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Properties
| Property Name | Value |
|---|
| TranscriptId | 160066 |
| Track | FilteredModels2 |
| ProteinId | 159980 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:296540..298056 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7577 ID=mRNA_7577|Name=jgi.p|Nanoce1779_2|159980|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
TGGAGCCGTGGACCCGGGAGGCCAACGGGGGAGCAGTAACAGCACAGGTT
GCGAGGGGCGCTGTTTCTCGTCCTTCTTTCCTCCCGATACCCCCCCCCAT
TGATCCTTGCTTTGACTGGCAATTAAAGGGGATGCACCGGCGGGAATTAC
CAATTTACATTACGATGACTCACGCAGTCATATATCTTAAGAAGCGAGCA
GAGACACGATCCAGCTCGAAGGGGGAAAGTTAGTAAGCCTCCCGTCCATG
TTCCTCTCGCCACATGAGAAACAAAAACAAAAACAAAAAAAGTACGACAT
CCCGTAGTTCTTTTTTCTGCCGTTATCCTACATTCCTAGAACTATCGCAT
GCAACCTTACGTCACAGGACTTGCATACGAGGACAATCTTTCCATCAATA
GAATGTTGCATATACTTACCCCTACTCTCGTCCGAGTTTTTCTAGCGACT
TTGACAGGTTTTTCATCTAGCAGAGTCCCCGGACGGCCCAAACAGGGCCA
GGAGGAGGGGAGTGGGAGAAAGAGGAGGTCAGTGAGAAGGCAACAGGTAG
AATGTCCCTATATATTGCCGCGGTAGACCAAACCGGAGATCATGGGGACG
AGCTTCTCCACGGACCATACTCCTGTACACCCGCAGGATGTTGCGTGCCC
CATTGCCGTCCCGAGACACGAACTGTTCACAGGTGTCACACCAATAAAGT
CCTCTGGTGGCCCGCACGTGACCTCCTCCTCCTCCTCCGCCTCTTCCTCC
TCCTCCTCCGCCTCCGCCTCCTCCTCCGCATCGTCCTCCTCCTGCTGCTG
CTGCTGCTGCTATTGCTCCTCTTGTTATTGCTCCTCCTTCTTCTCCCCTT
TCCCATCCTCCTCGTACCCTTCCCCCTCTTCTCCCTCTCCCTACTCCTAC
TCTTCCTCCTTCTCTCCCTCCTCCTCTCTCTCCTCTCCCTTCTCCTCCTC
GTGTCCCTCCGTCTTTCCCTCCTCCTCCTTCCCTCACTCCCCCTCCTTCT
TCCTCCTCTTCCTCTTTTTCTTATTCGTCTTCCTCTTCTTTCTTTCATCA
TCATCTCCTTCTTCTTTTCCTTCTTTTTCTTTTCCTTTTTCTTCTTCTTC
TTCTCCTTCCTCCTCTTCTTCTTTTTCATCTTCTTCCTCTTCTCCTCCTC
GTCCACCTCCTCGTTCAACTCCTTATCCACCTCCTCGTCCTTCCCCCCCT
CCTTCACCTGCTGCTTCTGGTGCTACTACCAGTGCTCCTTCTACTACTGA
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCTCCTCC
TCCTCGTTAGAGGAAAGCAGTGCGTGGATTGGAGGCCGGCAAAAACACAA
GAAGCGGGCAAAAATTTGGGCTTGGACATATAATTTCCTTGAAAGCAACT
TCACACTTAAGCTCTGTCATGTCCGAGGGTGGCCAAGGGGTACGCACGTA
GTCGCAGAGCAGCGATGTGAAGCCCCGTGGAGCTGCCGAGAGTCCTTCTC
AGGAGGGGCAAGCAGGC back to topprotein sequence of jgi.p|Nanoce1779_2|159980 >mRNA_7577-protein ID=mRNA_7577-protein|Name=jgi.p|Nanoce1779_2|159980|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MGTSFSTDHTPVHPQDVACPIAVPRHELFTGVTPIKSSGGPHVTSSSSSA
SSSSSSASASSSASSSSCCCCCCYCSSCYCSSFFSPFPSSSYPSPSSPSP
YSYSSSFSPSSSLSSPFSSSCPSVFPSSSFPHSPSFFLLFLFFLFVFLFF
LSSSSPSSFPSFSFPFSSSSSPSSSSSFSSSSSSPPRPPPRSTPYPPPRP
SPPPSPAASGATTSAPSTTDPPPPPPPPPPPPPPLLLLVRGKQCVDWRPA
KTQEAGKNLGLDI* back to topmRNA from alignment at scaffold_20:296540..298056+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7577 ID=mRNA_7577|Name=jgi.p|Nanoce1779_2|159980|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at scaffold_20:296540..298056+ (Nannochloropsis oceanica)
