jgi.p|Nanoce1779_2|599244, mRNA_7579 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599244
Unique Name	mRNA_7579
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1824
Alignment location	scaffold_20:302853..304880 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599330
Track	FilteredModels2
ProteinId	599244

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:302853..304880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599244	gene_7579	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599244	mRNA_7579-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7579	CDS_7579	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:302853..304880+
coding sequence from alignment at scaffold_20:302853..304880+

mRNA sequence

>mRNA_7579 ID=mRNA_7579|Name=jgi.p|Nanoce1779_2|599244|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp
ACAGCTCCTTCCCTGGGATAAGCAACGAACACCAACAATGGCGTTTTTAC
TGTACGACGACTGGATTGGCTGGGCTGCCGCAGTACTGTCTCGCCTTGCG
ACGGAGCACGGAGACCTGGTCACCTTTCTTACAGTAGGCACGTTGGTCCA
CGAGAGCGTCTTCATCGGGAGCAATCTCCTCTACACACTTCTGGCCAGCA
TCCCGTCATGCAGACAGCGCTGGAAGATTCAACCGAAAGCAGACCCCCCC
AAGAAACTAGTTTTTATGGCCCTCGTACACATTTACATTTTCCGGGTCCT
TGTTCAGCTGCCGTCGACTGCGGCTTATTTCTATATCTGGAAGCGCTGTG
GGGGCAGCATGCATATGCACCCTCCCTCCGCGTTCACGTGTTGCTGGCAG
GTTCTCACATGCGCGCTGTCAACGGAGGTCATGTTTTACTCCTCGCACCG
GTTGTTCCACCATCCCATTCTCTACAAGAATTTACACAAACGACATCACG
AATTCAAGACGCCTGTCGGTGTCAGCTCCGAATACGCCAATGTTGTGGAG
GATCTCGTGGTCAATCTGCCCTCTACCCTGTTGCCACCTGTGGTTATGGG
AGTTCACCCCCTCGTCTTGTTCCTGTGGCTGGGCCTTAGAATATTGGAAA
CAGTTGATGCGCATTCCGGGATGGCCCTACCTTGGTCTCCCTTTCATCTT
CTGCCCTGCTTTGCTGGCCCCTTATTTCACGATTACCACCACTCGGCGAC
GACAAAAGGAGCGTACGGCGTACTTGGCCTGATGGACTTTTTACTCGGGA
CAGATAAGGACTTTAAGGAGCACATGCGACGGCGAAAGCTGGCGAAAGCG
GCCACCAAACGAGCTAGCTGACGGAGGGGGAGGAAGTCGACGTAGAAATG
GAAGTGCCGCCAAAAGTCCGCCTAGAATGCATGCAGACGGCGCGGAAAGC
TGCATCGTTCTTCGAGAGAAACAGATGCAACACCACTCCACACAGGTCGT
TTACTCACCTTAGTGGCATCCAAGGGCCAGGGGAGGTCAGGAAGAATAGT
GGAATATGTTCGGATTCACTAAAAAGCAGCGAACGGACTTCCATCTGTAC
AAAATTACAGTCGAGAGTGGCGAATACTTCTCCGTCTTTCTGGTGTTGAA
AATTTGGAGAGGGAATATCAAAAGCACTCAAAATGCATAAAAACATATTA
ATAATAATTTTATCGCCAGGCCAATGAAGAACAAAGCGACGGCCTGCGGT
TTGGCTCAGACATGTTTCTGCAACGTGCACCTCCAGGGAGGGAAGCAGTC
CGACGATGTACCATACAGAGCATCACACCCCATGAGCAGGATACCAGGTT
TTATGCACTTAAATCATTCTGAGGCTTGTGCGGCTCCGACATACATGTCT
ATCATCAATCCCAAGTGAACTGTAGAAGAATGGAGGTTAGGGTTCTGGCG
TGTCCGTGAGTGGACATAAGAAGGATTCCTAGTAGGCCCGGACGCTGGGG
GTGAAGCTGTAGCAGTCGTCACATCTTATGCCTGTCAGGAGTCCCTCAGT
CAACGACATGATGACGGCGAGGTGCTTGCTGTGATGCTGCTCGTACTTTA
AAATACAAGGGCACTTGGGCAGCGAAGAAGCGAGACGCAGGGAGGAAATC
TAGAACAAGAAAGGAGATAAGGCAAACAGAGGAGCGAGCGCCGGGAAGCA
GAGCATCCCGCTGCTGCTGCTGCTGCTGCTGCCACTACTGGTTATGGTTA
CTATCGATCTCTTAAAAAAACAATCAAATGAAAATACCAAGATTCCTCTC
CGGTAGGATAGAGCTACACCAATA

