALGMKQGKGHVSGSMAPSIPPAASPTARTFDVTFGPTDTQLGMT
ITFDKMGRPVVESVVAGGAANQNGVREGDWVLSVDGNPVGNYESLEVALC
AMERPVIFSFRCPADSICVPDRMTSPSSNRSNGSDADEQRRRTMLAAAEE
RSKAYERKMGKAGIGNTRGNKKSGEGLEKFAAKDDKWTRAHVEHIKRFEA
EQAAALGYNPYESQSMSRAQAQARIELSAPVSSTASARPSIVPPVPPSSS
LPHGGPSPSSVSTTSSSPEAGSGPFILPLSQEEYESPEAFKANEEADVAM
ARMLDQPLESWRVAVSTIIRILVNVLEHPFQEKYRRVRLQNPTFVAKVSA
VTGSLDLLLAAGFGYVSEDEETFLALPSPAPEVPLQTRVLYHRLKQILND
TEDSRLKMVSAKS*
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mRNA from alignment at scaffold_20:328175..329750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7592 ID=mRNA_7592|Name=jgi.p|Nanoce1779_2|599279|organism=Nannochloropsis oceanica|type=mRNA|length=1576bp|location=Sequence derived from alignment at scaffold_20:328175..329750+ (Nannochloropsis oceanica)
ACAGATCAGAGATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGG
AAAGGCCATGTAAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATC
GCCCACAGCAAGAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGC
TGGGTATGACTATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGT
GTAGTCGCAGGGGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTG
GGTACTAAGCGTTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGG
TGGCCCTGTGCGCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCA
GCAGACTCGATTTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCG
GAGCAATGGGTCCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGG
CTGCCGAGGAGCGTAGTAAGGCGTATGAGCGGAAGATGGGCAAAGCGGGA
ATCGGTAATACGAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTT
CGCGGCCAAGGACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGC
GGTTCGAAGCTGAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCT
CAGAGCATGTCGCGAGGTAAAACGAAGCATCTTGACGACAGTGCTGGGGT
CTTTGAGGGTGAGGGAGGTCCACACGCTTCGACGTCAAAATCATTATTCA
TGTCACCATAATTCCACACGAGGACCCTTACCTTCAACCTCACACCAAAT
TATCACGCACAGCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTG
TCTTCCACTGCGTCGGCACGACCGTCTATAGTGCCACCGGTGCCCCCATC
ATCGTCCTTGCCACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTT
CCTCCTCACCCGAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAG
GAGGAGTACGAGAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGT
GGCAATGGCGAGGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCG
TCTCTACCATTATCCGTATCCTGGTCAACGTCTTGGAACACCCTTTCCAG
GAAAAGTACAGGAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGT
ATCCGCCGTTACTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGT
ATGTCTCAGAGGATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCC
GAGGTGCCATTGCAGACCCGCGTCTTGTACCACCGACTGAAACAAATCTT
GAATGATACGGAGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGAC
CGCTGGCAAAATAAAGTCCACCTTGTGACTTGGGCGGGAGATATTGTAAA
TGTGGTATCGAGGTAGTGAGGAAGAACATGCAAAATACGAAAATAGCGTG
TGGGGGCAAAAAGGGGAAGGAACAACAAAATGCTATCTATGGCAGCGCGA
CATTTGCCGGTGGCAGCAGGCGGCAG
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Coding sequence (CDS) from alignment at scaffold_20:328175..329750+

