jgi.p|Nanoce1779_2|531739, mRNA_7580 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531739
Unique NamemRNA_7580
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1458
Alignment locationscaffold_20:305026..306483 -

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Properties
Property NameValue
TranscriptId531825
TrackFilteredModels2
ProteinId531739
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:305026..306483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531739gene_7580Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7580CDS_7580Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531739mRNA_7580-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7580 ID=mRNA_7580|Name=jgi.p|Nanoce1779_2|531739|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGTGGTTGCTCCTGTCGCCAAGACCGCTGGGTGGGGGATCCGCCTTAAA
CCTTAAGGGGATCAACGAGTGGTCATATTGTCAGGCTCCTCTCAAGGGCG
ATGAGGGAGTCTTGCCCGCAGAGGCACGTCCTCGGGAGCTAAAGCAAGTC
CAGTTAGTCATACGGCACGGAGATCGCTCGCCCATAACCAAGTTGACCAC
ACCTCCGCTGGACTTTGACTGCAAAATCAAGGACCCCGCAATGCGTCTGG
TGGCGGAGCTCGTGCGGGAACGCTTCCACGTCGCTGGCATCCAGGGCAAG
GCGTCTCTCGATTACCTCACACGGGCCTTGCTTCTTCCTACTAACGACTC
GCAACAAACAATTTTTTCCGGTTTGGGAAAAGGAGCAGGCAAGAACACAG
CTGGTGGGGAGGACCAGGCTTGCTTTCCTGGTCAGTTGACGGAACGAGGC
GTCCGACAGCAGGTCTTCAACGGCCAATACTTGCAAGAGAGGTACGGGAA
GGCTTTGGGCGTGACGGATATTGAGACAGAGGTGTATTTCCGCAGCACCA
ATTATCCCCGAACCTTTATCTCGGGCGCGGCGTTGCTGCTCAACTTTTTG
GCACCCCTGGTCCCGGACCGCTTGCCGGTGATTGTGCAGGAGGATAACAA
CAAGGAGGCTCTTTTCGGGAGGGGTCTGATCGGTGCCTCCCGTGCGCGCA
ACGTAGACCCATTCGAGAGTCCCAATGACGAGCGAGGGCCGTGCGAGGTC
GCCTTTAAACTGGGGGCTCAGCAAGAGAAGGCGTTTTCAATTGACGCTGA
ACTAGAGCAAGCTTTCTTTGAAGAGCTCAATCTCACGCCCGCCGCAGAGG
CAGAAGCACGGCTTTTGTCCGTGGCGGATGCGACGGATCCATTGATGGGA
ATGGCGTGTTACAAGCACCCTTTGCCAGTACATAGGAGTTTAGTGCGTAG
TCTGAAGAAGGAGACGGATCGCATGTTTTGTGAGCGGTACGCGGGGGCGG
AGGGCGGTAGGGAGGGGACACGGTTGGGGATGCAACCCTTCCTTCAAGAA
GTTTTGGGACGGTTTCAGAACTATGGAACGACGAGGCTAAAGCTTGCCCT
GTACTCGGCCCATGACACTGTCCTTTCCCCCTTGCTTGGTGCCCTAGACG
TGCTAGACAAGCATTGCTACTGGCCACCTTATGCCAGCCGGGTTGTCTTT
GAGATGTGGGGCCCGCCCGCGAGGCCAGAAGGCCGGGCGCAGGAGAAGGA
GGGAGGTAGTGAAGAAGACTCGGTCCGCATATTGTATAATGGCGAGGTGG
TGTCGCGGAGAAGTTTGCACTGCCCAGGGTACAAAGCCAAGGGCAGGAAT
GAAGAAGTCTTATTTATGGAGGAAGAGACCCTTCTTCCGCTTGGGTGCCT
