jgi.p|Nanoce1779_2|599262, mRNA_7587 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599262
Unique Name	mRNA_7587
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2029
Alignment location	scaffold_20:314080..316366 +

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Properties


Property Name	Value
TranscriptId	599348
Track	FilteredModels2
ProteinId	599262

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:314080..316366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599262	gene_7587	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599262	mRNA_7587-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7587	CDS_7587	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:314080..316366+
coding sequence from alignment at scaffold_20:314080..316366+

mRNA sequence

>mRNA_7587 ID=mRNA_7587|Name=jgi.p|Nanoce1779_2|599262|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
AGGTCTGGCACTTTTTTCTTGTCAGCAAAACAAGGGTAGCCTTTATTCAG
CAGATCCTCCATCCCTAGCTACCACCTCAGTTATCGACCACCTCAAGAAC
ACCATCACAAGTTGCAGAGCATGAGCGAGGACATTGTGCCCGTCGTGCTG
TACTCTCTATCTGCCGCCGGCCTGCTCTACGTCATCCGCACCCGCAAGCA
TGAGTTGATAGCCCGCAAACCCGATGGCAGCGATGCTTCCTCGCCTCGGG
TCCGGGGCGTCTCGGCCGACCATATTGTTGCCTTAGAGAAATCAGACAAG
GGTGCGCTCATTGATCATCCACGGCGACAAGCGCTCAAGACGGATTTTGT
GGGATTCAGCACCATGCAGCGCAAGTTGATCTTGGTGATGGTCGGATTGC
CGGCCCGAGGCAAGAGTTATATCGTCAAAATGCTCATTCGTTATTTGACC
TGGACGGGTATCCATGCCAAGGTGTTTAATGTGGGTGAGTTTCGTCGTAA
GCTGGGCTTAAGCGGCGTTGACAAATCCTTCTTCGAAGCCAACAACGCGG
AGGCGCAGAAGACGCGAGAGAGCATGGCAGCTCAAGTGTTGGACGAGGCC
TACGAATGGCTGTCGGCGGGGGGGGAGGACGAACCACGCGTTGCGCTGTT
CGACGCAACAAACACCACGCGGTCTCGACGTGAGAACCTCCTGGCACGCA
ATCGGCAAGAGACGAATGCCACTCTGTTGTTTGTAGAGAGTATCTGCGAT
GACGAGGAAATTCTTCACCGGAACTATAGCATGAAGTTGCAGAACAACGA
TTACAAGGGAATGGATCCCGCGGTGGCCCTGGCTGATTTCAAGCAGCGGG
TGAGGGCTTACGAGGAGGTCTATGAAGAGCTGGGGGATGACGAGGACGAG
GGTCAAATCTCTTATATAAAGGTGTACAATGTAGGACGGAAGGTGGTGAC
GAGAAATACGACGGGGTACATCCCCTCGCAGATTGCCTTCTATTTGCAAA
ACATTCACATAGAGCCCCGCAAGATCTGGTTGACGCGCCACGCTGAGTCA
CTGGATCAGGTTAAGAACGTGTTAGGCAGGGACTCAGGAGACCTAACAGA
CGCCGGCCGCCAATATTGCCTCATGCTCACGCGTTTTATCAAGGCGCAGC
AGGAAAAAGTTATGGGCACGGGGCATGAGGTCCTCATCCTGGCCGGGACC
CAGCAAGTCCACCACGCCACCATCGAGCACCTTCAACTCATCTACCCCTG
TGTCTCCACGCCTCTTCTGAACGAGCTGCGTGGCGGTGATCTTGATGGGA
TTGACCGCACGCAGCTTAAGACTCTCTTCCCCGAGGTATGGGAGGGACGG
ATGCAGGACAAGCTTAATTACCGGTATCCTGGTGCTGGGGGAGAGAGTTA
CGCCGATGTCATCCAGCGCATCCGACCTATTATTGTCGAGTTAGAGCGGC
AACGGCGGTCGGTGTTGGTGGTATGTCATTTGGCAGTGCAGCGTTGTTTG
TACGGATACTTCATGGGGACGGCCATGTCGGAGATCCCCTACTTGGATTT
GCCCAAGCATGTAGTTATCGAGCTAACGCCTGGACCGTTTGGTACCACAG
AGAAGGCTGTGCCTTTGTTTGAGCGGGACGGCTTGATAGAATAGGGAGGG
AGAATAGATCAAGAAGGGACGAAGATAGGCGTTGTATATAAATGAATGAG
GACAGAGCACTTCGTTTTCGTTGTTTGTTTGTTTGTGTGTCGTGTGTACA
CACGAGGCACGCGACAAGCATTGAGTAAAGCAGAAGAACCACAGTGTGTG
AATAGAGCAAGCCAGAGATTATTCGGGCTTCGTGGTGAGGCCGAAAGAGA
CGCAGGCATGCATGGCCGCACGTAGGAAAGCGCATTTGTAAAGTCGATAG
TAAAGCGAATCAGTAAAAAGGAAAATTGAAAAAGAAGGGTAAGTAAGCAA
GAATTGAGAAGTCTATTGATAGTTTGTCGAAGCCAAATGCACAAAATCAA
TGACAGAAATTATGGAATAAAGTTGCCAC

