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Properties
| Property Name | Value |
|---|
| TranscriptId | 599320 |
| Track | FilteredModels2 |
| ProteinId | 599234 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_20 | supercontig | scaffold_20:294063..296230 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7576 ID=mRNA_7576|Name=jgi.p|Nanoce1779_2|599234|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp
ACAGGTTCTCTTCGCCCCTCCGCGTTGCATTATGACCACTCCTTACGCCG
CTGAGCTCATTGCGACCGCCCATGCCATCGTGGCAACGGGCAAAGGCATC
CTTGCTGCTGACGAGTCCACGGGCACTATCGGCAAGCGCTTCGCCCCCAT
TAATGTGGAGAACATCGAGGAGAACCGCCGCAAGTACCGCCAGCTCCTCT
TCACGACCAAGGGCCTGAACGAGTACATCAGCGGGGTGATTCTATTCGAG
GAGACCCTCTATCAGAAGGGAGACGATGGCACTAGCTTCGTCGATATGCT
TAATGCACAGAACATCATCCCCGGGATCAAAGTCGACAAGGGTGTAGTTG
CCTTGCCCGGGACCGACGGTGAGACCGTCACCCAAGGAATAGACGATCTG
GCCAAACGCGCGGCCGAGTACTACAAGGCCGGGGCCCGCTTCGCCAAGTG
GCGTGGAGTGCTCAACATTAATGACAGCACCGGCGCGACCCCCTCGCAGC
TGGCGATTGACCAGAACGCGCAGGCCCTCGCCCGGTATGCCCAGCTCTGC
CAGCAGTCTGGCTTGGTCCCAATTGTCGAGCCCGAGGTGCTCATGGACGG
GACGCACTCCATCGAGCACGCCGCAGCCATCACCGAGAAGGTTCTGGCCG
CTACTTACAAGGCGCTGTCTGACCACCACGTTCTCTTGGAAGGCACCCTG
CTCAAGCCCAACATGGTGCGCTCCGGCGAGGCTGCTGCCGTGCAGGCCTC
CGCTGAGGAGATTGGCATTGCCACGGTGCGCGTGCTCCAGCACACAGTCC
CAGTGGCTGTGCCTGGCATAACTTTCCTTTCTGGAGGGTTGTCGGAGGAG
AATGCCTCCCTTGCTTTGGATGCCCTAAACAAGGCGCCGGGAAAGAAGCC
TTGGGCGTTGACCTTCTCTTATGGCCGTGCTCTGCAGACGTCGTGTCTCA
GGGCCTGGGGAGGGCATGATGCGAACATCCCCGCGGCGAAAGAGACGCTG
TTGGTCCGTGCCAAGGCCAATTCGGAGGCGAGCAAGGGCGTGTACAGCGG
GGGGGCTGGAGGGGCCGCGGCGAAGGAGTCGACGTTTGTGGCTAACTACT
CTTATTAATTTGAGAAGGAGAGAAGGAGGTGGTTAATTTCTCTTGGACAA
CGAAGACAAGCCTGTGTTGAAGAGTAACATGGAGAGTATGAGAGGTATAT
AACGCGAGGGGATAAGGAGACGGATGAAGAGAGGGCATGTGAAAATACTA
TCGCTTTCGACCAGTTTCTCCTTCTCTCTTTTTTGGATGTCGTTTCCATG
TAGCGTCTAAGCGAAAGGAGCATGAAAAGAGAGGAGGATGCAAAAGCCAG
GCAGTGAGAGCGTCATTGTCACTTAGAAGTTTCGGTGAGGTGAGAGACAA
TATAATCCTGGCTTTTTCTTGTTCTCGTGTATTTTGTGCCCTCCTTTATT
CTTTATTTTATTTTTGTCATCAGCCCCCGTTTGCAGCAGCTATTGGTCCT
GCTGGATTTTTGGAGGGGAGTGGTGTTGTTGTCTGTCTATGTGAACGGTC
GAAGAGAAGGAAGAAAAGGGGAGAGAGTAGAAAGAGAGAGAGAGACGTGT
GTGCCTCAAGTCTACTAGGGAAGGAAGAGGAGGGTAATAGAGGCTTGGGT
GCCTTCTCTTTTTCATCAGTTGGACTTTCAAAGAAAAAGAAACAATGCTT
