jgi.p|Nanoce1779_2|567978, mRNA_7589 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|567978
Unique Name	mRNA_7589
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1647
Alignment location	scaffold_20:320198..321844 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568064
Track	FilteredModels2
ProteinId	567978

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:320198..321844 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567978	gene_7589	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7589	CDS_7589	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567978	mRNA_7589-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:320198..321844-
coding sequence from alignment at scaffold_20:320198..321844-

mRNA sequence

>mRNA_7589 ID=mRNA_7589|Name=jgi.p|Nanoce1779_2|567978|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp
ATGGACGACTGGCGGCCGGTGGGGCAAATGACAAATTTTAAGGCCGTCCT
CGAGGCGGAGGGCGCGGCCTGGTATTATGTGGACAAGGACGGGGAGCAGC
AAGGCCCATCGGAGGCCAAACATATGGCAGCACTGCTGCAAGGTGGCGAA
ATTGATGGCTTGAGCTTGGTCTGGCACCAGAATTTGGCTGGAGGGTGGAA
GCCTCTCTCGGAGGTAGAGGAGCTCCGGCAAGTGGTGCGCCTGTTGATGC
GGCCGGAAGAAGATGAAGATGGGGAAGGCAGTGAACAAAAAAGAGAGGAG
GAGGGAGAGGATAGTGGAGGGGGTAGCGGTAGGGATGGTGCGTCCGTGGT
GGACGAGCGACAGGTATTTTACGGAGACGAGATGCCCACCCGCTCGCTTG
CCGCAGCCTCGGCTGCTGCGAAGAGGTCAAGGAGCGCTCTTAGCGTGAAG
CAATCGTACGTGGCAGATGATGGCACAAAGTATCGGCTGAATCCTCTGAC
GAATGAGTGGGAGGAGGCTGGTTCGGGAGAGGAGAGTGGGGAGGGTGGAG
AGGAAGGTGAAGAGGAAGGCGAGGGAGAGGAAAACGAGGAGGAGGGGAAC
GGCAGCATGGTGCGACAGACCTCGGTGGGGGCACCTCCAAGCGGCGAGGG
CGGGAATGTATCAAAGAGGAAGAAGTCAAAGAAGAAGAAGAAGAATCGTG
GTGGAGAGGGGTGGGACAAGGCGTCCAACAAGTGGGTGTACGTGACGGGC
CTGCCCTCGGACGCGACGGTTGAGGAGCTAGAATCGCATTTCAAGCAGGT
CGGCATCTTGGCGGTGGACCCCGAGACACAGCAACCTCGTGTGAAGATCT
ATCGTGACCCCACGGGCGCACCGAAGGGCGATGCTTCGGTGGCGTACGTC
CGGCCCGAGTCAGTGGAACTGGCCGTGGAGATTCTGAATGGGGGCTTGCT
CCGACCAGGCTGGCCCATGACCATCACCAAGGCCGTATTTCAGCAAAAGT
CAGTTGGTAATGATGGTGTGGAGGGAGGTGGAGGAGGACCCGTAAAGCGG
CGGAAGGTAAATGAAGCCAAAATCAAAGTGGCGCGGGCGGCTGTCAAACA
GGCACTTTCTTGGGCCGAGGCGGACGATACGGGATTAGGGGGCAAAGCAC
TGCGCATCGTGGTGGTAAAGAACATGTTTCATCCCACTCAGTGCCATGCG
CCGGGATTTGTGGAGGAGCTGCAGGAGGATTTGGAAGGGGAATGCTCCTC
GTTGGGACCGCTAGAGAAGATGACTGTATTTGAGAGGCACCCGGAGGGGG
TGGTTGTCATCAAGTTTGGCACGGCCTTCGCGGCGGAGCAGTGTGTCAAG
CTGATGAACGGTCGCTTTTTTGCCGGACGTAAGCTGCAGTCGTCCTACTG
GGACGGTAGCACTGACTACACCAAGGCAGTTTTCCGAGCCGAGAGGCCGC
ATGCGACCACGGGTGCCGAGGAAGAAGGGGGTGGTCAAGGAGAGGAGGAG
GGTAGTGGCGAGGCGGGGAGTACCTTTGTATTCACTACAGAGGACGAGGA
GGCGGCGGAGGAGGATAGGCGGCTGGCGGAGTTTGGGGACGAGCTCGACA
ACCAGGAGCTGCCACCAGAGTTTCAACTGGAGGTGGCGCCTGAGTAA