protein sequence of jgi.p|Nanoce1779_2|599262

>mRNA_7587-protein ID=mRNA_7587-protein|Name=jgi.p|Nanoce1779_2|599262|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MSEDIVPVVLYSLSAAGLLYVIRTRKHELIARKPDGSDASSPRVRGVSAD
HIVALEKSDKGALIDHPRRQALKTDFVGFSTMQRKLILVMVGLPARGKSY
IVKMLIRYLTWTGIHAKVFNVGEFRRKLGLSGVDKSFFEANNAEAQKTRE
SMAAQVLDEAYEWLSAGGEDEPRVALFDATNTTRSRRENLLARNRQETNA
TLLFVESICDDEEILHRNYSMKLQNNDYKGMDPAVALADFKQRVRAYEEV
YEELGDDEDEGQISYIKVYNVGRKVVTRNTTGYIPSQIAFYLQNIHIEPR
KIWLTRHAESLDQVKNVLGRDSGDLTDAGRQYCLMLTRFIKAQQEKVMGT
GHEVLILAGTQQVHHATIEHLQLIYPCVSTPLLNELRGGDLDGIDRTQLK
TLFPEVWEGRMQDKLNYRYPGAGGESYADVIQRIRPIIVELERQRRSVLV
VCHLAVQRCLYGYFMGTAMSEIPYLDLPKHVVIELTPGPFGTTEKAVPLF
ERDGLIE*