TTCTCATTGGCACGGC back to topprotein sequence of jgi.p|Nanoce1779_2|599234 >mRNA_7576-protein ID=mRNA_7576-protein|Name=jgi.p|Nanoce1779_2|599234|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MTTPYAAELIATAHAIVATGKGILAADESTGTIGKRFAPINVENIEENRR
KYRQLLFTTKGLNEYISGVILFEETLYQKGDDGTSFVDMLNAQNIIPGIK
VDKGVVALPGTDGETVTQGIDDLAKRAAEYYKAGARFAKWRGVLNINDST
GATPSQLAIDQNAQALARYAQLCQQSGLVPIVEPEVLMDGTHSIEHAAAI
TEKVLAATYKALSDHHVLLEGTLLKPNMVRSGEAAAVQASAEEIGIATVR
VLQHTVPVAVPGITFLSGGLSEENASLALDALNKAPGKKPWALTFSYGRA
LQTSCLRAWGGHDANIPAAKETLLVRAKANSEASKGVYSGGAGGAAAKES
TFVANYSY* back to topmRNA from alignment at scaffold_20:294063..296230- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7576 ID=mRNA_7576|Name=jgi.p|Nanoce1779_2|599234|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_20:294063..296230- (Nannochloropsis oceanica)
ACAGGTTCTCTTCGCCCCTCCGCGTTGCATTATGACCACTCCTTACGCCG
CTGAGCTCATTGCGACCGCCCATGCCATCGTGGCAACGGGCAAAGGTAAG
CAGGACAGACCAGACAACCCAAAGATATGTGACTCCTCTGGACATGGGCA
TGGGCATGGGCATGTGCTTACTAGCTGTGACTGCGGCTGTCGAGGTTGCG
TCATTTGTCTTAACAGTTGATGCACTATGAAGGATGGAGGGGAATAAGCG
TTCCACTGCGCTGTTTGTTTTTTGTACTGCTGCATCCCCGTCGAATACCG
TGTGATCTCACAACATCTTTTTTCCAATGTCCACTTCACTGCAGGCATCC
TTGCTGCTGACGAGTCCACGGGCACTATCGGCAAGCGCTTCGCCCCCATT
AATGTGGAGAACATCGAGGAGAACCGCCGCAAGTACCGCCAGCTCCTCTT
CACGACCAAGGGTAAGTCTGCCCAGGAGGACACGGACAAAGCGTCGTGCA
TCACATCGCTGGGAGGGGAGGTGTGAGGTTGAGTAGAAGCTATCGCGTAT
CGACGAATCGCATCAGTGCTTTTCTTTTACTGCTTATGTGTGTGAGTGCG
TGTGTTGAGGCATGCAATCGCCAGTCATTTACTCACAGCCTGCCCCTCCC
TTCCTTCCTCCCAGGCCTGAACGAGTACATCAGCGGGGTGATTCTATTCG
AGGAGACCCTCTATCAGAAGGGAGACGATGGCACTAGCTTCGTCGATATG
CTTAATGCACAGAACATCATCCCCGGGATCAAAGTCGACAAGGGTGTAGT
TGCCTTGCCCGGGACCGACGGTGAGACCGTCACCCAAGGAATAGACGATC
TGGCCAAACGCGCGGCCGAGTACTACAAGGCCGGGGCCCGCTTCGCCAAG
TGGCGTGGAGTGCTCAACATTAATGACAGCACCGGCGCGACCCCCTCGCA
GCTGGCGATTGACCAGAACGCGCAGGCCCTCGCCCGGTATGCCCAGCTCT
GCCAGCAGTCTGGCTTGGTCCCAATTGTCGAGCCCGAGGTGCTCATGGAC
GGGACGCACTCCATCGAGCACGCCGCAGCCATCACCGAGAAGGTTCTGGC
CGCTACTTACAAGGCGCTGTCTGACCACCACGTTCTCTTGGAAGGCACCC
TGCTCAAGCCCAACATGGTGCGCTCCGGCGAGGCTGCTGCCGTGCAGGCC
TCCGCTGAGGAGATTGGCATTGCCACGGTGCGCGTGCTCCAGCACACAGT
CCCAGTGGCTGTGCCTGGCATAACTTTCCTTTCTGGAGGGTTGTCGGAGG
AGAATGCCTCCCTTGCTTTGGATGCCCTAAACAAGGCGCCGGGAAAGAAG
CCTTGGGCGTTGACCTTCTCTTATGGCCGTGCTCTGCAGACGTCGTGTCT