TCAAGAATATATTGAAGGCATGTCCATTCTGGGCGAAGAAAAATTTGCGT
GCGTGTAA
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protein sequence of jgi.p|Nanoce1779_2|531739

>mRNA_7580-protein ID=mRNA_7580-protein|Name=jgi.p|Nanoce1779_2|531739|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MWLLLSPRPLGGGSALNLKGINEWSYCQAPLKGDEGVLPAEARPRELKQV
QLVIRHGDRSPITKLTTPPLDFDCKIKDPAMRLVAELVRERFHVAGIQGK
ASLDYLTRALLLPTNDSQQTIFSGLGKGAGKNTAGGEDQACFPGQLTERG
VRQQVFNGQYLQERYGKALGVTDIETEVYFRSTNYPRTFISGAALLLNFL
APLVPDRLPVIVQEDNNKEALFGRGLIGASRARNVDPFESPNDERGPCEV
AFKLGAQQEKAFSIDAELEQAFFEELNLTPAAEAEARLLSVADATDPLMG
MACYKHPLPVHRSLVRSLKKETDRMFCERYAGAEGGREGTRLGMQPFLQE
VLGRFQNYGTTRLKLALYSAHDTVLSPLLGALDVLDKHCYWPPYASRVVF
EMWGPPARPEGRAQEKEGGSEEDSVRILYNGEVVSRRSLHCPGYKAKGRN
EEVLFMEEETLLPLGCLQEYIEGMSILGEEKFACV*
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mRNA from alignment at scaffold_20:305026..306483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7580 ID=mRNA_7580|Name=jgi.p|Nanoce1779_2|531739|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_20:305026..306483- (Nannochloropsis oceanica)
ATGTGGTTGCTCCTGTCGCCAAGACCGCTGGGTGGGGGATCCGCCTTAAA
CCTTAAGGGGATCAACGAGTGGTCATATTGTCAGGCTCCTCTCAAGGGCG
ATGAGGGAGTCTTGCCCGCAGAGGCACGTCCTCGGGAGCTAAAGCAAGTC
CAGTTAGTCATACGGCACGGAGATCGCTCGCCCATAACCAAGTTGACCAC
ACCTCCGCTGGACTTTGACTGCAAAATCAAGGACCCCGCAATGCGTCTGG
TGGCGGAGCTCGTGCGGGAACGCTTCCACGTCGCTGGCATCCAGGGCAAG
GCGTCTCTCGATTACCTCACACGGGCCTTGCTTCTTCCTACTAACGACTC
GCAACAAACAATTTTTTCCGGTTTGGGAAAAGGAGCAGGCAAGAACACAG
CTGGTGGGGAGGACCAGGCTTGCTTTCCTGGTCAGTTGACGGAACGAGGC
GTCCGACAGCAGGTCTTCAACGGCCAATACTTGCAAGAGAGGTACGGGAA
GGCTTTGGGCGTGACGGATATTGAGACAGAGGTGTATTTCCGCAGCACCA
ATTATCCCCGAACCTTTATCTCGGGCGCGGCGTTGCTGCTCAACTTTTTG
GCACCCCTGGTCCCGGACCGCTTGCCGGTGATTGTGCAGGAGGATAACAA
CAAGGAGGCTCTTTTCGGGAGGGGTCTGATCGGTGCCTCCCGTGCGCGCA
ACGTAGACCCATTCGAGAGTCCCAATGACGAGCGAGGGCCGTGCGAGGTC
GCCTTTAAACTGGGGGCTCAGCAAGAGAAGGCGTTTTCAATTGACGCTGA
ACTAGAGCAAGCTTTCTTTGAAGAGCTCAATCTCACGCCCGCCGCAGAGG
CAGAAGCACGGCTTTTGTCCGTGGCGGATGCGACGGATCCATTGATGGGA
ATGGCGTGTTACAAGCACCCTTTGCCAGTACATAGGAGTTTAGTGCGTAG
TCTGAAGAAGGAGACGGATCGCATGTTTTGTGAGCGGTACGCGGGGGCGG
AGGGCGGTAGGGAGGGGACACGGTTGGGGATGCAACCCTTCCTTCAAGAA
GTTTTGGGACGGTTTCAGAACTATGGAACGACGAGGCTAAAGCTTGCCCT