mRNA from alignment at scaffold_20:314080..316366+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7587 ID=mRNA_7587|Name=jgi.p|Nanoce1779_2|599262|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at scaffold_20:314080..316366+ (Nannochloropsis oceanica)
AGGTCTGGCACTTTTTTCTTGTCAGCAAAACAAGGGTAGCCTTTATTCAG
CAGATCCTCCATCCCTAGCTACCACCTCAGTTATCGACCACCTCAAGAAC
ACCATCACAAGTTGCAGAGCATGAGCGAGGACATTGTGCCCGTCGTGCTG
TACTCTCTATCTGCCGCCGGCCTGCTCTACGTCATCCGCACCCGCAAGCA
TGAGTTGATAGCCCGCAAACCCGATGGCAGCGATGCTTCCTCGCCTCGGG
TCCGGGGCGTCTCGGCCGACCATATTGTTGCCTTAGAGAAATCAGACAAG
GGTGCGCTCATTGATCATCCACGGCGACAAGCGCTCAAGACGGATTTTGT
GGGATTCAGCACCATGCAGCGCAAGTTGATCTTGGTGATGGTCGGATTGC
CGGCCCGAGGCAAGAGTTATATCGTCAAAATGCTCATTCGTTATTTGACC
TGGACGGGTATCCATGCCAAGGTGTTTAATGTGGGTGAGTTTCGTCGTAA
GCTGGTGAGTGAGTAGGGGATGGAGTGTGATGGGAGGGGGTGGGGTAGGA
TTTGTGCGTTTAGCGATGGAGCACTGGTCTTTCTCTTTCTCGAGTCTTTT
TTTTTGCGGCATGAATTTGAGAGTTACCTCGGAACCTTCTAATATGTCTG
CGGTGAGATCCCCTCTCTCATTCAGGCTTACGACGAGAAATGTTTTATCA
TAAACAAATCACCCTCTCCTCCCCTTCCTTCCTCTCTCTCCACACTCCCT
TCTCAAAAACAGGGCTTAAGCGGCGTTGACAAATCCTTCTTCGAAGCCAA
CAACGCGGAGGCGCAGAAGACGCGAGAGAGCATGGCAGCTCAAGTGTTGG
ACGAGGCCTACGAATGGCTGTCGGCGGGGGGGGAGGACGAACCACGCGTT
GCGCTGTTCGACGCAACAAACACCACGCGGTCTCGACGTGAGAACCTCCT
GGCACGCAATCGGCAAGAGACGAATGCCACTCTGTTGTTTGTAGAGAGTA
TCTGCGATGACGAGGAAATTCTTCACCGGAACTATAGCATGAAGTTGCAG
AACAACGATTACAAGGGAATGGATCCCGCGGTGGCCCTGGCTGATTTCAA
GCAGCGGGTGAGGGCTTACGAGGAGGTCTATGAAGAGCTGGGGGATGACG
AGGACGAGGGTCAAATCTCTTATATAAAGGTGTACAATGTAGGACGGAAG
GTGGTGACGAGAAATACGACGGGGTACATCCCCTCGCAGATTGCCTTCTA
TTTGCAAAACATTCACATAGAGCCCCGCAAGATCTGGTTGACGCGCCACG
CTGAGTCACTGGATCAGGTTAAGAACGTGTTAGGCAGGGACTCAGGAGAC
CTAACAGACGCCGGCCGCCAATATTGCCTCATGCTCACGCGTTTTATCAA
GGCGCAGCAGGAAAAAGTTATGGGCACGGGGCATGAGGTCCTCATCCTGG
CCGGGACCCAGCAAGTCCACCACGCCACCATCGAGCACCTTCAACTCATC
TACCCCTGTGTCTCCACGCCTCTTCTGAACGAGCTGCGTGGCGGTGATCT
TGATGGGATTGACCGCACGCAGCTTAAGACTCTCTTCCCCGAGGTATGGG
AGGGACGGATGCAGGACAAGCTTAATTACCGGTATCCTGGTGCTGGGGGA
GAGAGTTACGCCGATGTCATCCAGCGCATCCGACCTATTATTGTCGAGTT
AGAGCGGCAACGGCGGTCGGTGTTGGTGGTATGTCATTTGGCAGTGCAGC
GTTGTTTGTACGGATACTTCATGGGGACGGCCATGTCGGAGATCCCCTAC
TTGGATTTGCCCAAGCATGTAGTTATCGAGCTAACGCCTGGACCGTTTGG
TACCACAGAGAAGGCTGTGCCTTTGTTTGAGCGGGACGGCTTGATAGAAT
AGGGAGGGAGAATAGATCAAGAAGGGACGAAGATAGGCGTTGTATATAAA
TGAATGAGGACAGAGCACTTCGTTTTCGTTGTTTGTTTGTTTGTGTGTCG
TGTGTACACACGAGGCACGCGACAAGCATTGAGTAAAGCAGAAGAACCAC
AGTGTGTGAATAGAGCAAGCCAGAGATTATTCGGGCTTCGTGGTGAGGCC
GAAAGAGACGCAGGCATGCATGGCCGCACGTAGGAAAGCGCATTTGTAAA
GTCGATAGTAAAGCGAATCAGTAAAAAGGAAAATTGAAAAAGAAGGGTAA
GTAAGCAAGAATTGAGAAGTCTATTGATAGTTTGTCGAAGCCAAATGCAC
AAAATCAATGACAGAAATTATGGAATAAAGTTGCCAC