protein sequence of jgi.p|Nanoce1779_2|567978

>mRNA_7589-protein ID=mRNA_7589-protein|Name=jgi.p|Nanoce1779_2|567978|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MDDWRPVGQMTNFKAVLEAEGAAWYYVDKDGEQQGPSEAKHMAALLQGGE
IDGLSLVWHQNLAGGWKPLSEVEELRQVVRLLMRPEEDEDGEGSEQKREE
EGEDSGGGSGRDGASVVDERQVFYGDEMPTRSLAAASAAAKRSRSALSVK
QSYVADDGTKYRLNPLTNEWEEAGSGEESGEGGEEGEEEGEGEENEEEGN
GSMVRQTSVGAPPSGEGGNVSKRKKSKKKKKNRGGEGWDKASNKWVYVTG
LPSDATVEELESHFKQVGILAVDPETQQPRVKIYRDPTGAPKGDASVAYV
RPESVELAVEILNGGLLRPGWPMTITKAVFQQKSVGNDGVEGGGGGPVKR
RKVNEAKIKVARAAVKQALSWAEADDTGLGGKALRIVVVKNMFHPTQCHA
PGFVEELQEDLEGECSSLGPLEKMTVFERHPEGVVVIKFGTAFAAEQCVK
LMNGRFFAGRKLQSSYWDGSTDYTKAVFRAERPHATTGAEEEGGGQGEEE
GSGEAGSTFVFTTEDEEAAEEDRRLAEFGDELDNQELPPEFQLEVAPE*

mRNA from alignment at scaffold_20:320198..321844-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7589 ID=mRNA_7589|Name=jgi.p|Nanoce1779_2|567978|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp|location=Sequence derived from alignment at scaffold_20:320198..321844- (Nannochloropsis oceanica)
ATGGACGACTGGCGGCCGGTGGGGCAAATGACAAATTTTAAGGCCGTCCT
CGAGGCGGAGGGCGCGGCCTGGTATTATGTGGACAAGGACGGGGAGCAGC
AAGGCCCATCGGAGGCCAAACATATGGCAGCACTGCTGCAAGGTGGCGAA
ATTGATGGCTTGAGCTTGGTCTGGCACCAGAATTTGGCTGGAGGGTGGAA
GCCTCTCTCGGAGGTAGAGGAGCTCCGGCAAGTGGTGCGCCTGTTGATGC
GGCCGGAAGAAGATGAAGATGGGGAAGGCAGTGAACAAAAAAGAGAGGAG
GAGGGAGAGGATAGTGGAGGGGGTAGCGGTAGGGATGGTGCGTCCGTGGT
GGACGAGCGACAGGTATTTTACGGAGACGAGATGCCCACCCGCTCGCTTG
CCGCAGCCTCGGCTGCTGCGAAGAGGTCAAGGAGCGCTCTTAGCGTGAAG
CAATCGTACGTGGCAGATGATGGCACAAAGTATCGGCTGAATCCTCTGAC
GAATGAGTGGGAGGAGGCTGGTTCGGGAGAGGAGAGTGGGGAGGGTGGAG
AGGAAGGTGAAGAGGAAGGCGAGGGAGAGGAAAACGAGGAGGAGGGGAAC
GGCAGCATGGTGCGACAGACCTCGGTGGGGGCACCTCCAAGCGGCGAGGG
CGGGAATGTATCAAAGAGGAAGAAGTCAAAGAAGAAGAAGAAGAATCGTG
GTGGAGAGGGGTGGGACAAGGCGTCCAACAAGTGGGTGTACGTGACGGGC
CTGCCCTCGGACGCGACGGTTGAGGAGCTAGAATCGCATTTCAAGCAGGT
CGGCATCTTGGCGGTGGACCCCGAGACACAGCAACCTCGTGTGAAGATCT
ATCGTGACCCCACGGGCGCACCGAAGGGCGATGCTTCGGTGGCGTACGTC
CGGCCCGAGTCAGTGGAACTGGCCGTGGAGATTCTGAATGGGGGCTTGCT
CCGACCAGGCTGGCCCATGACCATCACCAAGGCCGTATTTCAGCAAAAGT
CAGTTGGTAATGATGGTGTGGAGGGAGGTGGAGGAGGACCCGTAAAGCGG
CGGAAGGTAAATGAAGCCAAAATCAAAGTGGCGCGGGCGGCTGTCAAACA
GGCACTTTCTTGGGCCGAGGCGGACGATACGGGATTAGGGGGCAAAGCAC
TGCGCATCGTGGTGGTAAAGAACATGTTTCATCCCACTCAGTGCCATGCG
CCGGGATTTGTGGAGGAGCTGCAGGAGGATTTGGAAGGGGAATGCTCCTC
GTTGGGACCGCTAGAGAAGATGACTGTATTTGAGAGGCACCCGGAGGGGG
TGGTTGTCATCAAGTTTGGCACGGCCTTCGCGGCGGAGCAGTGTGTCAAG
CTGATGAACGGTCGCTTTTTTGCCGGACGTAAGCTGCAGTCGTCCTACTG
GGACGGTAGCACTGACTACACCAAGGCAGTTTTCCGAGCCGAGAGGCCGC
ATGCGACCACGGGTGCCGAGGAAGAAGGGGGTGGTCAAGGAGAGGAGGAG
GGTAGTGGCGAGGCGGGGAGTACCTTTGTATTCACTACAGAGGACGAGGA
GGCGGCGGAGGAGGATAGGCGGCTGGCGGAGTTTGGGGACGAGCTCGACA
ACCAGGAGCTGCCACCAGAGTTTCAACTGGAGGTGGCGCCTGAGTAA

