jgi.p|Nanoce1779_2|574033, mRNA_758 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574033
Unique NamemRNA_758
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_2:366988..367941 -

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Properties
Property NameValue
TranscriptId574119
TrackFilteredModels2
ProteinId574033
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:366988..367941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574033gene_758Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574033mRNA_758-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_758CDS_758Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_758 ID=mRNA_758|Name=jgi.p|Nanoce1779_2|574033|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
CAGATCTCGCTTCCACCCGCATAATATGAAGACTGCTTTTGCCTTCCTCG
CCCTCCTCGGCGTGTCCACGGCTTTTATGCCGTCTGCCCCTCGCATGTCC
CGCGGCCGCAGCATGCGCATGGCGGTGAACGAGATGATTGGCTCGGATGT
GGAGACGGGCGGTGTGTTTGACCCGCTGGGCCTTGCCAAGGATGAGGCCT
CCCTGTACCGCTCCCGTTTGATCGAGCTCAAGCATGGCCGAGTTGCCATG
TTGGCGTGCCTGGGCACCCTCGTCCAGTCCTTCTACCACCTGCCCGACGA
GGTCTTCTCCAACCCCCGCCCCTTGGCCGCTCTCTCCCAAGTCTTCAATG
AGCGCCCCGTGGCCTTCTGGCAAATCTTCCTCACCCTGGGCGCCATCGAA
CTGACCATCGGCAAGCAGGATACCGCTAACCGTGCCCCTGGTGATGTTGG
GTTTGGCGCTGCTTTCATCCCCGACGACGCCGATGACTTCGCCGCTCTCC
AGCTGAAGGAATTGAAGAACGGTCGGCTTGCGATGATGGCGATCATTGGC
CAGTTCGTGCAGGAAAAGCTGACGGGCCAAGGTCCTATTGAGCAGCTGCT
GGAGGGACACTACTCTCCGTTCGGCGATGGGCAGGGTATGTTCTAAGCGT
TGCCTTGCTGTCTGATAGCTTTGCTGTGCTGAGGCCAATCTCTTCGAGGA
GTGGGGGGAAGAAGGCAGGAGAGGGGGAGACGGAAACTACCATCACTGTC
GCGGGGTTGGTGTGGTATGATGTGGGATGAGAGGCGAAGGAGAGGAAGAA
GAGCCGTACAAAGAGAGCCTTCTGGTTTGAATCCCTCTAGGTGGGAGAGG
TGCGCGTGCGGCCCTCATTTTATTTACACTAAGCAGCAGCAGATGTAGTA
GAAGCAGACGGAAATGAAACGAAAGCGAAAGGAAAAAAAAGAGGATTTTT
GGTG
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protein sequence of jgi.p|Nanoce1779_2|574033

>mRNA_758-protein ID=mRNA_758-protein|Name=jgi.p|Nanoce1779_2|574033|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MKTAFAFLALLGVSTAFMPSAPRMSRGRSMRMAVNEMIGSDVETGGVFDP
LGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPL
AALSQVFNERPVAFWQIFLTLGAIELTIGKQDTANRAPGDVGFGAAFIPD
DADDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHYSPFG
DGQGMF*
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mRNA from alignment at scaffold_2:366988..367941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_758 ID=mRNA_758|Name=jgi.p|Nanoce1779_2|574033|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_2:366988..367941- (Nannochloropsis oceanica)
CAGATCTCGCTTCCACCCGCATAATATGAAGACTGCTTTTGCCTTCCTCG CCCTCCTCGGCGTGTCCACGGCTTTTATGCCGTCTGCCCCTCGCATGTCC CGCGGCCGCAGCATGCGCATGGCGGTGAACGAGATGATTGGCTCGGATGT GGAGACGGGCGGTGTGTTTGACCCGCTGGGCCTTGCCAAGGATGAGGCCT CCCTGTACCGCTCCCGTTTGATCGAGCTCAAGCATGGCCGAGTTGCCATG TTGGCGTGCCTGGGCACCCTCGTCCAGTCCTTCTACCACCTGCCCGACGA GGTCTTCTCCAACCCCCGCCCCTTGGCCGCTCTCTCCCAAGTCTTCAATG AGCGCCCCGTGGCCTTCTGGCAAATCTTCCTCACCCTGGGCGCCATCGAA CTGACCATCGGCAAGCAGGATACCGCTAACCGTGCCCCTGGTGATGTTGG GTTTGGCGCTGCTTTCATCCCCGACGACGCCGATGACTTCGCCGCTCTCC AGCTGAAGGAATTGAAGAACGGTCGGCTTGCGATGATGGCGATCATTGGC CAGTTCGTGCAGGAAAAGCTGACGGGCCAAGGTCCTATTGAGCAGCTGCT GGAGGGACACTACTCTCCGTTCGGCGATGGGCAGGGTATGTTCTAAGCGT TGCCTTGCTGTCTGATAGCTTTGCTGTGCTGAGGCCAATCTCTTCGAGGA GTGGGGGGAAGAAGGCAGGAGAGGGGGAGACGGAAACTACCATCACTGTC GCGGGGTTGGTGTGGTATGATGTGGGATGAGAGGCGAAGGAGAGGAAGAA GAGCCGTACAAAGAGAGCCTTCTGGTTTGAATCCCTCTAGGTGGGAGAGG TGCGCGTGCGGCCCTCATTTTATTTACACTAAGCAGCAGCAGATGTAGTA GAAGCAGACGGAAATGAAACGAAAGCGAAAGGAAAAAAAAGAGGATTTTT GGTG
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Coding sequence (CDS) from alignment at scaffold_2:366988..367941-

>mRNA_758 ID=mRNA_758|Name=jgi.p|Nanoce1779_2|574033|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_2:366988..367941- (Nannochloropsis oceanica)
ATGAAGACTGCTTTTGCCTTCCTCGCCCTCCTCGGCGTGTCCACGGCTTT
TATGCCGTCTGCCCCTCGCATGTCCCGCGGCCGCAGCATGCGCATGGCGG
TGAACGAGATGATTGGCTCGGATGTGGAGACGGGCGGTGTGTTTGACCCG
CTGGGCCTTGCCAAGGATGAGGCCTCCCTGTACCGCTCCCGTTTGATCGA
GCTCAAGCATGGCCGAGTTGCCATGTTGGCGTGCCTGGGCACCCTCGTCC
AGTCCTTCTACCACCTGCCCGACGAGGTCTTCTCCAACCCCCGCCCCTTG
GCCGCTCTCTCCCAAGTCTTCAATGAGCGCCCCGTGGCCTTCTGGCAAAT
CTTCCTCACCCTGGGCGCCATCGAACTGACCATCGGCAAGCAGGATACCG
CTAACCGTGCCCCTGGTGATGTTGGGTTTGGCGCTGCTTTCATCCCCGAC
GACGCCGATGACTTCGCCGCTCTCCAGCTGAAGGAATTGAAGAACGGTCG
GCTTGCGATGATGGCGATCATTGGCCAGTTCGTGCAGGAAAAGCTGACGG
GCCAAGGTCCTATTGAGCAGCTGCTGGAGGGACACTACTCTCCGTTCGGC
GATGGGCAGGGTATGTTCTAA
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Synonyms
Publications