>mRNA_7592 ID=mRNA_7592|Name=jgi.p|Nanoce1779_2|599279|organism=Nannochloropsis oceanica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_20:328175..329750+ (Nannochloropsis oceanica)
ATGGAGTACCTGAAAAGTGCCTTGGGGATGAAACAAGGGAAAGGCCATGT
AAGCGGCAGCATGGCCCCCTCAATTCCCCCGGCGGCATCGCCCACAGCAA
GAACGTTTGACGTTACCTTTGGCCCCACCGACACTCAGCTGGGTATGACT
ATAACGTTTGACAAGATGGGACGACCTGTGGTGGAGAGTGTAGTCGCAGG
GGGAGCGGCGAATCAGAACGGTGTGAGGGAGGGCGACTGGGTACTAAGCG
TTGACGGGAACCCGGTGGGCAATTACGAGAGCTTGGAGGTGGCCCTGTGC
GCCATGGAGCGTCCTGTTATTTTCTCCTTTCGGTGTCCAGCAGACTCGAT
TTGCGTGCCAGACCGGATGACAAGCCCCAGCAGCAACCGGAGCAATGGGT
CCGATGCAGACGAGCAACGGCGAAGGACCATGCTTGCGGCTGCCGAGGAG
CGTAGTAAGGCGTATGAGCGGAAGATGGGCAAAGCGGGAATCGGTAATAC
GAGGGGGAATAAGAAAAGCGGGGAAGGTCTCGAGAAGTTCGCGGCCAAGG
ACGACAAGTGGACGCGCGCTCACGTTGAACATATCAAGCGGTTCGAAGCT
GAGCAGGCCGCCGCCCTCGGATATAATCCGTACGAATCTCAGAGCATGTC
GCGAGCACAAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTGTCTTCCA
CTGCGTCGGCACGACCGTCTATAGTGCCACCGGTGCCCCCATCATCGTCC
TTGCCACACGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTTCCTCCTC
ACCCGAAGCGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAGGAGGAGT
ACGAGAGCCCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGTGGCAATG
GCGAGGATGCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCGTCTCTAC
CATTATCCGTATCCTGGTCAACGTCTTGGAACACCCTTTCCAGGAAAAGT
ACAGGAGAGTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGTATCCGCC
GTTACTGGATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGTATGTCTC
AGAGGATGAGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCCGAGGTGC
CATTGCAGACCCGCGTCTTGTACCACCGACTGAAACAAATCTTGAATGAT
ACGGAGGACTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGAATGGAGTA
CCTGAAAAGTGCCTTGGGGATGAAACAAGGGAAAGGCCATGTAAGCGGCA
GCATGGCCCCCTCAATTCCCCCGGCGGCATCGCCCACAGCAAGAACGTTT
GACGTTACCTTTGGCCCCACCGACACTCAGCTGGGTATGACTATAACGTT
TGACAAGATGGGACGACCTGTGGTGGAGAGTGTAGTCGCAGGGGGAGCGG
CGAATCAGAACGGTGTGAGGGAGGGCGACTGGGTACTAAGCGTTGACGGG
AACCCGGTGGGCAATTACGAGAGCTTGGAGGTGGCCCTGTGCGCCATGGA
GCGTCCTGTTATTTTCTCCTTTCGGTGTCCAGCAGACTCGATTTGCGTGC
CAGACCGGATGACAAGCCCCAGCAGCAACCGGAGCAATGGGTCCGATGCA
GACGAGCAACGGCGAAGGACCATGCTTGCGGCTGCCGAGGAGCGTAGTAA
GGCGTATGAGCGGAAGATGGGCAAAGCGGGAATCGGTAATACGAGGGGGA
ATAAGAAAAGCGGGGAAGGTCTCGAGAAGTTCGCGGCCAAGGACGACAAG
TGGACGCGCGCTCACGTTGAACATATCAAGCGGTTCGAAGCTGAGCAGGC
CGCCGCCCTCGGATATAATCCGTACGAATCTCAGAGCATGTCGCGAGCAC
AAGCGCAGGCCCGCATTGAGTTGTCGGCACCGGTGTCTTCCACTGCGTCG
GCACGACCGTCTATAGTGCCACCGGTGCCCCCATCATCGTCCTTGCCACA
CGGCGGCCCTTCTCCGTCCTCCGTGTCCACGACTTCCTCCTCACCCGAAG
CGGGCAGTGGGCCCTTCATCCTGCCATTGAGTCAGGAGGAGTACGAGAGC
CCCGAGGCCTTCAAGGCTAACGAAGAGGCAGACGTGGCAATGGCGAGGAT
GCTCGACCAGCCTCTGGAGAGTTGGAGGGTCGCCGTCTCTACCATTATCC
GTATCCTGGTCAACGTCTTGGAACACCCTTTCCAGGAAAAGTACAGGAGA
GTCCGGCTTCAGAATCCCACCTTCGTGGCCAAAGTATCCGCCGTTACTGG
ATCCTTGGACTTGCTTCTCGCGGCGGGCTTTGGGTATGTCTCAGAGGATG
AGGAGACGTTCTTGGCCTTGCCCTCGCCGGCGCCCGAGGTGCCATTGCAG
ACCCGCGTCTTGTACCACCGACTGAAACAAATCTTGAATGATACGGAGGA
CTCGAGGCTGAAGATGGTGTCTGCCAAGTCTTGA
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Synonyms
Publications