TGGAGCCGTGGACCCGGGAGGCCAACGGGGGAGCAGTAACAGCACAGGTT
GCGAGGGGCGCTGTTTCTCGTCCTTCTTTCCTCCCGATACCCCCCCCCAT
TGATCCTTGCTTTGACTGGCAATTAAAGGGGATGCACCGGCGGGAATTAC
CAATTTACATTACGATGACTCACGCAGTCATATATCTTAAGAAGCGAGCA
GAGACACGATCCAGCTCGAAGGGGGAAAGTTAGTAAGCCTCCCGTCCATG
TTCCTCTCGCCACATGAGAAACAAAAACAAAAACAAAAAAAGTACGACAT
CCCGTAGTTCTTTTTTCTGCCGTTATCCTACATTCCTAGAACTATCGCAT
GCAACCTTACGTCACAGGACTTGCATACGAGGACAATCTTTCCATCAATA
GAATGTTGCATATACTTACCCCTACTCTCGTCCGAGTTTTTCTAGCGACT
TTGACAGGTTTTTCATCTAGCAGAGTCCCCGGACGGCCCAAACAGGGCCA
GGAGGAGGGGAGTGGGAGAAAGAGGAGGTCAGTGAGAAGGCAACAGGTAG
AATGTCCCTATATATTGCCGCGGTAGACCAAACCGGAGATCATGGGGACG
AGCTTCTCCACGGACCATACTCCTGTACACCCGCAGGATGTTGCGTGCCC
CATTGCCGTCCCGAGACACGAACTGTTCACAGGTGTCACACCAATAAAGT
CCTCTGGTGGCCCGCACGTGACCTCCTCCTCCTCCTCCGCCTCTTCCTCC
TCCTCCTCCGCCTCCGCCTCCTCCTCCGCATCGTCCTCCTCCTGCTGCTG
CTGCTGCTGCTATTGCTCCTCTTGTTATTGCTCCTCCTTCTTCTCCCCTT
TCCCATCCTCCTCGTACCCTTCCCCCTCTTCTCCCTCTCCCTACTCCTAC
TCTTCCTCCTTCTCTCCCTCCTCCTCTCTCTCCTCTCCCTTCTCCTCCTC
GTGTCCCTCCGTCTTTCCCTCCTCCTCCTTCCCTCACTCCCCCTCCTTCT
TCCTCCTCTTCCTCTTTTTCTTATTCGTCTTCCTCTTCTTTCTTTCATCA
TCATCTCCTTCTTCTTTTCCTTCTTTTTCTTTTCCTTTTTCTTCTTCTTC
TTCTCCTTCCTCCTCTTCTTCTTTTTCATCTTCTTCCTCTTCTCCTCCTC
GTCCACCTCCTCGTTCAACTCCTTATCCACCTCCTCGTCCTTCCCCCCCT
CCTTCACCTGCTGCTTCTGGTGCTACTACCAGTGCTCCTTCTACTACTGA
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCTCCTCC
TCCTCGTTAGAGGAAAGCAGTGCGTGGATTGGAGGCCGGCAAAAACACAA
GAAGCGGGCAAAAATTTGGGCTTGGACATATAATTTCCTTGAAAGCAACT
TCACACTTAAGCTCTGTCATGTCCGAGGGTGGCCAAGGGGTACGCACGTA
GTCGCAGAGCAGCGATGTGAAGCCCCGTGGAGCTGCCGAGAGTCCTTCTC
AGGAGGGGCAAGCAGGC back to topCoding sequence (CDS) from alignment at scaffold_20:296540..298056+ >mRNA_7577 ID=mRNA_7577|Name=jgi.p|Nanoce1779_2|159980|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_20:296540..298056+ (Nannochloropsis oceanica)
ATGGGGACGAGCTTCTCCACGGACCATACTCCTGTACACCCGCAGGATGT
TGCGTGCCCCATTGCCGTCCCGAGACACGAACTGTTCACAGGTGTCACAC
CAATAAAGTCCTCTGGTGGCCCGCACGTGACCTCCTCCTCCTCCTCCGCC
TCTTCCTCCTCCTCCTCCGCCTCCGCCTCCTCCTCCGCATCGTCCTCCTC
CTGCTGCTGCTGCTGCTGCTATTGCTCCTCTTGTTATTGCTCCTCCTTCT
TCTCCCCTTTCCCATCCTCCTCGTACCCTTCCCCCTCTTCTCCCTCTCCC
TACTCCTACTCTTCCTCCTTCTCTCCCTCCTCCTCTCTCTCCTCTCCCTT
CTCCTCCTCGTGTCCCTCCGTCTTTCCCTCCTCCTCCTTCCCTCACTCCC
CCTCCTTCTTCCTCCTCTTCCTCTTTTTCTTATTCGTCTTCCTCTTCTTT
CTTTCATCATCATCTCCTTCTTCTTTTCCTTCTTTTTCTTTTCCTTTTTC
TTCTTCTTCTTCTCCTTCCTCCTCTTCTTCTTTTTCATCTTCTTCCTCTT
CTCCTCCTCGTCCACCTCCTCGTTCAACTCCTTATCCACCTCCTCGTCCT
TCCCCCCCTCCTTCACCTGCTGCTTCTGGTGCTACTACCAGTGCTCCTTC
TACTACTGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTC
CCCTCCTCCTCCTCGTTAGAGGAAAGCAGTGCGTGGATTGGAGGCCGGCA
AAAACACAAGAAGCGGGCAAAAATTTGGGCTTGGACATATAA back to top
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