Coding sequence (CDS) from alignment at scaffold_20:314080..316366+

>mRNA_7587 ID=mRNA_7587|Name=jgi.p|Nanoce1779_2|599262|organism=Nannochloropsis oceanica|type=CDS|length=3048bp|location=Sequence derived from alignment at scaffold_20:314080..316366+ (Nannochloropsis oceanica)
ATGAGCGAGGACATTGTGCCCGTCGTGCTGTACTCTCTATCTGCCGCCGG
CCTGCTCTACGTCATCCGCACCCGCAAGCATGAGTTGATAGCCCGCAAAC
CCGATGGCAGCGATGCTTCCTCGCCTCGGGTCCGGGGCGTCTCGGCCGAC
CATATTGTTGCCTTAGAGAAATCAGACAAGGGTGCGCTCATTGATCATCC
ACGGCGACAAGCGCTCAAGACGGATTTTGTGGGATTCAGCACCATGCAGC
GCAAGTTGATCTTGGTGATGGTCGGATTGCCGGCCCGAGGCAAGAGTTAT
ATCGTCAAAATGCTCATTCGTTATTTGACCTGGACGGGTATCCATGCCAA
GGTGTTTAATGTGGGTGAGTTTCGTCGTAAGCTGGGCTTAAGCGGCGTTG
ACAAATCCTTCTTCGAAGCCAACAACGCGGAGGCGCAGAAGACGCGAGAG
AGCATGGCAGCTCAAGTGTTGGACGAGGCCTACGAATGGCTGTCGGCGGG
GGGGGAGGACGAACCACGCGTTGCGCTGTTCGACGCAACAAACACCACGC
GGTCTCGACGTGAGAACCTCCTGGCACGCAATCGGCAAGAGACGAATGCC
ACTCTGTTGTTTGTAGAGAGTATCTGCGATGACGAGGAAATTCTTCACCG
GAACTATAGCATGAAGTTGCAGAACAACGATTACAAGGGAATGGATCCCG
CGGTGGCCCTGGCTGATTTCAAGCAGCGGGTGAGGGCTTACGAGGAGGTC
TATGAAGAGCTGGGGGATGACGAGGACGAGGGTCAAATCTCTTATATAAA
GGTGTACAATGTAGGACGGAAGGTGGTGACGAGAAATACGACGGGGTACA
TCCCCTCGCAGATTGCCTTCTATTTGCAAAACATTCACATAGAGCCCCGC
AAGATCTGGTTGACGCGCCACGCTGAGTCACTGGATCAGGTTAAGAACGT
GTTAGGCAGGGACTCAGGAGACCTAACAGACGCCGGCCGCCAATATTGCC
TCATGCTCACGCGTTTTATCAAGGCGCAGCAGGAAAAAGTTATGGGCACG
GGGCATGAGGTCCTCATCCTGGCCGGGACCCAGCAAGTCCACCACGCCAC
CATCGAGCACCTTCAACTCATCTACCCCTGTGTCTCCACGCCTCTTCTGA
ACGAGCTGCGTGGCGGTGATCTTGATGGGATTGACCGCACGCAGCTTAAG
ACTCTCTTCCCCGAGGTATGGGAGGGACGGATGCAGGACAAGCTTAATTA
CCGGTATCCTGGTGCTGGGGGAGAGAGTTACGCCGATGTCATCCAGCGCA
TCCGACCTATTATTGTCGAGTTAGAGCGGCAACGGCGGTCGGTGTTGGTG
GTATGTCATTTGGCAGTGCAGCGTTGTTTGTACGGATACTTCATGGGGAC