CAGGGCCTGGGGAGGGCATGATGCGAACATCCCCGCGGCGAAAGAGACGC
TGTTGGTCCGTGCCAAGGCCAATTCGGAGGCGAGCAAGGGCGTGTACAGC
GGGGGGGCTGGAGGGGCCGCGGCGAAGGAGTCGACGTTTGTGGCTAACTA
CTCTTATTAATTTGAGAAGGAGAGAAGGAGGTGGTTAATTTCTCTTGGAC
AACGAAGACAAGCCTGTGTTGAAGAGTAACATGGAGAGTATGAGAGGTAT
ATAACGCGAGGGGATAAGGAGACGGATGAAGAGAGGGCATGTGAAAATAC
TATCGCTTTCGACCAGTTTCTCCTTCTCTCTTTTTTGGATGTCGTTTCCA
TGTAGCGTCTAAGCGAAAGGAGCATGAAAAGAGAGGAGGATGCAAAAGCC
AGGCAGTGAGAGCGTCATTGTCACTTAGAAGTTTCGGTGAGGTGAGAGAC
AATATAATCCTGGCTTTTTCTTGTTCTCGTGTATTTTGTGCCCTCCTTTA
TTCTTTATTTTATTTTTGTCATCAGCCCCCGTTTGCAGCAGCTATTGGTC
CTGCTGGATTTTTGGAGGGGAGTGGTGTTGTTGTCTGTCTATGTGAACGG
TCGAAGAGAAGGAAGAAAAGGGGAGAGAGTAGAAAGAGAGAGAGAGACGT
GTGTGCCTCAAGTCTACTAGGGAAGGAAGAGGAGGGTAATAGAGGCTTGG
GTGCCTTCTCTTTTTCATCAGTTGGACTTTCAAAGAAAAAGAAACAATGC
TTTTCTCATTGGCACGGC back to topCoding sequence (CDS) from alignment at scaffold_20:294063..296230- >mRNA_7576 ID=mRNA_7576|Name=jgi.p|Nanoce1779_2|599234|organism=Nannochloropsis oceanica|type=CDS|length=3231bp|location=Sequence derived from alignment at scaffold_20:294063..296230- (Nannochloropsis oceanica)
GCCTGAACGAGTACATCAGCGGGGTGATTCTATTCGAGGAGACCCTCTAT
CAGAAGGGAGACGATGGCACTAGCTTCGTCGATATGCTTAATGCACAGAA
CATCATCCCCGGGATCAAAGTCGACAAGGGTGTAGTTGCCTTGCCCGGGA
CCGACGGTGAGACCGTCACCCAAGGAATAGACGATCTGGCCAAACGCGCG
GCCGAGTACTACAAGGCCGGGGCCCGCTTCGCCAAGTGGCGTGGAGTGCT
CAACATTAATGACAGCACCGGCGCGACCCCCTCGCAGCTGGCGATTGACC
AGAACGCGCAGGCCCTCGCCCGGTATGCCCAGCTCTGCCAGCAGTCTGGC
TTGGTCCCAATTGTCGAGCCCGAGGTGCTCATGGACGGGACGCACTCCAT
CGAGCACGCCGCAGCCATCACCGAGAAGGTTCTGGCCGCTACTTACAAGG
CGCTGTCTGACCACCACGTTCTCTTGGAAGGCACCCTGCTCAAGCCCAAC
ATGGTGCGCTCCGGCGAGGCTGCTGCCGTGCAGGCCTCCGCTGAGGAGAT
TGGCATTGCCACGGTGCGCGTGCTCCAGCACACAGTCCCAGTGGCTGTGC
CTGGCATAACTTTCCTTTCTGGAGGGTTGTCGGAGGAGAATGCCTCCCTT
GCTTTGGATGCCCTAAACAAGGCGCCGGGAAAGAAGCCTTGGGCGTTGAC
CTTCTCTTATGGCCGTGCTCTGCAGACGTCGTGTCTCAGGGCCTGGGGAG
GGCATGATGCGAACATCCCCGCGGCGAAAGAGACGCTGTTGGTCCGTGCC
AAGGCCAATTCGGAGGCGAGCAAGGGCGTGTACAGCGGGGGGGCTGGAGG
GGCCGCGGCGAAGGAGTCGACGTTTGTGGCTAACTACTCTTATTAAGCAT
CCTTGCTGCTGACGAGTCCACGGGCACTATCGGCAAGCGCTTCGCCCCCA
TTAATGTGGAGAACATCGAGGAGAACCGCCGCAAGTACCGCCAGCTCCTC
TTCACGACCAAGGATGACCACTCCTTACGCCGCTGAGCTCATTGCGACCG
CCCATGCCATCGTGGCAACGGGCAAAGGCCTGAACGAGTACATCAGCGGG
GTGATTCTATTCGAGGAGACCCTCTATCAGAAGGGAGACGATGGCACTAG