protein sequence of jgi.p|Nanoce1779_2|599244

>mRNA_7579-protein ID=mRNA_7579-protein|Name=jgi.p|Nanoce1779_2|599244|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MAFLLYDDWIGWAAAVLSRLATEHGDLVTFLTVGTLVHESVFIGSNLLYT
LLASIPSCRQRWKIQPKADPPKKLVFMALVHIYIFRVLVQLPSTAAYFYI
WKRCGGSMHMHPPSAFTCCWQVLTCALSTEVMFYSSHRLFHHPILYKNLH
KRHHEFKTPVGVSSEYANVVEDLVVNLPSTLLPPVVMGVHPLVLFLWLGL
RILETVDAHSGMALPWSPFHLLPCFAGPLFHDYHHSATTKGAYGVLGLMD
FLLGTDKDFKEHMRRRKLAKAATKRAS*

mRNA from alignment at scaffold_20:302853..304880+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7579 ID=mRNA_7579|Name=jgi.p|Nanoce1779_2|599244|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at scaffold_20:302853..304880+ (Nannochloropsis oceanica)
ACAGCTCCTTCCCTGGGATAAGCAACGAACACCAACAATGGCGTTTTTAC
TGTACGACGACTGGATTGGCTGGGCTGCCGCAGTACTGTCTCGCCTTGCG
ACGGAGCACGGAGACCTGGTCACCTTTCTTACAGTAGGCACGTTGGTCCA
CGAGAGCGTCTTCATCGGGAGCAATCTCCTCTACACACTTCTGGCCAGCA
TCCCGTCATGCAGACAGCGCTGGAAGATTCAACCGAAAGCAGACCCCCCC
AAGAAACTAGTTTTTATGGCCCTCGTACACATTTACATTTTCCGGGTCCT
TGTTCAGCTGCCGTCGACTGCGGCTTATTTCTATATCTGGAAGCGCTGTG
GGGGCAGCATGCATATGCACCCTCCCTCCGCGTTCACGTGTTGCTGGCAG
GTTCTCACATGCGCGCTGTCAACGGAGGTCATGTTTTACTCCTCGCACCG
GTTGTTCCACCATCCCATTCTCTACAAGAATTTACACAAACGACATCACG
AATTCAAGACGCCTGTCGGTGTCAGCTCCGAATACGCCAATGTTGTGGAG
GATCTCGTGGTCAATCTGCCCTCTACCCTGTTGCCACCTGTGGTTATGGG
AGTTCACCCCCTCGTCTTGTTCCTGTGGCTGGGCCTTAGAATATTGGAAA
CAGTTGATGCGCATTCCGGGATGGCCCTACCTTGGTCTCCCTTTCATCTT
CTGCCCTGCTTTGCTGGCCCCTTATTTCACGATTACCACCACTCGGCGAC
GACAAAAGGAGCGTACGGCGTACTTGGCCTGATGGACTTTTTACTCGGGA
CAGATAAGGACTTTAAGGAGCACATGCGACGGCGAAAGCTGGCGAAAGCG
GCCACCAAACGAGCTAGCTGACGGAGGGGGAGGAAGTCGACGTAGAAATG
GAAGTGCCGCCAAAAGTCCGCCTAGAATGCATGCAGACGGCGCGGAAAGC
TGCATCGTTCTTCGAGAGAAACAGATGCAACACCACTCCACACAGGTCGT
TTACTCACCTTAGTGGCATCCAAGGGCCAGGGGAGGTCAGGAAGAATAGT
GGAATATGTTCGGATTCACTAAAAAGCAGCGAACGGACTTCCATCTGTAC
AAAATTACAGTCGAGAGTGGCGAATACTTCTCCGTCTTTCTGGTGTTGAA
AATTTGGAGAGGGAATATCAAAAGCACTCAAAATGCATAAAAACATATTA
ATAATAATTTTATCGCCAGGCCAATGAAGAACAAAGCGACGGCCTGCGGT
TTGGCTCAGACATGTTTCTGCAACGTGCACCTCCAGGGAGGGAAGCAGTC
CGACGATGTACCATACAGAGCATCACACCCCATGAGCAGGATACCAGGTT
TTATGCACTTAAATCATTCTGAGGCTTGTGCGGCTCCGACATACATGTCT
ATCATCAATCCCAAGTGAACTGTAGAAGAATGGTAAGGGTTACATGTATT
TCGAGTCGTCTCATTAGCACTGCCTCTCTAAATAAACTGAATCATCAATT
GTCAACATCGTCAATGTCCTCACTCTCCATTTTATTTACTGTACTTTTAA
ATTAAATTGTCGAGAATTGAAATATTTTTCTGTCCTAATTGTGCCTTCGA
TTTTTCGACTCTCACTCCAATGCTCCAATTATCCAGGAGGTTAGGGTTCT
GGCGTGTCCGTGAGTGGACATAAGAAGGATTCCTAGTAGGCCCGGACGCT
GGGGGTGAAGCTGTAGCAGTCGTCACATCTTATGCCTGTCAGGAGTCCCT
CAGTCAACGACATGATGACGGCGAGGTGCTTGCTGTGATGCTGCTCGTAC
TTTAAAATACAAGGGCACTTGGGCAGCGAAGAAGCGAGACGCAGGGAGGA
AATCTAGAACAAGAAAGGAGATAAGGCAAACAGAGGAGCGAGCGCCGGGA
AGCAGAGCATCCCGCTGCTGCTGCTGCTGCTGCTGCCACTACTGGTTATG
GTTACTATCGATCTCTTAAAAAAACAATCAAATGAAAATACCAAGATTCC
TCTCCGGTAGGATAGAGCTACACCAATA

