jgi.p|Nanoce1779_2|599273, mRNA_7590 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599273
Unique NamemRNA_7590
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1161
Alignment locationscaffold_20:324293..325453 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599359
TrackFilteredModels2
ProteinId599273
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:324293..325453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599273gene_7590Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599273mRNA_7590-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7590CDS_7590Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7590 ID=mRNA_7590|Name=jgi.p|Nanoce1779_2|599273|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
ACAGATATTGCACTAAATAATAATACGACTTATAAAAATGTCCTATCATG
ACCCCAAGCGCGGGGAGCACGGCGTAGTGGAAGCACCTGATGCATCATCG
TCCCCGTACTACTACCAGCGGCATGCCTACCCAGTGGCCTCGCAGGAAAT
GCCCACGGTTTACTGCCCGGCCTATCAACAGCAGCCGCAACCGGCGACTT
ATTCCCACCACCCGCATGCGCAACACCAGCAGCAGCTCCCCACCCAGCCC
TACCCCAAAGCTGGCGGCGACGAGTTTTATGATCCCGAGGCGGCACAAGT
GGCAGAGCATGTTCCCTCCTCGTTCATGGAAAACACTCAAGGCCAAATCC
GCCTGGCCTTACTTCGAAAAGTGTATTCAATTTTGAGCATACAGTTGCTC
ACTACGGTGGGGGTGGCCTGCCTGTTTTGTTTCAACCGCAGCGTCAGCGA
TTTCGTCCTTGCCACGCCCCAGCTCTTCACCCTCGCCCTCGTCCTGTCCT
TTGCCTGCCTAATTGGCCTATTCTGCTTCAAGCAAAAGCATCCGTGGAAC
ATGGTGTTGCTTGTTGCATTTACGCTTTGTCAGTCCTTTCTGGTGGGCCT
CATTTGCGCCATATACTACCGTCAGGGATCCGGTGAGCTGGTCTTGCAGG
CTTTTGGCATCACGCTGGCTATCTTTGTGGGCCTCACCGCCTACACCTAT
TACAGTGACAAGGACTTCTCCTTCTTAGGAGGGTTTTGTATGGCAGGTTT
GATAGGCTTAATTGTTTGGGGACTCATTTCTTGGCTGACGGGCTGGCGCT
CGACGTTTTTTTACTCCTTATTTGGCGCTCTCTTGTTCTCTGCACTTATT
GTGTACGACACATGGTTGCTGTCGAAGCGGTTTGGCCCTGAGCAGGCCAT
TATTGCCAGCATCATGCTTTACCTTGATATCATTAACCTTTTCCTCTTCA
TCTTGCAGCTTTTGGGCGGCAGCCGGCGTGACTAAGTGGTGGAGAACCGG
AAATACTTCCTGCGAGACAAGAAGCATGAACATAGATGATGGGAGTCACA
AAAATGTCGCCCGATAAAGGATCTTAAGTTTGAGAATGGAGGGCAAGGGC
TCTGATATAAAAATGCATCGGAAGATGTGAGAAGTAAGAAAGAGAAGTCG
ACGTCGCTATT
back to top

protein sequence of jgi.p|Nanoce1779_2|599273

>mRNA_7590-protein ID=mRNA_7590-protein|Name=jgi.p|Nanoce1779_2|599273|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MSYHDPKRGEHGVVEAPDASSSPYYYQRHAYPVASQEMPTVYCPAYQQQP
QPATYSHHPHAQHQQQLPTQPYPKAGGDEFYDPEAAQVAEHVPSSFMENT
QGQIRLALLRKVYSILSIQLLTTVGVACLFCFNRSVSDFVLATPQLFTLA
LVLSFACLIGLFCFKQKHPWNMVLLVAFTLCQSFLVGLICAIYYRQGSGE
LVLQAFGITLAIFVGLTAYTYYSDKDFSFLGGFCMAGLIGLIVWGLISWL
TGWRSTFFYSLFGALLFSALIVYDTWLLSKRFGPEQAIIASIMLYLDIIN
LFLFILQLLGGSRRD*
back to top