CTTCGTCGATATGCTTAATGCACAGAACATCATCCCCGGGATCAAAGTCG
ACAAGGGTGTAGTTGCCTTGCCCGGGACCGACGGTGAGACCGTCACCCAA
GGAATAGACGATCTGGCCAAACGCGCGGCCGAGTACTACAAGGCCGGGGC
CCGCTTCGCCAAGTGGCGTGGAGTGCTCAACATTAATGACAGCACCGGCG
CGACCCCCTCGCAGCTGGCGATTGACCAGAACGCGCAGGCCCTCGCCCGG
TATGCCCAGCTCTGCCAGCAGTCTGGCTTGGTCCCAATTGTCGAGCCCGA
GGTGCTCATGGACGGGACGCACTCCATCGAGCACGCCGCAGCCATCACCG
AGAAGGTTCTGGCCGCTACTTACAAGGCGCTGTCTGACCACCACGTTCTC
TTGGAAGGCACCCTGCTCAAGCCCAACATGGTGCGCTCCGGCGAGGCTGC
TGCCGTGCAGGCCTCCGCTGAGGAGATTGGCATTGCCACGGTGCGCGTGC
TCCAGCACACAGTCCCAGTGGCTGTGCCTGGCATAACTTTCCTTTCTGGA
GGGTTGTCGGAGGAGAATGCCTCCCTTGCTTTGGATGCCCTAAACAAGGC
GCCGGGAAAGAAGCCTTGGGCGTTGACCTTCTCTTATGGCCGTGCTCTGC
AGACGTCGTGTCTCAGGGCCTGGGGAGGGCATGATGCGAACATCCCCGCG
GCGAAAGAGACGCTGTTGGTCCGTGCCAAGGCCAATTCGGAGGCGAGCAA
GGGCGTGTACAGCGGGGGGGCTGGAGGGGCCGCGGCGAAGGAGTCGACGT
TTGTGGCTAACTACTCTTATTAAGCATCCTTGCTGCTGACGAGTCCACGG
GCACTATCGGCAAGCGCTTCGCCCCCATTAATGTGGAGAACATCGAGGAG
AACCGCCGCAAGTACCGCCAGCTCCTCTTCACGACCAAGGATGACCACTC
CTTACGCCGCTGAGCTCATTGCGACCGCCCATGCCATCGTGGCAACGGGC
AAAGGCCTGAACGAGTACATCAGCGGGGTGATTCTATTCGAGGAGACCCT
CTATCAGAAGGGAGACGATGGCACTAGCTTCGTCGATATGCTTAATGCAC
AGAACATCATCCCCGGGATCAAAGTCGACAAGGGTGTAGTTGCCTTGCCC
GGGACCGACGGTGAGACCGTCACCCAAGGAATAGACGATCTGGCCAAACG
CGCGGCCGAGTACTACAAGGCCGGGGCCCGCTTCGCCAAGTGGCGTGGAG
TGCTCAACATTAATGACAGCACCGGCGCGACCCCCTCGCAGCTGGCGATT
GACCAGAACGCGCAGGCCCTCGCCCGGTATGCCCAGCTCTGCCAGCAGTC
TGGCTTGGTCCCAATTGTCGAGCCCGAGGTGCTCATGGACGGGACGCACT
CCATCGAGCACGCCGCAGCCATCACCGAGAAGGTTCTGGCCGCTACTTAC
AAGGCGCTGTCTGACCACCACGTTCTCTTGGAAGGCACCCTGCTCAAGCC
CAACATGGTGCGCTCCGGCGAGGCTGCTGCCGTGCAGGCCTCCGCTGAGG
AGATTGGCATTGCCACGGTGCGCGTGCTCCAGCACACAGTCCCAGTGGCT
GTGCCTGGCATAACTTTCCTTTCTGGAGGGTTGTCGGAGGAGAATGCCTC
CCTTGCTTTGGATGCCCTAAACAAGGCGCCGGGAAAGAAGCCTTGGGCGT
TGACCTTCTCTTATGGCCGTGCTCTGCAGACGTCGTGTCTCAGGGCCTGG
GGAGGGCATGATGCGAACATCCCCGCGGCGAAAGAGACGCTGTTGGTCCG
TGCCAAGGCCAATTCGGAGGCGAGCAAGGGCGTGTACAGCGGGGGGGCTG
GAGGGGCCGCGGCGAAGGAGTCGACGTTTGTGGCTAACTACTCTTATTAA
GCATCCTTGCTGCTGACGAGTCCACGGGCACTATCGGCAAGCGCTTCGCC
CCCATTAATGTGGAGAACATCGAGGAGAACCGCCGCAAGTACCGCCAGCT
CCTCTTCACGACCAAGGATGACCACTCCTTACGCCGCTGAGCTCATTGCG
ACCGCCCATGCCATCGTGGCAACGGGCAAAG back to top
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