jgi.p|Nanoce1779_2|599252, mRNA_7582 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599252
Unique NamemRNA_7582
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length904
Alignment locationscaffold_20:308668..309571 -

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Properties
Property NameValue
TranscriptId599338
TrackFilteredModels2
ProteinId599252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:308668..309571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599252gene_7582Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599252mRNA_7582-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7582CDS_7582Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7582 ID=mRNA_7582|Name=jgi.p|Nanoce1779_2|599252|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
ACAGCACACACACCCATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGC
TACCTCCATGATCCTCTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCG
TCCGCGCATGCCTACCCCTGGACGGTATGAACGCGGGCGTGACGCTCAAC
AGGGGCACACATGTCTGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGG
CACTAGCAACTACTCCCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTG
CGCGACTGCAATTTTCAGACACCTACTCAAACGTTCCGATGGGGGGCATC
ACGGATTTATACGGGCCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGT
GACTTCTTTTCAAAAGCTCTACCGGCAGGAGGACCCTCTGGGCCGGACAT
TCCCCATCTTGACTGCCATAATTAATCTGGACCGTGGCGTCGTGACGGGC
ATCACCTTCGATAATGGCTGTGTGCTCTGCAACAATAGCGACCGGTGCGT
GGAGAACACGTACGATTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCA
CCTCGGATTGCTTCTTGACAGACGCCGAGTGCGCGGCCAATACTCAGGCC
GACCCCAGGGCCTGTCAGCTCACTGTATACGTGACGTGGACGGGCACAGA
TGCCAAGGGTAACTTCTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTA
GTTCTTACTCTGTTAATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
GACAGCGTTTCTCTTCGGGAGGAATGATGAGGGAAAGGATAGTAGAAGGA
TGGAGGAAAGTGTTTGGCTTGTCATATATTTGTATTCAACTAATGCTCTT
TCATCTCTTCGAAAGAAGTGAAAATAAAGAAAGAAAGAAAGACACTTGTT
TTAA
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protein sequence of jgi.p|Nanoce1779_2|599252

>mRNA_7582-protein ID=mRNA_7582-protein|Name=jgi.p|Nanoce1779_2|599252|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPASSRRGALPATSMILFLAVLLLLQTVVRACLPLDGMNAGVTLNRGTHV
CVVLSTPEWVDGTSNYSRLAFTPNVDKFARLQFSDTYSNVPMGGITDLYG
PNVAVHVESMGVTSFQKLYRQEDPLGRTFPILTAIINLDRGVVTGITFDN
GCVLCNNSDRCVENTYDFLGELYSGVGATSDCFLTDAECAANTQADPRAC
QLTVYVTWTGTDAKGNFLTSSSRRFSLFSSYSVNSYVNGLVKGV*
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mRNA from alignment at scaffold_20:308668..309571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7582 ID=mRNA_7582|Name=jgi.p|Nanoce1779_2|599252|organism=Nannochloropsis oceanica|type=mRNA|length=904bp|location=Sequence derived from alignment at scaffold_20:308668..309571- (Nannochloropsis oceanica)
ACAGCACACACACCCATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGC
TACCTCCATGATCCTCTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCG
TCCGCGCATGCCTACCCCTGGACGGTATGAACGCGGGCGTGACGCTCAAC
AGGGGCACACATGTCTGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGG
CACTAGCAACTACTCCCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTG
CGCGACTGCAATTTTCAGACACCTACTCAAACGTTCCGATGGGGGGCATC
ACGGATTTATACGGGCCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGT
GACTTCTTTTCAAAAGCTCTACCGGCAGGAGGACCCTCTGGGCCGGACAT
TCCCCATCTTGACTGCCATAATTAATCTGGACCGTGGCGTCGTGACGGGC
ATCACCTTCGATAATGGCTGTGTGCTCTGCAACAATAGCGACCGGTGCGT
GGAGAACACGTACGATTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCA
CCTCGGATTGCTTCTTGACAGACGCCGAGTGCGCGGCCAATACTCAGGCC
GACCCCAGGGCCTGTCAGCTCACTGTATACGTGACGTGGACGGGCACAGA
TGCCAAGGGTAACTTCTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTA
GTTCTTACTCTGTTAATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
GACAGCGTTTCTCTTCGGGAGGAATGATGAGGGAAAGGATAGTAGAAGGA
TGGAGGAAAGTGTTTGGCTTGTCATATATTTGTATTCAACTAATGCTCTT
TCATCTCTTCGAAAGAAGTGAAAATAAAGAAAGAAAGAAAGACACTTGTT
TTAA
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Coding sequence (CDS) from alignment at scaffold_20:308668..309571-

>mRNA_7582 ID=mRNA_7582|Name=jgi.p|Nanoce1779_2|599252|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_20:308668..309571- (Nannochloropsis oceanica)
ATGCCAGCCTCCTCAAGAAGAGGTGCCCTCCCTGCTACCTCCATGATCCT
CTTCCTCGCCGTCCTCCTCCTCTTACAGACTGTCGTCCGCGCATGCCTAC
CCCTGGACGGTATGAACGCGGGCGTGACGCTCAACAGGGGCACACATGTC
TGCGTCGTCCTCTCCACACCCGAGTGGGTAGATGGCACTAGCAACTACTC
CCGCCTGGCCTTTACGCCCAACGTGGACAAGTTTGCGCGACTGCAATTTT
CAGACACCTACTCAAACGTTCCGATGGGGGGCATCACGGATTTATACGGG
CCCAACGTGGCCGTGCACGTGGAGAGCATGGGTGTGACTTCTTTTCAAAA
GCTCTACCGGCAGGAGGACCCTCTGGGCCGGACATTCCCCATCTTGACTG
CCATAATTAATCTGGACCGTGGCGTCGTGACGGGCATCACCTTCGATAAT
GGCTGTGTGCTCTGCAACAATAGCGACCGGTGCGTGGAGAACACGTACGA
TTTCCTGGGGGAGCTGTACTCGGGTGTGGGAGCCACCTCGGATTGCTTCT
TGACAGACGCCGAGTGCGCGGCCAATACTCAGGCCGACCCCAGGGCCTGT
CAGCTCACTGTATACGTGACGTGGACGGGCACAGATGCCAAGGGTAACTT
CTTGACGAGTTCCAGCCGTCGCTTTTCGCTTTTTAGTTCTTACTCTGTTA
ATTCTTATGTGAATGGTTTGGTGAAGGGCGTCTAA
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Synonyms
Publications