GGCCATGTCGGAGATCCCCTACTTGGATTTGCCCAAGCATGTAGTTATCG
AGCTAACGCCTGGACCGTTTGGTACCACAGAGAAGGCTGTGCCTTTGTTT
GAGCGGGACGGCTTGATAGAATAGATGAGCGAGGACATTGTGCCCGTCGT
GCTGTACTCTCTATCTGCCGCCGGCCTGCTCTACGTCATCCGCACCCGCA
AGCATGAGTTGATAGCCCGCAAACCCGATGGCAGCGATGCTTCCTCGCCT
CGGGTCCGGGGCGTCTCGGCCGACCATATTGTTGCCTTAGAGAAATCAGA
CAAGGGTGCGCTCATTGATCATCCACGGCGACAAGCGCTCAAGACGGATT
TTGTGGGATTCAGCACCATGCAGCGCAAGTTGATCTTGGTGATGGTCGGA
TTGCCGGCCCGAGGCAAGAGTTATATCGTCAAAATGCTCATTCGTTATTT
GACCTGGACGGGTATCCATGCCAAGGTGTTTAATGTGGGTGAGTTTCGTC
GTAAGCTGGGCTTAAGCGGCGTTGACAAATCCTTCTTCGAAGCCAACAAC
GCGGAGGCGCAGAAGACGCGAGAGAGCATGGCAGCTCAAGTGTTGGACGA
GGCCTACGAATGGCTGTCGGCGGGGGGGGAGGACGAACCACGCGTTGCGC
TGTTCGACGCAACAAACACCACGCGGTCTCGACGTGAGAACCTCCTGGCA
CGCAATCGGCAAGAGACGAATGCCACTCTGTTGTTTGTAGAGAGTATCTG
CGATGACGAGGAAATTCTTCACCGGAACTATAGCATGAAGTTGCAGAACA
ACGATTACAAGGGAATGGATCCCGCGGTGGCCCTGGCTGATTTCAAGCAG
CGGGTGAGGGCTTACGAGGAGGTCTATGAAGAGCTGGGGGATGACGAGGA
CGAGGGTCAAATCTCTTATATAAAGGTGTACAATGTAGGACGGAAGGTGG
TGACGAGAAATACGACGGGGTACATCCCCTCGCAGATTGCCTTCTATTTG
CAAAACATTCACATAGAGCCCCGCAAGATCTGGTTGACGCGCCACGCTGA
GTCACTGGATCAGGTTAAGAACGTGTTAGGCAGGGACTCAGGAGACCTAA
CAGACGCCGGCCGCCAATATTGCCTCATGCTCACGCGTTTTATCAAGGCG
CAGCAGGAAAAAGTTATGGGCACGGGGCATGAGGTCCTCATCCTGGCCGG
GACCCAGCAAGTCCACCACGCCACCATCGAGCACCTTCAACTCATCTACC
CCTGTGTCTCCACGCCTCTTCTGAACGAGCTGCGTGGCGGTGATCTTGAT
GGGATTGACCGCACGCAGCTTAAGACTCTCTTCCCCGAGGTATGGGAGGG
ACGGATGCAGGACAAGCTTAATTACCGGTATCCTGGTGCTGGGGGAGAGA
GTTACGCCGATGTCATCCAGCGCATCCGACCTATTATTGTCGAGTTAGAG
CGGCAACGGCGGTCGGTGTTGGTGGTATGTCATTTGGCAGTGCAGCGTTG
TTTGTACGGATACTTCATGGGGACGGCCATGTCGGAGATCCCCTACTTGG
ATTTGCCCAAGCATGTAGTTATCGAGCTAACGCCTGGACCGTTTGGTACC
ACAGAGAAGGCTGTGCCTTTGTTTGAGCGGGACGGCTTGATAGAATAG

Synonyms

Publications