Coding sequence (CDS) from alignment at scaffold_20:320198..321844-

>mRNA_7589 ID=mRNA_7589|Name=jgi.p|Nanoce1779_2|567978|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at scaffold_20:320198..321844- (Nannochloropsis oceanica)
ATGGACGACTGGCGGCCGGTGGGGCAAATGACAAATTTTAAGGCCGTCCT
CGAGGCGGAGGGCGCGGCCTGGTATTATGTGGACAAGGACGGGGAGCAGC
AAGGCCCATCGGAGGCCAAACATATGGCAGCACTGCTGCAAGGTGGCGAA
ATTGATGGCTTGAGCTTGGTCTGGCACCAGAATTTGGCTGGAGGGTGGAA
GCCTCTCTCGGAGGTAGAGGAGCTCCGGCAAGTGGTGCGCCTGTTGATGC
GGCCGGAAGAAGATGAAGATGGGGAAGGCAGTGAACAAAAAAGAGAGGAG
GAGGGAGAGGATAGTGGAGGGGGTAGCGGTAGGGATGGTGCGTCCGTGGT
GGACGAGCGACAGGTATTTTACGGAGACGAGATGCCCACCCGCTCGCTTG
CCGCAGCCTCGGCTGCTGCGAAGAGGTCAAGGAGCGCTCTTAGCGTGAAG
CAATCGTACGTGGCAGATGATGGCACAAAGTATCGGCTGAATCCTCTGAC
GAATGAGTGGGAGGAGGCTGGTTCGGGAGAGGAGAGTGGGGAGGGTGGAG
AGGAAGGTGAAGAGGAAGGCGAGGGAGAGGAAAACGAGGAGGAGGGGAAC
GGCAGCATGGTGCGACAGACCTCGGTGGGGGCACCTCCAAGCGGCGAGGG
CGGGAATGTATCAAAGAGGAAGAAGTCAAAGAAGAAGAAGAAGAATCGTG
GTGGAGAGGGGTGGGACAAGGCGTCCAACAAGTGGGTGTACGTGACGGGC
CTGCCCTCGGACGCGACGGTTGAGGAGCTAGAATCGCATTTCAAGCAGGT
CGGCATCTTGGCGGTGGACCCCGAGACACAGCAACCTCGTGTGAAGATCT
ATCGTGACCCCACGGGCGCACCGAAGGGCGATGCTTCGGTGGCGTACGTC
CGGCCCGAGTCAGTGGAACTGGCCGTGGAGATTCTGAATGGGGGCTTGCT
CCGACCAGGCTGGCCCATGACCATCACCAAGGCCGTATTTCAGCAAAAGT
CAGTTGGTAATGATGGTGTGGAGGGAGGTGGAGGAGGACCCGTAAAGCGG
CGGAAGGTAAATGAAGCCAAAATCAAAGTGGCGCGGGCGGCTGTCAAACA
GGCACTTTCTTGGGCCGAGGCGGACGATACGGGATTAGGGGGCAAAGCAC
TGCGCATCGTGGTGGTAAAGAACATGTTTCATCCCACTCAGTGCCATGCG
CCGGGATTTGTGGAGGAGCTGCAGGAGGATTTGGAAGGGGAATGCTCCTC
GTTGGGACCGCTAGAGAAGATGACTGTATTTGAGAGGCACCCGGAGGGGG
TGGTTGTCATCAAGTTTGGCACGGCCTTCGCGGCGGAGCAGTGTGTCAAG
CTGATGAACGGTCGCTTTTTTGCCGGACGTAAGCTGCAGTCGTCCTACTG
GGACGGTAGCACTGACTACACCAAGGCAGTTTTCCGAGCCGAGAGGCCGC
ATGCGACCACGGGTGCCGAGGAAGAAGGGGGTGGTCAAGGAGAGGAGGAG
GGTAGTGGCGAGGCGGGGAGTACCTTTGTATTCACTACAGAGGACGAGGA
GGCGGCGGAGGAGGATAGGCGGCTGGCGGAGTTTGGGGACGAGCTCGACA
ACCAGGAGCTGCCACCAGAGTTTCAACTGGAGGTGGCGCCTGAGTAA

Synonyms

Publications