jgi.p|Nanoce1779_2|641249, mRNA_7581 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|641249
Unique Name	mRNA_7581
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1605
Alignment location	scaffold_20:306914..308518 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	641335
Track	FilteredModels2
ProteinId	641249

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:306914..308518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641249	gene_7581	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641249	mRNA_7581-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7581	CDS_7581	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:306914..308518+
coding sequence from alignment at scaffold_20:306914..308518+

mRNA sequence

>mRNA_7581 ID=mRNA_7581|Name=jgi.p|Nanoce1779_2|641249|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGTGGGTGGCGGTGGAGGGGGTGGGTCGGAGGATCTGTT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAGAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGCGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGGAGGCG
GGGAGCAAGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG

protein sequence of jgi.p|Nanoce1779_2|641249

>mRNA_7581-protein ID=mRNA_7581-protein|Name=jgi.p|Nanoce1779_2|641249|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MLHFLLFLPVAAAQRQQQHKERDSFYEVLKLTPDALPADVKKAYRKLALQ
YHPDKVKPEQKEEAARIFAAIAEAYETLSDANRRREYDLARQRDEQEVRF
REQHRGGHQFHFEGGFDFGGTEEMGGGRYSEWGGWDGGEEWVFSDPFQLF
EQFFVGGGGGGGSEDLLADYYDEGEDEMGGKEERVVFEEEERYVLGGHEY
LRTQRVFNNGRIEVETTELPSRGVGGRGGRGGGGEGGGRREKLHQRPSPL
SPPGIRAGEIVSTVLYVLRMEETLEVGEHLLSSNGLYACYVDPREGRLVV
SRNMPGGERVWESEEEDDKDEDKGDPEKVLAKQQRRRGRQQLLQNSRLAA
TVSRQGRVELWALGGGPLSGGTLLLWRSTEEVGGPYLDDDLSDYEYVLSL
SGKDGNLVLRSIARLQQQHQEGEEGEAEKEEEEECIWASRGCPGERMDSQ
QALQALGRRVLVPLLRQWRSGFKALVAFTKHCLPGLKKGAVRLQGLMKEA
GSKLKNVVANRWQQQQQQQQQYHRKKWKKQQGRK*

mRNA from alignment at scaffold_20:306914..308518+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7581 ID=mRNA_7581|Name=jgi.p|Nanoce1779_2|641249|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at scaffold_20:306914..308518+ (Nannochloropsis oceanica)
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGTGGGTGGCGGTGGAGGGGGTGGGTCGGAGGATCTGTT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAGAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGCGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGGAGGCG
GGGAGCAAGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG

Coding sequence (CDS) from alignment at scaffold_20:306914..308518+

>mRNA_7581 ID=mRNA_7581|Name=jgi.p|Nanoce1779_2|641249|organism=Nannochloropsis oceanica|type=CDS|length=1605bp|location=Sequence derived from alignment at scaffold_20:306914..308518+ (Nannochloropsis oceanica)
ATGCTCCACTTCCTCCTATTCCTTCCTGTGGCAGCAGCACAAAGACAGCA
GCAACATAAAGAACGCGACAGCTTCTACGAAGTGCTAAAGCTCACACCGG
ATGCCTTGCCCGCGGACGTGAAGAAAGCATACAGAAAGCTGGCCCTGCAA
TACCACCCAGACAAGGTAAAGCCCGAGCAAAAAGAAGAGGCGGCCCGCAT
CTTTGCTGCCATCGCAGAGGCTTACGAAACCCTCTCCGACGCCAACAGGC
GCCGAGAGTATGACTTGGCTCGGCAGCGCGACGAGCAAGAGGTCCGCTTC
CGGGAGCAGCACCGCGGAGGTCACCAATTCCACTTTGAGGGGGGCTTTGA
CTTCGGAGGCACGGAAGAAATGGGTGGTGGGCGTTATTCGGAATGGGGCG
GTTGGGATGGCGGGGAAGAATGGGTATTTTCGGACCCGTTTCAGCTCTTT
GAGCAATTTTTTGTGGGTGGCGGTGGAGGGGGTGGGTCGGAGGATCTGTT
AGCAGATTACTATGACGAGGGGGAGGATGAGATGGGGGGCAAGGAGGAAA
GAGTGGTGTTTGAAGAGGAGGAGCGGTATGTCCTGGGAGGACATGAGTAT
TTGCGCACTCAACGGGTCTTTAACAATGGCCGGATTGAGGTGGAGACGAC
GGAACTTCCAAGTAGAGGTGTAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGAAGGAGGAGGAAGGAGAGAAAAGCTGCACCAGCGTCCGTCGCCTCTA
TCACCACCTGGGATCCGCGCCGGAGAAATTGTGTCCACTGTCTTGTATGT
ATTGCGCATGGAGGAAACGCTGGAGGTGGGGGAGCATCTGCTTTCCTCAA
ACGGGCTGTACGCCTGCTACGTCGACCCAAGGGAAGGGAGGCTGGTGGTT
TCGAGAAATATGCCGGGCGGGGAAAGAGTTTGGGAGTCCGAGGAGGAGGA
TGACAAGGACGAGGACAAAGGTGACCCTGAAAAGGTGTTGGCGAAGCAAC
AGCGGCGACGGGGGCGGCAGCAGCTGCTGCAGAATAGCCGCCTAGCAGCC
ACTGTATCGAGGCAGGGAAGGGTGGAGCTGTGGGCGTTGGGAGGTGGCCC
CTTAAGTGGGGGAACTTTGTTGTTGTGGAGATCAACGGAGGAAGTGGGTG
GACCGTACTTGGATGATGATCTGAGTGATTACGAATACGTGCTGTCGCTG
TCGGGGAAGGACGGAAATCTGGTGCTGAGGTCCATTGCAAGGCTGCAGCA
GCAGCACCAGGAGGGAGAGGAAGGAGAGGCGGAGAAGGAGGAAGAGGAGG
AGTGCATCTGGGCGAGTCGAGGTTGTCCTGGGGAGAGAATGGACTCGCAG
CAAGCGTTGCAGGCGCTCGGGCGGCGGGTGCTTGTCCCCTTGTTGAGGCA
GTGGAGGTCGGGCTTCAAGGCATTGGTCGCCTTCACCAAGCATTGCTTGC
CTGGACTGAAGAAGGGTGCTGTGCGGTTGCAGGGCTTGATGAAGGAGGCG
GGGAGCAAGCTAAAGAATGTTGTGGCGAATAGGTGGCAGCAGCAGCAGCA
GCAACAGCAACAATATCACAGGAAGAAATGGAAGAAGCAGCAAGGGAGGA
AGTAG

Synonyms

Publications