Coding sequence (CDS) from alignment at scaffold_20:302853..304880+

>mRNA_7579 ID=mRNA_7579|Name=jgi.p|Nanoce1779_2|599244|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_20:302853..304880+ (Nannochloropsis oceanica)
ATGGCGTTTTTACTGTACGACGACTGGATTGGCTGGGCTGCCGCAGTACT
GTCTCGCCTTGCGACGGAGCACGGAGACCTGGTCACCTTTCTTACAGTAG
GCACGTTGGTCCACGAGAGCGTCTTCATCGGGAGCAATCTCCTCTACACA
CTTCTGGCCAGCATCCCGTCATGCAGACAGCGCTGGAAGATTCAACCGAA
AGCAGACCCCCCCAAGAAACTAGTTTTTATGGCCCTCGTACACATTTACA
TTTTCCGGGTCCTTGTTCAGCTGCCGTCGACTGCGGCTTATTTCTATATC
TGGAAGCGCTGTGGGGGCAGCATGCATATGCACCCTCCCTCCGCGTTCAC
GTGTTGCTGGCAGGTTCTCACATGCGCGCTGTCAACGGAGGTCATGTTTT
ACTCCTCGCACCGGTTGTTCCACCATCCCATTCTCTACAAGAATTTACAC
AAACGACATCACGAATTCAAGACGCCTGTCGGTGTCAGCTCCGAATACGC
CAATGTTGTGGAGGATCTCGTGGTCAATCTGCCCTCTACCCTGTTGCCAC
CTGTGGTTATGGGAGTTCACCCCCTCGTCTTGTTCCTGTGGCTGGGCCTT
AGAATATTGGAAACAGTTGATGCGCATTCCGGGATGGCCCTACCTTGGTC
TCCCTTTCATCTTCTGCCCTGCTTTGCTGGCCCCTTATTTCACGATTACC
ACCACTCGGCGACGACAAAAGGAGCGTACGGCGTACTTGGCCTGATGGAC
TTTTTACTCGGGACAGATAAGGACTTTAAGGAGCACATGCGACGGCGAAA
GCTGGCGAAAGCGGCCACCAAACGAGCTAGCTGA

Synonyms

Publications