GTACTCGGCCCATGACACTGTCCTTTCCCCCTTGCTTGGTGCCCTAGACG
TGCTAGACAAGCATTGCTACTGGCCACCTTATGCCAGCCGGGTTGTCTTT
GAGATGTGGGGCCCGCCCGCGAGGCCAGAAGGCCGGGCGCAGGAGAAGGA
GGGAGGTAGTGAAGAAGACTCGGTCCGCATATTGTATAATGGCGAGGTGG
TGTCGCGGAGAAGTTTGCACTGCCCAGGGTACAAAGCCAAGGGCAGGAAT
GAAGAAGTCTTATTTATGGAGGAAGAGACCCTTCTTCCGCTTGGGTGCCT
TCAAGAATATATTGAAGGCATGTCCATTCTGGGCGAAGAAAAATTTGCGT
GCGTGTAA
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Coding sequence (CDS) from alignment at scaffold_20:305026..306483-

>mRNA_7580 ID=mRNA_7580|Name=jgi.p|Nanoce1779_2|531739|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_20:305026..306483- (Nannochloropsis oceanica)
ATGTGGTTGCTCCTGTCGCCAAGACCGCTGGGTGGGGGATCCGCCTTAAA
CCTTAAGGGGATCAACGAGTGGTCATATTGTCAGGCTCCTCTCAAGGGCG
ATGAGGGAGTCTTGCCCGCAGAGGCACGTCCTCGGGAGCTAAAGCAAGTC
CAGTTAGTCATACGGCACGGAGATCGCTCGCCCATAACCAAGTTGACCAC
ACCTCCGCTGGACTTTGACTGCAAAATCAAGGACCCCGCAATGCGTCTGG
TGGCGGAGCTCGTGCGGGAACGCTTCCACGTCGCTGGCATCCAGGGCAAG
GCGTCTCTCGATTACCTCACACGGGCCTTGCTTCTTCCTACTAACGACTC
GCAACAAACAATTTTTTCCGGTTTGGGAAAAGGAGCAGGCAAGAACACAG
CTGGTGGGGAGGACCAGGCTTGCTTTCCTGGTCAGTTGACGGAACGAGGC
GTCCGACAGCAGGTCTTCAACGGCCAATACTTGCAAGAGAGGTACGGGAA
GGCTTTGGGCGTGACGGATATTGAGACAGAGGTGTATTTCCGCAGCACCA
ATTATCCCCGAACCTTTATCTCGGGCGCGGCGTTGCTGCTCAACTTTTTG
GCACCCCTGGTCCCGGACCGCTTGCCGGTGATTGTGCAGGAGGATAACAA
CAAGGAGGCTCTTTTCGGGAGGGGTCTGATCGGTGCCTCCCGTGCGCGCA
ACGTAGACCCATTCGAGAGTCCCAATGACGAGCGAGGGCCGTGCGAGGTC
GCCTTTAAACTGGGGGCTCAGCAAGAGAAGGCGTTTTCAATTGACGCTGA
ACTAGAGCAAGCTTTCTTTGAAGAGCTCAATCTCACGCCCGCCGCAGAGG
CAGAAGCACGGCTTTTGTCCGTGGCGGATGCGACGGATCCATTGATGGGA
ATGGCGTGTTACAAGCACCCTTTGCCAGTACATAGGAGTTTAGTGCGTAG
TCTGAAGAAGGAGACGGATCGCATGTTTTGTGAGCGGTACGCGGGGGCGG
AGGGCGGTAGGGAGGGGACACGGTTGGGGATGCAACCCTTCCTTCAAGAA
GTTTTGGGACGGTTTCAGAACTATGGAACGACGAGGCTAAAGCTTGCCCT
GTACTCGGCCCATGACACTGTCCTTTCCCCCTTGCTTGGTGCCCTAGACG
TGCTAGACAAGCATTGCTACTGGCCACCTTATGCCAGCCGGGTTGTCTTT
GAGATGTGGGGCCCGCCCGCGAGGCCAGAAGGCCGGGCGCAGGAGAAGGA
GGGAGGTAGTGAAGAAGACTCGGTCCGCATATTGTATAATGGCGAGGTGG
TGTCGCGGAGAAGTTTGCACTGCCCAGGGTACAAAGCCAAGGGCAGGAAT
GAAGAAGTCTTATTTATGGAGGAAGAGACCCTTCTTCCGCTTGGGTGCCT
TCAAGAATATATTGAAGGCATGTCCATTCTGGGCGAAGAAAAATTTGCGT
GCGTGTAA
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Synonyms
Publications