mRNA from alignment at scaffold_20:324293..325453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7590 ID=mRNA_7590|Name=jgi.p|Nanoce1779_2|599273|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at scaffold_20:324293..325453+ (Nannochloropsis oceanica)
ACAGATATTGCACTAAATAATAATACGACTTATAAAAATGTCCTATCATG
ACCCCAAGCGCGGGGAGCACGGCGTAGTGGAAGCACCTGATGCATCATCG
TCCCCGTACTACTACCAGCGGCATGCCTACCCAGTGGCCTCGCAGGAAAT
GCCCACGGTTTACTGCCCGGCCTATCAACAGCAGCCGCAACCGGCGACTT
ATTCCCACCACCCGCATGCGCAACACCAGCAGCAGCTCCCCACCCAGCCC
TACCCCAAAGCTGGCGGCGACGAGTTTTATGATCCCGAGGCGGCACAAGT
GGCAGAGCATGTTCCCTCCTCGTTCATGGAAAACACTCAAGGCCAAATCC
GCCTGGCCTTACTTCGAAAAGTGTATTCAATTTTGAGCATACAGTTGCTC
ACTACGGTGGGGGTGGCCTGCCTGTTTTGTTTCAACCGCAGCGTCAGCGA
TTTCGTCCTTGCCACGCCCCAGCTCTTCACCCTCGCCCTCGTCCTGTCCT
TTGCCTGCCTAATTGGCCTATTCTGCTTCAAGCAAAAGCATCCGTGGAAC
ATGGTGTTGCTTGTTGCATTTACGCTTTGTCAGTCCTTTCTGGTGGGCCT
CATTTGCGCCATATACTACCGTCAGGGATCCGGTGAGCTGGTCTTGCAGG
CTTTTGGCATCACGCTGGCTATCTTTGTGGGCCTCACCGCCTACACCTAT
TACAGTGACAAGGACTTCTCCTTCTTAGGAGGGTTTTGTATGGCAGGTTT
GATAGGCTTAATTGTTTGGGGACTCATTTCTTGGCTGACGGGCTGGCGCT
CGACGTTTTTTTACTCCTTATTTGGCGCTCTCTTGTTCTCTGCACTTATT
GTGTACGACACATGGTTGCTGTCGAAGCGGTTTGGCCCTGAGCAGGCCAT
TATTGCCAGCATCATGCTTTACCTTGATATCATTAACCTTTTCCTCTTCA
TCTTGCAGCTTTTGGGCGGCAGCCGGCGTGACTAAGTGGTGGAGAACCGG
AAATACTTCCTGCGAGACAAGAAGCATGAACATAGATGATGGGAGTCACA
AAAATGTCGCCCGATAAAGGATCTTAAGTTTGAGAATGGAGGGCAAGGGC
TCTGATATAAAAATGCATCGGAAGATGTGAGAAGTAAGAAAGAGAAGTCG
ACGTCGCTATT
back to top

Coding sequence (CDS) from alignment at scaffold_20:324293..325453+

>mRNA_7590 ID=mRNA_7590|Name=jgi.p|Nanoce1779_2|599273|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_20:324293..325453+ (Nannochloropsis oceanica)
ATGTCCTATCATGACCCCAAGCGCGGGGAGCACGGCGTAGTGGAAGCACC
TGATGCATCATCGTCCCCGTACTACTACCAGCGGCATGCCTACCCAGTGG
CCTCGCAGGAAATGCCCACGGTTTACTGCCCGGCCTATCAACAGCAGCCG
CAACCGGCGACTTATTCCCACCACCCGCATGCGCAACACCAGCAGCAGCT
CCCCACCCAGCCCTACCCCAAAGCTGGCGGCGACGAGTTTTATGATCCCG
AGGCGGCACAAGTGGCAGAGCATGTTCCCTCCTCGTTCATGGAAAACACT
CAAGGCCAAATCCGCCTGGCCTTACTTCGAAAAGTGTATTCAATTTTGAG
CATACAGTTGCTCACTACGGTGGGGGTGGCCTGCCTGTTTTGTTTCAACC
GCAGCGTCAGCGATTTCGTCCTTGCCACGCCCCAGCTCTTCACCCTCGCC
CTCGTCCTGTCCTTTGCCTGCCTAATTGGCCTATTCTGCTTCAAGCAAAA
GCATCCGTGGAACATGGTGTTGCTTGTTGCATTTACGCTTTGTCAGTCCT
TTCTGGTGGGCCTCATTTGCGCCATATACTACCGTCAGGGATCCGGTGAG
CTGGTCTTGCAGGCTTTTGGCATCACGCTGGCTATCTTTGTGGGCCTCAC
CGCCTACACCTATTACAGTGACAAGGACTTCTCCTTCTTAGGAGGGTTTT
GTATGGCAGGTTTGATAGGCTTAATTGTTTGGGGACTCATTTCTTGGCTG
ACGGGCTGGCGCTCGACGTTTTTTTACTCCTTATTTGGCGCTCTCTTGTT
CTCTGCACTTATTGTGTACGACACATGGTTGCTGTCGAAGCGGTTTGGCC
CTGAGCAGGCCATTATTGCCAGCATCATGCTTTACCTTGATATCATTAAC
CTTTTCCTCTTCATCTTGCAGCTTTTGGGCGGCAGCCGGCGTGACTAA
back to top
Synonyms
Publications